Gvermi5674.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5674.t1
Unique NameGvermi5674.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length444
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:972643..973974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5674Gvermi5674Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 972643..973974 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5674.t1.stop1Gvermi5674.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 972643..972645 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5674.t1.CDS1Gvermi5674.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 972643..973974 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5674.t1.exon1Gvermi5674.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 972643..973974 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5674.t1.start1Gvermi5674.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 973972..973974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5674.t1Gvermi5674.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 972643..973974 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5674.t1 ID=Gvermi5674.t1|Name=Gvermi5674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=444bp
MVISRKRKRSSLRASSTEDYADGDPPPFAPAQLSMYKAYRGPLPRSITSG
LSPLLLNLILMAGERLKARDFVSAAALLPSLLKRYRKVKTHRWYFSREIA
VTGAEVLRRSGGQYAQLLDDFLSHISRDGHLSSKSGHEGYSASTRVCVLM
ERVMELLAAGDLRTAYECLSEESKDPYFSSSPLVQGYLGVVAVAASSMDR
DPAPKLREAATALSTASSIEPKLYFYTYYAVATAIASGEKDQALLLLRDF
VNKKNRTDPLALYGLLTCLGTLTTRDTDEVKQERIEIARRLLEIDPVSKP
ALDIIREAHSWAWNVRPKVYVVEVAEALASRIENGDFANVSIWTELGNVL
CKAEPECRNKFWVSTGRNEWWPSHFFRHSRFNLDMTSDPNLASAKAAVDW
MLSFPVVSMYALEARSRGVPNVFRFLSKEQLTEDHSQEDPRGR*
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spliced messenger RNA

>Gvermi5674.t1 ID=Gvermi5674.t1|Name=Gvermi5674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at ScGOVlb_776:972643..973974- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAATCAGCCGCAAGCGCAAGCGCTCGTCGCTACGCGCCTCAAGCAC
AGAAGACTATGCCGACGGTGATCCACCTCCGTTCGCACCGGCGCAGCTCT
CAATGTACAAGGCGTATCGCGGCCCTTTGCCTCGATCAATAACCTCTGGC
CTTTCTCCACTCCTACTCAATTTGATCCTCATGGCGGGAGAGAGGCTCAA
GGCTCGCGACTTTGTTTCTGCCGCTGCCCTTCTCCCTTCACTTCTGAAGC
GATACAGAAAAGTCAAGACACACCGTTGGTACTTTTCGCGTGAAATAGCT
GTAACCGGTGCAGAAGTGTTGCGTAGAAGCGGCGGTCAATATGCACAATT
GCTCGATGATTTCCTCTCCCACATTAGTCGCGATGGTCATTTGTCATCAA
AATCTGGGCATGAAGGTTACAGCGCTTCTACAAGAGTGTGTGTGCTCATG
GAAAGAGTTATGGAACTCTTAGCAGCAGGTGATCTGCGCACTGCTTACGA
