Gvermi5765.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5765.t1
Unique NameGvermi5765.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:1559569..1560426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5765Gvermi5765Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 1559569..1560426 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5765.t1.stop1Gvermi5765.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 1559569..1559571 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5765.t1.CDS1Gvermi5765.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 1559569..1560426 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5765.t1.exon1Gvermi5765.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 1559569..1560426 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5765.t1.start1Gvermi5765.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 1560424..1560426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5765.t1Gvermi5765.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 1559569..1560426 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5765.t1 ID=Gvermi5765.t1|Name=Gvermi5765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=286bp
MNQAVCTFKEQSHTMNGTAMMVALAQVQTSIVDHSADIVQDILCDLISKA
VDRSDLFQIRTKCICSQCGNRTKVPTTAEIDSIKLNIISYVTRSPSIECF
ANLLRRISRFGCVTKSLENWIPPSGDGNIQIAIDFRIGLAHRYSEHLSSE
NRKEQLSIKQLLPAAFEGYAKEPWILRYFDVDPYENAAIKHVLDKEIDLI
RKLYRRAASEDRSDRFVSAGNYPVFKLFMSCYLESIRGGSSSMKDFAMHF
IGGLHIKKQGLFRVVKHFALGPELESLIDCTGLRE*
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spliced messenger RNA

>Gvermi5765.t1 ID=Gvermi5765.t1|Name=Gvermi5765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=858bp|location=Sequence derived from alignment at ScGOVlb_776:1559569..1560426- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCAAGCCGTTTGTACTTTCAAGGAGCAGTCTCATACAATGAACGG
CACTGCTATGATGGTGGCACTAGCACAAGTACAGACATCTATCGTGGATC
ACAGTGCAGATATCGTTCAGGATATTCTTTGTGACTTAATATCAAAAGCT
GTTGATCGCAGTGATCTGTTTCAAATCAGGACTAAATGCATATGTTCGCA
GTGTGGCAATCGCACTAAAGTTCCTACTACTGCGGAAATAGATAGCATAA
AATTAAACATAATATCGTATGTTACCCGCTCTCCGTCTATTGAATGCTTT
GCTAATCTACTCAGACGAATTTCTAGATTTGGTTGCGTCACGAAATCCCT
TGAGAACTGGATACCGCCGAGTGGTGATGGGAACATTCAAATCGCGATCG
ATTTCCGGATTGGATTGGCACACAGATACAGTGAGCACTTGAGTTCTGAA
AATAGAAAGGAACAACTGAGTATAAAGCAATTGCTTCCTGCTGCCTTTGA
GGGATACGCCAAAGAGCCGTGGATATTGCGATATTTCGATGTCGACCCTT
ATGAAAATGCAGCTATAAAACATGTGCTTGACAAGGAGATTGATCTGATT
CGAAAACTCTATCGTCGTGCAGCCTCTGAGGATCGAAGTGACAGATTCGT
TTCTGCTGGGAACTATCCCGTTTTTAAGTTGTTTATGTCTTGTTACTTGG
AATCTATTCGTGGAGGATCATCATCTATGAAGGATTTTGCTATGCATTTT
ATTGGCGGCTTGCATATAAAGAAGCAAGGACTGTTTCGTGTTGTTAAACA
CTTCGCTCTTGGGCCTGAGCTTGAATCATTAATAGACTGCACTGGTTTAA
GAGAATAA
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protein sequence of Gvermi5765.t1

