Gvermi5663.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5663.t1
Unique NameGvermi5663.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length277
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:936195..937025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704755.1
PFAMsSpoIIE
Max annot lvl2759|Eukaryota
KEGG koko:K17508
Evalue5.73e-50
EggNOG OGsCOG0631@1|root,KOG1379@2759|Eukaryota
EC3.1.3.16
Descriptionphosphoprotein phosphatase activity
COG categoryT
BRITEko00000,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5663Gvermi5663Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 936195..937025 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5663.t1.start1Gvermi5663.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 936195..936197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5663.t1.CDS1Gvermi5663.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 936195..937025 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5663.t1.exon1Gvermi5663.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 936195..937025 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5663.t1.stop1Gvermi5663.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 937023..937025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5663.t1Gvermi5663.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 936195..937025 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5663.t1 ID=Gvermi5663.t1|Name=Gvermi5663.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=277bp
MLFNWGKLWSSEEPDTPQKLNWSIGYSYLAHPEKNTGEDAFFVEGNAIGV
FDGVSGAFETRGVDPRLYSQTLAALTRDLVRELGAANVVKAAYRAAEQNG
QVGASTACVVGMDRYARLFGINLGDSGVRVVRGSKLLFRTREQQHFFNCP
YQLGTDSEDALAMGQNVQQKLASGDWVIVATDGLFDNVSNEDIVAEAAAA
GDAMQLAERLGELAAARAVDSTFASPFMAAAAQAGVAWQGGKADDITVVV
ARVEEDERLGVTSLLSTLPETADAAE*
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spliced messenger RNA

>Gvermi5663.t1 ID=Gvermi5663.t1|Name=Gvermi5663.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=831bp|location=Sequence derived from alignment at ScGOVlb_776:936195..937025+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTTCAACTGGGGCAAGCTGTGGTCGTCCGAGGAGCCGGACACGCC
GCAAAAGCTGAACTGGTCGATCGGGTACAGCTACCTGGCGCACCCGGAGA
AGAACACGGGCGAGGACGCGTTCTTCGTGGAGGGCAACGCGATCGGGGTG
TTTGACGGGGTGTCCGGGGCGTTCGAGACGCGCGGCGTGGACCCGCGGCT
GTACAGCCAGACGCTAGCGGCGCTGACGCGCGACCTGGTGCGCGAGCTGG
GCGCCGCCAACGTGGTGAAGGCGGCGTACCGGGCGGCGGAGCAGAACGGG
CAGGTGGGGGCGTCGACGGCGTGCGTGGTGGGCATGGACCGGTATGCGCG
GTTGTTCGGCATCAACCTGGGCGACTCGGGGGTGCGCGTTGTGCGGGGGA
GCAAGCTGCTGTTCCGCACTCGCGAGCAGCAGCACTTCTTCAACTGCCCG
TACCAGCTGGGGACGGACAGCGAGGACGCGCTGGCCATGGGACAGAACGT
CCAGCAGAAGCTGGCGAGCGGCGACTGGGTCATTGTGGCGACGGATGGGC
TGTTCGATAATGTGAGCAACGAGGACATTGTggcggaggcggcggcggcg
ggggatgcgatgcagctggcggagcggctgggcgagctggcggcggcgcg
cgcggtggacagcacgttcgccagccctttcatggcggcggcggcgcagg
cgggcgtggcgtggcagggcggcAAAGCCGATGACATCACCGTTGTCGTG
GCTCGCGTGGAGGAGGACGAGCGGCTGGGCGTGACCAGCCTGCTGTCGAC
GCTGCCGGAGACGGCCGACGCCGCTGAGTAA
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protein sequence of Gvermi5663.t1

