Gvermi5873.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi5873.t1
Unique Name	Gvermi5873.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	341

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1708	contig	ScGOVlb_1708:505022..506044 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706680.1
Preferred name	MTX3
PFAMs	GST_C_6,GST_N_4,SAM35,Tom37
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00299
KEGG ko	ko:K01613,ko:K17714,ko:K17776
KEGG TC	1.B.33.3
KEGG Reaction	R02055
KEGG Pathway	ko00564,ko01100,ko01110,map00564,map01100,map01110
KEGG Module	M00093
GOs	GO:0001401,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0006605,GO:0006626,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006869,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007008,GO:0008104,GO:0008150,GO:0009536,GO:0009987,GO:0010876,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0019867,GO:0022607,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045040,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0065003,GO:0070096,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805
Evalue	5.16e-41
EggNOG OGs	KOG3028@1\|root,KOG3028@2759\|Eukaryota
EC	4.1.1.65
Description	protein targeting to mitochondrion
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000,ko02000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5873	Gvermi5873	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_1708 505022..506044 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5873.t1.start1	Gvermi5873.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_1708 505022..505024 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5873.t1.CDS1	Gvermi5873.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_1708 505022..506044 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5873.t1.exon1	Gvermi5873.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_1708 505022..506044 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5873.t1.stop1	Gvermi5873.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_1708 506042..506044 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5873.t1	Gvermi5873.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_1708 505022..506044 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_1708:505022..506044+
coding sequence from alignment at ScGOVlb_1708:505022..506044+

mRNA sequence

>Gvermi5873.t1 ID=Gvermi5873.t1|Name=Gvermi5873.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=341bp
MPTRPIGKGARAARPVDSRAARSSEHLAVTARIYTEAGGWGLPTVDADGL
AAIALLRFCDVRFALCTGASRSMTTANVLPVVMFEHADSVEPSVCAGLPS
LIALLTANITLPDPNHSLTPFMIAESTAFATLLTSRFAPARLYEFFVVDS
NYNDIHHTLLENDAAFPLNRLLPFLKRRNIMRQLADRRPDSLYFDAGIAL
AALSTRLGDRNRFFYGDQPSVLDAIVFGYLATVLYVPLPCSQLRAHVAKY
PNLVAFVARVQQTFFARDGERIVGELDADALVEERRRDASRQARRPEHSQ
KSLSEEENTRLRWNRYFIVASAAAFVAHVLLGSEIELEYE*

spliced messenger RNA

>Gvermi5873.t1 ID=Gvermi5873.t1|Name=Gvermi5873.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at ScGOVlb_1708:505022..506044+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACCCGCCCAATTGGAAAGGgcgcgcgcgccgcgcgcccggtcga
ttcgcgcgccgcgcgcagcTCAGAGCACCTCGCCGTCACCGCACGCATCT
ACACCGAGGCCGGCGGTTGGGGCCTCCCCACCGTCGACGCCGACGGCCTC
GCCGCCAtcgccctgctgcgtttctgcgacgtccgcttcgcgctctgcac
cggcgcttcgcgctCAATGACCACCGCCAACGTCCTGCCCGTCGTCATGT
TTGAGCACGCCGACAGCGTCGAGCCCTCTGTCTGCGCAGGCCTCCCCTCC
CTCATCGCCCTGCTTACTGCAAACATCACCCTGCCCGACCCCAACCACTC
GCTCACCCCCTTCATGATCGCCGAAAGCACCGCCTTCGCCACCCTGCTCA
CCTCGCGCTTCGCCCCCGCCCGTCTCTACGAGTTTTTCGTCGTCGACAGC
AACTACAATGACATCCACCACACCCTGCTCGAGAACGATGCAGCCTTTCC
GCTAAATCGCCTGTTGCCCTTCCTCAAGCGCCGCAACATTATGCGCCAGC
TCGCCGACCGCCGCCCCGACAGCCTGTATTTTGATGCGGGCATCGCCCTC
GCCGCCCTGTCCACGCGCCTCGGCGATCGCAACCGCTTCTTCTACGGCGA
TCAGCCCTCCGTGCTGGACGCTATCGTCTTCGGCTATCTCGCCACCGTGC
TCTACGTGCCGCTGCCCTGCTCCCAGCTGCGCGCCCACGTCGCAAAGTAC
CCCAACCTCGTTGCGTTTGTGGCCCGTGTGCAACAGACCTTCTTCGCGCG
CGACGGTGAGCGCATCGTCGGCGAGCTCGACGCCGACGCTCTCGTGGAGG
AGCGTCGCCGCGACGCCAGTCGTCAGGCGCGCCGCCCCGAGCACTCGCAA
AAATCGCTTTCGGAGGAGGAGAACACACGTCTGCGCTGGAACCGTTACTT
TATCGTCGCATCGGCCGCTGCCTTTGTAGCACATGTGTTACTCGGCAGTG
AGATCGAACTTGAGTACGAGTAA

protein sequence of Gvermi5873.t1

>Gvermi5873.t1 ID=Gvermi5873.t1|Name=Gvermi5873.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=341bp
MPTRPIGKGARAARPVDSRAARSSEHLAVTARIYTEAGGWGLPTVDADGL
AAIALLRFCDVRFALCTGASRSMTTANVLPVVMFEHADSVEPSVCAGLPS
LIALLTANITLPDPNHSLTPFMIAESTAFATLLTSRFAPARLYEFFVVDS
NYNDIHHTLLENDAAFPLNRLLPFLKRRNIMRQLADRRPDSLYFDAGIAL
AALSTRLGDRNRFFYGDQPSVLDAIVFGYLATVLYVPLPCSQLRAHVAKY
PNLVAFVARVQQTFFARDGERIVGELDADALVEERRRDASRQARRPEHSQ
KSLSEEENTRLRWNRYFIVASAAAFVAHVLLGSEIELEYE*

