Gvermi5816.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi5816.t1
Unique Name	Gvermi5816.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	430

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1708	contig	ScGOVlb_1708:177640..178929 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707300.1
Preferred name	PRK
PFAMs	PRK
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002,RC00017
KEGG ko	ko:K00855
KEGG Reaction	R01523
KEGG Pathway	ko00710,ko01100,ko01120,ko01200,map00710,map01100,map01120,map01200
KEGG Module	M00165,M00166
GOs	GO:0003674,GO:0003824,GO:0004849,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006206,GO:0006213,GO:0006220,GO:0006221,GO:0006222,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008655,GO:0008974,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009173,GO:0009174,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010319,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019205,GO:0019206,GO:0019438,GO:0019637,GO:0019693,GO:0019899,GO:0019904,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034404,GO:0034641,GO:0034654,GO:0042221,GO:0042455,GO:0042651,GO:0042742,GO:0042802,GO:0042803,GO:0043094,GO:0043097,GO:0043174,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046049,GO:0046131,GO:0046132,GO:0046134,GO:0046390,GO:0046483,GO:0046983,GO:0048046,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:0097718,GO:0098542,GO:0099080,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Evalue	4.09e-185
EggNOG OGs	COG0572@1\|root,KOG4203@2759\|Eukaryota
EC	2.7.1.19
Description	UMP salvage
COG category	F
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5816	Gvermi5816	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_1708 177640..178929 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5816.t1.stop1	Gvermi5816.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_1708 177640..177642 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5816.t1.CDS1	Gvermi5816.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_1708 177640..178929 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5816.t1.exon1	Gvermi5816.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_1708 177640..178929 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5816.t1.start1	Gvermi5816.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_1708 178927..178929 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5816.t1	Gvermi5816.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_1708 177640..178929 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_1708:177640..178929-
coding sequence from alignment at ScGOVlb_1708:177640..178929-

mRNA sequence

>Gvermi5816.t1 ID=Gvermi5816.t1|Name=Gvermi5816.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=430bp
MAPAFIPAAALAASGRARPSAAVTSRRAFFGAVPAVQRARCERRVPVRAA
APRAAAVTTDNWVKAPGAERSHHHADAKIAANVSHAMERKGISRPVIIGV
AADSGCGKSTFLRRVTSIFGTKVSKAHTPVGDFISVICLDDYHTHDRKGR
REARVTALDERANNFDLMASQIAALKEGKSIMKPIYNHETGEIDPPELIE
PNHVIVIEGLHPMYDERVRELLDFSVYLDLADEVKIAWKIQRDMAERGHS
LENILASIESRKPDFERFVDPQKKNCDVVMEILPTQLIPDDTERKVLRVR
LLQDETCKLLDPVYLYDEGSTIDWIPCGRKLTCSYPGIKFHYGPDSYFDK
PVSVFEVDGGFEKLDEMVYVETHIERAGTKFFGEITQSLLRNPNAPGSTN
GTGLVQVLMAMMMRNVYEKITGRRVAISS*