>Gvermi5663.t1 ID=Gvermi5663.t1|Name=Gvermi5663.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=277bp
MLFNWGKLWSSEEPDTPQKLNWSIGYSYLAHPEKNTGEDAFFVEGNAIGV
FDGVSGAFETRGVDPRLYSQTLAALTRDLVRELGAANVVKAAYRAAEQNG
QVGASTACVVGMDRYARLFGINLGDSGVRVVRGSKLLFRTREQQHFFNCP
YQLGTDSEDALAMGQNVQQKLASGDWVIVATDGLFDNVSNEDIVAEAAAA
GDAMQLAERLGELAAARAVDSTFASPFMAAAAQAGVAWQGGKADDITVVV
ARVEEDERLGVTSLLSTLPETADAAE*
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mRNA from alignment at ScGOVlb_776:936195..937025+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5663.t1 ID=Gvermi5663.t1|Name=Gvermi5663.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=831bp|location=Sequence derived from alignment at ScGOVlb_776:936195..937025+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGTTCAACTGGGGCAAGCTGTGGTCGTCCGAGGAGCCGGACACGCC
GCAAAAGCTGAACTGGTCGATCGGGTACAGCTACCTGGCGCACCCGGAGA
AGAACACGGGCGAGGACGCGTTCTTCGTGGAGGGCAACGCGATCGGGGTG
TTTGACGGGGTGTCCGGGGCGTTCGAGACGCGCGGCGTGGACCCGCGGCT
GTACAGCCAGACGCTAGCGGCGCTGACGCGCGACCTGGTGCGCGAGCTGG
GCGCCGCCAACGTGGTGAAGGCGGCGTACCGGGCGGCGGAGCAGAACGGG
CAGGTGGGGGCGTCGACGGCGTGCGTGGTGGGCATGGACCGGTATGCGCG
GTTGTTCGGCATCAACCTGGGCGACTCGGGGGTGCGCGTTGTGCGGGGGA
GCAAGCTGCTGTTCCGCACTCGCGAGCAGCAGCACTTCTTCAACTGCCCG
TACCAGCTGGGGACGGACAGCGAGGACGCGCTGGCCATGGGACAGAACGT
CCAGCAGAAGCTGGCGAGCGGCGACTGGGTCATTGTGGCGACGGATGGGC
TGTTCGATAATGTGAGCAACGAGGACATTGTggcggaggcggcggcggcg
ggggatgcgatgcagctggcggagcggctgggcgagctggcggcggcgcg
cgcggtggacagcacgttcgccagccctttcatggcggcggcggcgcagg
cgggcgtggcgtggcagggcggcAAAGCCGATGACATCACCGTTGTCGTG
GCTCGCGTGGAGGAGGACGAGCGGCTGGGCGTGACCAGCCTGCTGTCGAC
GCTGCCGGAGACGGCCGACGCCGCTGAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_776:936195..937025+

>Gvermi5663.t1 ID=Gvermi5663.t1|Name=Gvermi5663.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=831bp|location=Sequence derived from alignment at ScGOVlb_776:936195..937025+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGTTCAACTGGGGCAAGCTGTGGTCGTCCGAGGAGCCGGACACGCC
GCAAAAGCTGAACTGGTCGATCGGGTACAGCTACCTGGCGCACCCGGAGA
AGAACACGGGCGAGGACGCGTTCTTCGTGGAGGGCAACGCGATCGGGGTG
TTTGACGGGGTGTCCGGGGCGTTCGAGACGCGCGGCGTGGACCCGCGGCT
GTACAGCCAGACGCTAGCGGCGCTGACGCGCGACCTGGTGCGCGAGCTGG
GCGCCGCCAACGTGGTGAAGGCGGCGTACCGGGCGGCGGAGCAGAACGGG
CAGGTGGGGGCGTCGACGGCGTGCGTGGTGGGCATGGACCGGTATGCGCG
GTTGTTCGGCATCAACCTGGGCGACTCGGGGGTGCGCGTTGTGCGGGGGA
GCAAGCTGCTGTTCCGCACTCGCGAGCAGCAGCACTTCTTCAACTGCCCG
TACCAGCTGGGGACGGACAGCGAGGACGCGCTGGCCATGGGACAGAACGT
CCAGCAGAAGCTGGCGAGCGGCGACTGGGTCATTGTGGCGACGGATGGGC
TGTTCGATAATGTGAGCAACGAGGACATTGTggcggaggcggcggcggcg
ggggatgcgatgcagctggcggagcggctgggcgagctggcggcggcgcg
cgcggtggacagcacgttcgccagccctttcatggcggcggcggcgcagg
cgggcgtggcgtggcagggcggcAAAGCCGATGACATCACCGTTGTCGTG
GCTCGCGTGGAGGAGGACGAGCGGCTGGGCGTGACCAGCCTGCTGTCGAC
GCTGCCGGAGACGGCCGACGCCGCTGAGTAA
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