GTGTTTGTCGGAAGAGAGCAAAGATCCCTATTTCAGTTCCAGTCCATTAG
TGCAAGGGTACTTGGGTGTTGTCGCTGTTGCAGCAAGCTCTATGGACCGA
GACCCGGCCCCCAAGCTGCGGGAGGCAGCGACAGCCCTTAGCACGGCATC
GTCTATCGAACCAAAGCTGTACTTCTATACATACTACGCAGTAGCTACTG
CAATTGCGTCCGGAGAAAAAGATCAAGCTCTTCTTCTATTACGAGATTTT
GTCAATAAGAAGAACCGCACAGATCCATTGGCGCTTTATGGATTGTTGAC
TTGTCTTGGGACGCTCACCACGCGGGATACAGACGAAGTCAAACAGGAAC
GTATTGAAATTGCAAGACGACTCTTAGAAATAGATCCAGTGTCAAAACCG
GCGCTTGACATAATACGCGAAGCACATTCGTGGGCATGGAATGTTCGTCC
GAAAGTCTACGTTGTCGAGGTAGCGGAGGCTTTGGCTTCTCGAATTGAAA
ATGGCGATTTCGCAAATGTGTCGATTTGGACAGAGCTCGGTAATGTTCTG
TGCAAAGCTGAACCAGAATGTCGAAATAAGTTCTGGGTGTCAACTGGAAG
AAACGAATGGTGGCCATCCCACTTCTTCCGACATTCTCGATTCAACTTAG
ATATGACAAGTGATCCAAACTTGGCTTCTGCAAAAGCAGCCGTAGATTGG
ATGCTTTCATTTCCGGTTGTAAGTATGTATGCTTTAGAAGCTAGAAGCAG
AGGAGTTCCCAACGTATTCCGCTTTCTCTCAAAGGAACAGTTGACTGAAG
ACCATTCCCAGGAAGATCCACGAGGGCGATAA
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protein sequence of Gvermi5674.t1

>Gvermi5674.t1 ID=Gvermi5674.t1|Name=Gvermi5674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=444bp
MVISRKRKRSSLRASSTEDYADGDPPPFAPAQLSMYKAYRGPLPRSITSG
LSPLLLNLILMAGERLKARDFVSAAALLPSLLKRYRKVKTHRWYFSREIA
VTGAEVLRRSGGQYAQLLDDFLSHISRDGHLSSKSGHEGYSASTRVCVLM
ERVMELLAAGDLRTAYECLSEESKDPYFSSSPLVQGYLGVVAVAASSMDR
DPAPKLREAATALSTASSIEPKLYFYTYYAVATAIASGEKDQALLLLRDF
VNKKNRTDPLALYGLLTCLGTLTTRDTDEVKQERIEIARRLLEIDPVSKP
ALDIIREAHSWAWNVRPKVYVVEVAEALASRIENGDFANVSIWTELGNVL
CKAEPECRNKFWVSTGRNEWWPSHFFRHSRFNLDMTSDPNLASAKAAVDW
MLSFPVVSMYALEARSRGVPNVFRFLSKEQLTEDHSQEDPRGR*
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mRNA from alignment at ScGOVlb_776:972643..973974-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5674.t1 ID=Gvermi5674.t1|Name=Gvermi5674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at ScGOVlb_776:972643..973974- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTAATCAGCCGCAAGCGCAAGCGCTCGTCGCTACGCGCCTCAAGCAC
AGAAGACTATGCCGACGGTGATCCACCTCCGTTCGCACCGGCGCAGCTCT
CAATGTACAAGGCGTATCGCGGCCCTTTGCCTCGATCAATAACCTCTGGC
CTTTCTCCACTCCTACTCAATTTGATCCTCATGGCGGGAGAGAGGCTCAA
GGCTCGCGACTTTGTTTCTGCCGCTGCCCTTCTCCCTTCACTTCTGAAGC
GATACAGAAAAGTCAAGACACACCGTTGGTACTTTTCGCGTGAAATAGCT
GTAACCGGTGCAGAAGTGTTGCGTAGAAGCGGCGGTCAATATGCACAATT
GCTCGATGATTTCCTCTCCCACATTAGTCGCGATGGTCATTTGTCATCAA
AATCTGGGCATGAAGGTTACAGCGCTTCTACAAGAGTGTGTGTGCTCATG
GAAAGAGTTATGGAACTCTTAGCAGCAGGTGATCTGCGCACTGCTTACGA
GTGTTTGTCGGAAGAGAGCAAAGATCCCTATTTCAGTTCCAGTCCATTAG
TGCAAGGGTACTTGGGTGTTGTCGCTGTTGCAGCAAGCTCTATGGACCGA
GACCCGGCCCCCAAGCTGCGGGAGGCAGCGACAGCCCTTAGCACGGCATC