spliced messenger RNA

>Gvermi5816.t1 ID=Gvermi5816.t1|Name=Gvermi5816.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at ScGOVlb_1708:177640..178929- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCGCCTTCATCCCCGCCGCCGCGCTCGCCGCCTCCGGCCGCGC
GCGCCCCTCCGCCGCTGTCACCTCGAGGCGCGCCTTCTTCGGCGCCGTCC
CGGCCGTGCAGCGCGCGCGATGCGAGCGCCGCGTGCCCGTGCGCGCCGCC
GCGCCGCGCGCCGCCGCTGTCACCACCGACAACTGGGTCAAGGCGCCGGG
CGCGGAGCGCTCCCACCACCACGCCGACGCCAAGATTGCCGCCAACGTGT
CGCACGCCATGGAGCGCAAGGGCATCTCGCGCCCCGTCATCATTGGCGTG
GCGGCCGACTCGGGCTGCGGCAAGTCCACCTTCCTGCGGAGGGTCACCAG
CATTTTCGGCACCAAGGTCAGCAAGGCGCACACGCCGGTGGGCGACTTCA
TTTCCGTCATTTGCCTGGATGACTACCATACGCACGACAGAAAGGGGCGG
AGGGAGGCAAGGGTCACTGCCTTGGACGAACGCGCCAACAACTTTGATCT
GATGGCTAGCCAGATAGCCGCGCTCAAGGAAGGCAAGAGCATCATGAAGC
CGATTTACAACCACGAAACGGGCGAGATTGATCCGCCGGAGCTCATCGAA
CCGAACCACGTGATCGTCATCGAGGGGCTGCATCCCATGTACGACGAACG
GGTGAGAGAACTCCTGGACTTCAGCGTATACCTGGATTTGGCCGACGAAG
TGAAGATTGCGTGGAAGATTCAGAGAGACATGGCCGAACGCGGCCATTCC
TTGGAGAACATCCTGGCCAGTATTGAGTCGCGAAAGCCGGACTTTGAACG
CTTTGTGGACCCTCAAAAGAAGAACTGCGATGTGGTCATGGAGATCTTGC
CCACACAACTGATCCCGGATGACACTGAGAGAAAGGTGTTGCGAGTTCGG
CTGCTGCAAGATGAAACGTGCAAACTGCTGGACCCGGTGTATCTGTACGA
CGAGGGCTCCACCATTGACTGGATTCCGTGCGGCCGAAAGCTCACGTGCT
CGTACCCGGGTATTAAGTTCCATTACGGACCAGATTCTTACTTTGACAAG
CCAGTGTCGGTGTTTGAGGTTGACGGGGGCTTTGAGAAGCTTGACGAAAT
GGTGTACGTTGAAACACACATCGAGCGGGCTGGCACCAAGTTCTTTGGCG
AAATCACGCAGTCTTTGCTGAGGAACCCAAACGCGCCAGGGTCGACCAAC
GGTACGGGGTTGGTGCAGGTTCTCATGGCGATGATGATGCGCAACGTCTA
CGAGAAGATCACTGGTCGAAGGGTGGCTATTTCCAGCTGA

protein sequence of Gvermi5816.t1

>Gvermi5816.t1 ID=Gvermi5816.t1|Name=Gvermi5816.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=430bp
MAPAFIPAAALAASGRARPSAAVTSRRAFFGAVPAVQRARCERRVPVRAA
APRAAAVTTDNWVKAPGAERSHHHADAKIAANVSHAMERKGISRPVIIGV
AADSGCGKSTFLRRVTSIFGTKVSKAHTPVGDFISVICLDDYHTHDRKGR
REARVTALDERANNFDLMASQIAALKEGKSIMKPIYNHETGEIDPPELIE
PNHVIVIEGLHPMYDERVRELLDFSVYLDLADEVKIAWKIQRDMAERGHS
LENILASIESRKPDFERFVDPQKKNCDVVMEILPTQLIPDDTERKVLRVR
LLQDETCKLLDPVYLYDEGSTIDWIPCGRKLTCSYPGIKFHYGPDSYFDK
PVSVFEVDGGFEKLDEMVYVETHIERAGTKFFGEITQSLLRNPNAPGSTN
GTGLVQVLMAMMMRNVYEKITGRRVAISS*

mRNA from alignment at ScGOVlb_1708:177640..178929-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi5816.t1 ID=Gvermi5816.t1|Name=Gvermi5816.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at ScGOVlb_1708:177640..178929- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCCGCCTTCATCCCCGCCGCCGCGCTCGCCGCCTCCGGCCGCGC
GCGCCCCTCCGCCGCTGTCACCTCGAGGCGCGCCTTCTTCGGCGCCGTCC
CGGCCGTGCAGCGCGCGCGATGCGAGCGCCGCGTGCCCGTGCGCGCCGCC
GCGCCGCGCGCCGCCGCTGTCACCACCGACAACTGGGTCAAGGCGCCGGG
CGCGGAGCGCTCCCACCACCACGCCGACGCCAAGATTGCCGCCAACGTGT
CGCACGCCATGGAGCGCAAGGGCATCTCGCGCCCCGTCATCATTGGCGTG
GCGGCCGACTCGGGCTGCGGCAAGTCCACCTTCCTGCGGAGGGTCACCAG
CATTTTCGGCACCAAGGTCAGCAAGGCGCACACGCCGGTGGGCGACTTCA
TTTCCGTCATTTGCCTGGATGACTACCATACGCACGACAGAAAGGGGCGG
AGGGAGGCAAGGGTCACTGCCTTGGACGAACGCGCCAACAACTTTGATCT
GATGGCTAGCCAGATAGCCGCGCTCAAGGAAGGCAAGAGCATCATGAAGC
CGATTTACAACCACGAAACGGGCGAGATTGATCCGCCGGAGCTCATCGAA
CCGAACCACGTGATCGTCATCGAGGGGCTGCATCCCATGTACGACGAACG
GGTGAGAGAACTCCTGGACTTCAGCGTATACCTGGATTTGGCCGACGAAG
TGAAGATTGCGTGGAAGATTCAGAGAGACATGGCCGAACGCGGCCATTCC
TTGGAGAACATCCTGGCCAGTATTGAGTCGCGAAAGCCGGACTTTGAACG
CTTTGTGGACCCTCAAAAGAAGAACTGCGATGTGGTCATGGAGATCTTGC
CCACACAACTGATCCCGGATGACACTGAGAGAAAGGTGTTGCGAGTTCGG
CTGCTGCAAGATGAAACGTGCAAACTGCTGGACCCGGTGTATCTGTACGA
CGAGGGCTCCACCATTGACTGGATTCCGTGCGGCCGAAAGCTCACGTGCT
CGTACCCGGGTATTAAGTTCCATTACGGACCAGATTCTTACTTTGACAAG
CCAGTGTCGGTGTTTGAGGTTGACGGGGGCTTTGAGAAGCTTGACGAAAT
GGTGTACGTTGAAACACACATCGAGCGGGCTGGCACCAAGTTCTTTGGCG
AAATCACGCAGTCTTTGCTGAGGAACCCAAACGCGCCAGGGTCGACCAAC
GGTACGGGGTTGGTGCAGGTTCTCATGGCGATGATGATGCGCAACGTCTA
CGAGAAGATCACTGGTCGAAGGGTGGCTATTTCCAGCTGA