mRNA from alignment at ScGOVlb_1708:505022..506044+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi5873.t1 ID=Gvermi5873.t1|Name=Gvermi5873.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at ScGOVlb_1708:505022..506044+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCACCCGCCCAATTGGAAAGGgcgcgcgcgccgcgcgcccggtcga
ttcgcgcgccgcgcgcagcTCAGAGCACCTCGCCGTCACCGCACGCATCT
ACACCGAGGCCGGCGGTTGGGGCCTCCCCACCGTCGACGCCGACGGCCTC
GCCGCCAtcgccctgctgcgtttctgcgacgtccgcttcgcgctctgcac
cggcgcttcgcgctCAATGACCACCGCCAACGTCCTGCCCGTCGTCATGT
TTGAGCACGCCGACAGCGTCGAGCCCTCTGTCTGCGCAGGCCTCCCCTCC
CTCATCGCCCTGCTTACTGCAAACATCACCCTGCCCGACCCCAACCACTC
GCTCACCCCCTTCATGATCGCCGAAAGCACCGCCTTCGCCACCCTGCTCA
CCTCGCGCTTCGCCCCCGCCCGTCTCTACGAGTTTTTCGTCGTCGACAGC
AACTACAATGACATCCACCACACCCTGCTCGAGAACGATGCAGCCTTTCC
GCTAAATCGCCTGTTGCCCTTCCTCAAGCGCCGCAACATTATGCGCCAGC
TCGCCGACCGCCGCCCCGACAGCCTGTATTTTGATGCGGGCATCGCCCTC
GCCGCCCTGTCCACGCGCCTCGGCGATCGCAACCGCTTCTTCTACGGCGA
TCAGCCCTCCGTGCTGGACGCTATCGTCTTCGGCTATCTCGCCACCGTGC
TCTACGTGCCGCTGCCCTGCTCCCAGCTGCGCGCCCACGTCGCAAAGTAC
CCCAACCTCGTTGCGTTTGTGGCCCGTGTGCAACAGACCTTCTTCGCGCG
CGACGGTGAGCGCATCGTCGGCGAGCTCGACGCCGACGCTCTCGTGGAGG
AGCGTCGCCGCGACGCCAGTCGTCAGGCGCGCCGCCCCGAGCACTCGCAA
AAATCGCTTTCGGAGGAGGAGAACACACGTCTGCGCTGGAACCGTTACTT
TATCGTCGCATCGGCCGCTGCCTTTGTAGCACATGTGTTACTCGGCAGTG
AGATCGAACTTGAGTACGAGTAA

Coding sequence (CDS) from alignment at ScGOVlb_1708:505022..506044+

>Gvermi5873.t1 ID=Gvermi5873.t1|Name=Gvermi5873.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1023bp|location=Sequence derived from alignment at ScGOVlb_1708:505022..506044+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCACCCGCCCAATTGGAAAGGgcgcgcgcgccgcgcgcccggtcga
ttcgcgcgccgcgcgcagcTCAGAGCACCTCGCCGTCACCGCACGCATCT
ACACCGAGGCCGGCGGTTGGGGCCTCCCCACCGTCGACGCCGACGGCCTC
GCCGCCAtcgccctgctgcgtttctgcgacgtccgcttcgcgctctgcac
cggcgcttcgcgctCAATGACCACCGCCAACGTCCTGCCCGTCGTCATGT
TTGAGCACGCCGACAGCGTCGAGCCCTCTGTCTGCGCAGGCCTCCCCTCC
CTCATCGCCCTGCTTACTGCAAACATCACCCTGCCCGACCCCAACCACTC
GCTCACCCCCTTCATGATCGCCGAAAGCACCGCCTTCGCCACCCTGCTCA
CCTCGCGCTTCGCCCCCGCCCGTCTCTACGAGTTTTTCGTCGTCGACAGC
AACTACAATGACATCCACCACACCCTGCTCGAGAACGATGCAGCCTTTCC
GCTAAATCGCCTGTTGCCCTTCCTCAAGCGCCGCAACATTATGCGCCAGC
TCGCCGACCGCCGCCCCGACAGCCTGTATTTTGATGCGGGCATCGCCCTC
GCCGCCCTGTCCACGCGCCTCGGCGATCGCAACCGCTTCTTCTACGGCGA
TCAGCCCTCCGTGCTGGACGCTATCGTCTTCGGCTATCTCGCCACCGTGC
TCTACGTGCCGCTGCCCTGCTCCCAGCTGCGCGCCCACGTCGCAAAGTAC
CCCAACCTCGTTGCGTTTGTGGCCCGTGTGCAACAGACCTTCTTCGCGCG
CGACGGTGAGCGCATCGTCGGCGAGCTCGACGCCGACGCTCTCGTGGAGG
AGCGTCGCCGCGACGCCAGTCGTCAGGCGCGCCGCCCCGAGCACTCGCAA
AAATCGCTTTCGGAGGAGGAGAACACACGTCTGCGCTGGAACCGTTACTT
TATCGTCGCATCGGCCGCTGCCTTTGTAGCACATGTGTTACTCGGCAGTG
AGATCGAACTTGAGTACGAGTAA