>Gvermi5765.t1 ID=Gvermi5765.t1|Name=Gvermi5765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=286bp
MNQAVCTFKEQSHTMNGTAMMVALAQVQTSIVDHSADIVQDILCDLISKA
VDRSDLFQIRTKCICSQCGNRTKVPTTAEIDSIKLNIISYVTRSPSIECF
ANLLRRISRFGCVTKSLENWIPPSGDGNIQIAIDFRIGLAHRYSEHLSSE
NRKEQLSIKQLLPAAFEGYAKEPWILRYFDVDPYENAAIKHVLDKEIDLI
RKLYRRAASEDRSDRFVSAGNYPVFKLFMSCYLESIRGGSSSMKDFAMHF
IGGLHIKKQGLFRVVKHFALGPELESLIDCTGLRE*
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mRNA from alignment at ScGOVlb_776:1559569..1560426-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5765.t1 ID=Gvermi5765.t1|Name=Gvermi5765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=858bp|location=Sequence derived from alignment at ScGOVlb_776:1559569..1560426- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCAAGCCGTTTGTACTTTCAAGGAGCAGTCTCATACAATGAACGG
CACTGCTATGATGGTGGCACTAGCACAAGTACAGACATCTATCGTGGATC
ACAGTGCAGATATCGTTCAGGATATTCTTTGTGACTTAATATCAAAAGCT
GTTGATCGCAGTGATCTGTTTCAAATCAGGACTAAATGCATATGTTCGCA
GTGTGGCAATCGCACTAAAGTTCCTACTACTGCGGAAATAGATAGCATAA
AATTAAACATAATATCGTATGTTACCCGCTCTCCGTCTATTGAATGCTTT
GCTAATCTACTCAGACGAATTTCTAGATTTGGTTGCGTCACGAAATCCCT
TGAGAACTGGATACCGCCGAGTGGTGATGGGAACATTCAAATCGCGATCG
ATTTCCGGATTGGATTGGCACACAGATACAGTGAGCACTTGAGTTCTGAA
AATAGAAAGGAACAACTGAGTATAAAGCAATTGCTTCCTGCTGCCTTTGA
GGGATACGCCAAAGAGCCGTGGATATTGCGATATTTCGATGTCGACCCTT
ATGAAAATGCAGCTATAAAACATGTGCTTGACAAGGAGATTGATCTGATT
CGAAAACTCTATCGTCGTGCAGCCTCTGAGGATCGAAGTGACAGATTCGT
TTCTGCTGGGAACTATCCCGTTTTTAAGTTGTTTATGTCTTGTTACTTGG
AATCTATTCGTGGAGGATCATCATCTATGAAGGATTTTGCTATGCATTTT
ATTGGCGGCTTGCATATAAAGAAGCAAGGACTGTTTCGTGTTGTTAAACA
CTTCGCTCTTGGGCCTGAGCTTGAATCATTAATAGACTGCACTGGTTTAA
GAGAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_776:1559569..1560426-

>Gvermi5765.t1 ID=Gvermi5765.t1|Name=Gvermi5765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=858bp|location=Sequence derived from alignment at ScGOVlb_776:1559569..1560426- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCAAGCCGTTTGTACTTTCAAGGAGCAGTCTCATACAATGAACGG
CACTGCTATGATGGTGGCACTAGCACAAGTACAGACATCTATCGTGGATC
ACAGTGCAGATATCGTTCAGGATATTCTTTGTGACTTAATATCAAAAGCT
GTTGATCGCAGTGATCTGTTTCAAATCAGGACTAAATGCATATGTTCGCA
GTGTGGCAATCGCACTAAAGTTCCTACTACTGCGGAAATAGATAGCATAA
AATTAAACATAATATCGTATGTTACCCGCTCTCCGTCTATTGAATGCTTT
GCTAATCTACTCAGACGAATTTCTAGATTTGGTTGCGTCACGAAATCCCT
TGAGAACTGGATACCGCCGAGTGGTGATGGGAACATTCAAATCGCGATCG
ATTTCCGGATTGGATTGGCACACAGATACAGTGAGCACTTGAGTTCTGAA
AATAGAAAGGAACAACTGAGTATAAAGCAATTGCTTCCTGCTGCCTTTGA
GGGATACGCCAAAGAGCCGTGGATATTGCGATATTTCGATGTCGACCCTT
ATGAAAATGCAGCTATAAAACATGTGCTTGACAAGGAGATTGATCTGATT
CGAAAACTCTATCGTCGTGCAGCCTCTGAGGATCGAAGTGACAGATTCGT
TTCTGCTGGGAACTATCCCGTTTTTAAGTTGTTTATGTCTTGTTACTTGG
AATCTATTCGTGGAGGATCATCATCTATGAAGGATTTTGCTATGCATTTT
ATTGGCGGCTTGCATATAAAGAAGCAAGGACTGTTTCGTGTTGTTAAACA
CTTCGCTCTTGGGCCTGAGCTTGAATCATTAATAGACTGCACTGGTTTAA
GAGAATAA
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