Coding sequence (CDS) from alignment at ScGOVlb_1708:177640..178929-

>Gvermi5816.t1 ID=Gvermi5816.t1|Name=Gvermi5816.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1290bp|location=Sequence derived from alignment at ScGOVlb_1708:177640..178929- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCCGCCTTCATCCCCGCCGCCGCGCTCGCCGCCTCCGGCCGCGC
GCGCCCCTCCGCCGCTGTCACCTCGAGGCGCGCCTTCTTCGGCGCCGTCC
CGGCCGTGCAGCGCGCGCGATGCGAGCGCCGCGTGCCCGTGCGCGCCGCC
GCGCCGCGCGCCGCCGCTGTCACCACCGACAACTGGGTCAAGGCGCCGGG
CGCGGAGCGCTCCCACCACCACGCCGACGCCAAGATTGCCGCCAACGTGT
CGCACGCCATGGAGCGCAAGGGCATCTCGCGCCCCGTCATCATTGGCGTG
GCGGCCGACTCGGGCTGCGGCAAGTCCACCTTCCTGCGGAGGGTCACCAG
CATTTTCGGCACCAAGGTCAGCAAGGCGCACACGCCGGTGGGCGACTTCA
TTTCCGTCATTTGCCTGGATGACTACCATACGCACGACAGAAAGGGGCGG
AGGGAGGCAAGGGTCACTGCCTTGGACGAACGCGCCAACAACTTTGATCT
GATGGCTAGCCAGATAGCCGCGCTCAAGGAAGGCAAGAGCATCATGAAGC
CGATTTACAACCACGAAACGGGCGAGATTGATCCGCCGGAGCTCATCGAA
CCGAACCACGTGATCGTCATCGAGGGGCTGCATCCCATGTACGACGAACG
GGTGAGAGAACTCCTGGACTTCAGCGTATACCTGGATTTGGCCGACGAAG
TGAAGATTGCGTGGAAGATTCAGAGAGACATGGCCGAACGCGGCCATTCC
TTGGAGAACATCCTGGCCAGTATTGAGTCGCGAAAGCCGGACTTTGAACG
CTTTGTGGACCCTCAAAAGAAGAACTGCGATGTGGTCATGGAGATCTTGC
CCACACAACTGATCCCGGATGACACTGAGAGAAAGGTGTTGCGAGTTCGG
CTGCTGCAAGATGAAACGTGCAAACTGCTGGACCCGGTGTATCTGTACGA
CGAGGGCTCCACCATTGACTGGATTCCGTGCGGCCGAAAGCTCACGTGCT
CGTACCCGGGTATTAAGTTCCATTACGGACCAGATTCTTACTTTGACAAG
CCAGTGTCGGTGTTTGAGGTTGACGGGGGCTTTGAGAAGCTTGACGAAAT
GGTGTACGTTGAAACACACATCGAGCGGGCTGGCACCAAGTTCTTTGGCG
AAATCACGCAGTCTTTGCTGAGGAACCCAAACGCGCCAGGGTCGACCAAC
GGTACGGGGTTGGTGCAGGTTCTCATGGCGATGATGATGCGCAACGTCTA
CGAGAAGATCACTGGTCGAAGGGTGGCTATTTCCAGCTGA