GTCTATCGAACCAAAGCTGTACTTCTATACATACTACGCAGTAGCTACTG
CAATTGCGTCCGGAGAAAAAGATCAAGCTCTTCTTCTATTACGAGATTTT
GTCAATAAGAAGAACCGCACAGATCCATTGGCGCTTTATGGATTGTTGAC
TTGTCTTGGGACGCTCACCACGCGGGATACAGACGAAGTCAAACAGGAAC
GTATTGAAATTGCAAGACGACTCTTAGAAATAGATCCAGTGTCAAAACCG
GCGCTTGACATAATACGCGAAGCACATTCGTGGGCATGGAATGTTCGTCC
GAAAGTCTACGTTGTCGAGGTAGCGGAGGCTTTGGCTTCTCGAATTGAAA
ATGGCGATTTCGCAAATGTGTCGATTTGGACAGAGCTCGGTAATGTTCTG
TGCAAAGCTGAACCAGAATGTCGAAATAAGTTCTGGGTGTCAACTGGAAG
AAACGAATGGTGGCCATCCCACTTCTTCCGACATTCTCGATTCAACTTAG
ATATGACAAGTGATCCAAACTTGGCTTCTGCAAAAGCAGCCGTAGATTGG
ATGCTTTCATTTCCGGTTGTAAGTATGTATGCTTTAGAAGCTAGAAGCAG
AGGAGTTCCCAACGTATTCCGCTTTCTCTCAAAGGAACAGTTGACTGAAG
ACCATTCCCAGGAAGATCCACGAGGGCGATAA
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Coding sequence (CDS) from alignment at ScGOVlb_776:972643..973974-

>Gvermi5674.t1 ID=Gvermi5674.t1|Name=Gvermi5674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1332bp|location=Sequence derived from alignment at ScGOVlb_776:972643..973974- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTAATCAGCCGCAAGCGCAAGCGCTCGTCGCTACGCGCCTCAAGCAC
AGAAGACTATGCCGACGGTGATCCACCTCCGTTCGCACCGGCGCAGCTCT
CAATGTACAAGGCGTATCGCGGCCCTTTGCCTCGATCAATAACCTCTGGC
CTTTCTCCACTCCTACTCAATTTGATCCTCATGGCGGGAGAGAGGCTCAA
GGCTCGCGACTTTGTTTCTGCCGCTGCCCTTCTCCCTTCACTTCTGAAGC
GATACAGAAAAGTCAAGACACACCGTTGGTACTTTTCGCGTGAAATAGCT
GTAACCGGTGCAGAAGTGTTGCGTAGAAGCGGCGGTCAATATGCACAATT
GCTCGATGATTTCCTCTCCCACATTAGTCGCGATGGTCATTTGTCATCAA
AATCTGGGCATGAAGGTTACAGCGCTTCTACAAGAGTGTGTGTGCTCATG
GAAAGAGTTATGGAACTCTTAGCAGCAGGTGATCTGCGCACTGCTTACGA
GTGTTTGTCGGAAGAGAGCAAAGATCCCTATTTCAGTTCCAGTCCATTAG
TGCAAGGGTACTTGGGTGTTGTCGCTGTTGCAGCAAGCTCTATGGACCGA
GACCCGGCCCCCAAGCTGCGGGAGGCAGCGACAGCCCTTAGCACGGCATC
GTCTATCGAACCAAAGCTGTACTTCTATACATACTACGCAGTAGCTACTG
CAATTGCGTCCGGAGAAAAAGATCAAGCTCTTCTTCTATTACGAGATTTT
GTCAATAAGAAGAACCGCACAGATCCATTGGCGCTTTATGGATTGTTGAC
TTGTCTTGGGACGCTCACCACGCGGGATACAGACGAAGTCAAACAGGAAC
GTATTGAAATTGCAAGACGACTCTTAGAAATAGATCCAGTGTCAAAACCG
GCGCTTGACATAATACGCGAAGCACATTCGTGGGCATGGAATGTTCGTCC
GAAAGTCTACGTTGTCGAGGTAGCGGAGGCTTTGGCTTCTCGAATTGAAA
ATGGCGATTTCGCAAATGTGTCGATTTGGACAGAGCTCGGTAATGTTCTG
TGCAAAGCTGAACCAGAATGTCGAAATAAGTTCTGGGTGTCAACTGGAAG
AAACGAATGGTGGCCATCCCACTTCTTCCGACATTCTCGATTCAACTTAG
ATATGACAAGTGATCCAAACTTGGCTTCTGCAAAAGCAGCCGTAGATTGG
ATGCTTTCATTTCCGGTTGTAAGTATGTATGCTTTAGAAGCTAGAAGCAG
AGGAGTTCCCAACGTATTCCGCTTTCTCTCAAAGGAACAGTTGACTGAAG
ACCATTCCCAGGAAGATCCACGAGGGCGATAA
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