Gvermi5571.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5571.t1
Unique NameGvermi5571.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length292
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:607045..607920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX33502
Preferred nameCMS
PFAMsIspD
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00991
KEGG ReactionR05633
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046490,GO:0050518,GO:0070567,GO:0071704,GO:0090407,GO:1901135,GO:1901576
Evalue1.09e-89
EggNOG OGsCOG1211@1|root,2QUUE@2759|Eukaryota
EC2.7.7.60
DescriptionD-ribitol-5-phosphate cytidylyltransferase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5571Gvermi5571Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 607045..607920 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5571.t1.stop1Gvermi5571.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 607045..607047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5571.t1.CDS1Gvermi5571.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 607045..607920 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5571.t1.exon1Gvermi5571.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 607045..607920 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5571.t1.start1Gvermi5571.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 607918..607920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5571.t1Gvermi5571.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 607045..607920 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5571.t1 ID=Gvermi5571.t1|Name=Gvermi5571.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=292bp
MDCGAFVLHTQIIPRVKQTSSFCVQRKVFRFTTYPARRTRDIYIGRRGNV
SMVASVSEVENVSVILLAGGTGSRMKADRPKQFLHLAGKPVVEHSLLLFG
HMPEVRQLILVMDKSYQKDFKSVGKQVNCEFHFAEPGNERQDSVYNGLCK
VSSSASLVCIHDSARPLVSEESIRSVLRDGVDHGAAVLGVPSKATIKESA
DGEFVLRTIPRKRLWEIQTPQVIRPGLLTKGFEKVRQENLEVTDDVSIVE
QLGEPVKITLGEYTNIKITTPEDMDIAEAILRDRARSKALM*
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spliced messenger RNA

>Gvermi5571.t1 ID=Gvermi5571.t1|Name=Gvermi5571.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=876bp|location=Sequence derived from alignment at ScGOVlb_776:607045..607920- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTGCGGAGCATTTGTATTGCATACGCAAATCATACCACGGGTCAA
ACAAACCAGCTCATTCTGCGTACAACGAAAAGTGTTCCGTTTTACCACGT
ACCCTGCGAGACGAACTCGTGATATCTACATAGGGAGGAGAGGAAATGTG
TCAATGGTTGCATCGGTTTCGGAGGTCGAAAATGTGTCCGTAATACTCTT
AGCCGGTGGCACTGGCAGTAGAATGAAAGCAGATCGTCCGAAACAGTTTT
TGCATCTAGCTGGGAAACCTGTCGTGGAGCATTCACTACTTCTGTTTGGA
CACATGCCGGAAGTGCGACAGCTCATACTGGTGATGGATAAGTCATACCA
GAAGGACTTTAAAAGCGTTGGGAAGCAGGTCAACTGTGAGTTTCACTTTG
CAGAGCCTGGGAACGAGCGCCAAGACTCTGTCTACAACGGACTTTGTAAG
GTATCGAGTTCGGCCAGTCTTGTGTGTATTCATGACTCCGCTAGACCATT
AGTTAGTGAGGAAAGCATTCGAAGCGTCCTTCGTGATGGAGTAGACCACG
GGGCTGCCGTACTTGGAGTTCCGTCAAAAGCGACGATTAAGGAGAGTGCA
GACGGAGAGTTCGTTCTTCGCACAATTCCTCGGAAACGCCTTTGGGAAAT
TCAAACACCTCAAGTTATAAGGCCAGGTTTGTTAACGAAAGGATTTGAAA
AGGTTCGGCAAGAAAATCTTGAAGTCACAGATGATGTCTCCATTGTGGAA
CAACTGGGAGAACCAGTCAAGATTACTCTTGGAGAGTACACGAATATCAA
AATAACAACTCCAGAAGATATGGACATAGCTGAGGCAATTCTAAGAGATA
GGGCGCGATCCAAAGCACTGATGTAA
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protein sequence of Gvermi5571.t1

>Gvermi5571.t1 ID=Gvermi5571.t1|Name=Gvermi5571.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=292bp
MDCGAFVLHTQIIPRVKQTSSFCVQRKVFRFTTYPARRTRDIYIGRRGNV
SMVASVSEVENVSVILLAGGTGSRMKADRPKQFLHLAGKPVVEHSLLLFG
HMPEVRQLILVMDKSYQKDFKSVGKQVNCEFHFAEPGNERQDSVYNGLCK
VSSSASLVCIHDSARPLVSEESIRSVLRDGVDHGAAVLGVPSKATIKESA
DGEFVLRTIPRKRLWEIQTPQVIRPGLLTKGFEKVRQENLEVTDDVSIVE
QLGEPVKITLGEYTNIKITTPEDMDIAEAILRDRARSKALM*
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mRNA from alignment at ScGOVlb_776:607045..607920-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5571.t1 ID=Gvermi5571.t1|Name=Gvermi5571.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=876bp|location=Sequence derived from alignment at ScGOVlb_776:607045..607920- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTGCGGAGCATTTGTATTGCATACGCAAATCATACCACGGGTCAA
ACAAACCAGCTCATTCTGCGTACAACGAAAAGTGTTCCGTTTTACCACGT
ACCCTGCGAGACGAACTCGTGATATCTACATAGGGAGGAGAGGAAATGTG
TCAATGGTTGCATCGGTTTCGGAGGTCGAAAATGTGTCCGTAATACTCTT
AGCCGGTGGCACTGGCAGTAGAATGAAAGCAGATCGTCCGAAACAGTTTT
TGCATCTAGCTGGGAAACCTGTCGTGGAGCATTCACTACTTCTGTTTGGA
CACATGCCGGAAGTGCGACAGCTCATACTGGTGATGGATAAGTCATACCA
GAAGGACTTTAAAAGCGTTGGGAAGCAGGTCAACTGTGAGTTTCACTTTG
CAGAGCCTGGGAACGAGCGCCAAGACTCTGTCTACAACGGACTTTGTAAG
GTATCGAGTTCGGCCAGTCTTGTGTGTATTCATGACTCCGCTAGACCATT
AGTTAGTGAGGAAAGCATTCGAAGCGTCCTTCGTGATGGAGTAGACCACG
GGGCTGCCGTACTTGGAGTTCCGTCAAAAGCGACGATTAAGGAGAGTGCA
GACGGAGAGTTCGTTCTTCGCACAATTCCTCGGAAACGCCTTTGGGAAAT
TCAAACACCTCAAGTTATAAGGCCAGGTTTGTTAACGAAAGGATTTGAAA
AGGTTCGGCAAGAAAATCTTGAAGTCACAGATGATGTCTCCATTGTGGAA
CAACTGGGAGAACCAGTCAAGATTACTCTTGGAGAGTACACGAATATCAA
AATAACAACTCCAGAAGATATGGACATAGCTGAGGCAATTCTAAGAGATA
GGGCGCGATCCAAAGCACTGATGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_776:607045..607920-

>Gvermi5571.t1 ID=Gvermi5571.t1|Name=Gvermi5571.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=876bp|location=Sequence derived from alignment at ScGOVlb_776:607045..607920- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTGCGGAGCATTTGTATTGCATACGCAAATCATACCACGGGTCAA
ACAAACCAGCTCATTCTGCGTACAACGAAAAGTGTTCCGTTTTACCACGT
ACCCTGCGAGACGAACTCGTGATATCTACATAGGGAGGAGAGGAAATGTG
TCAATGGTTGCATCGGTTTCGGAGGTCGAAAATGTGTCCGTAATACTCTT
AGCCGGTGGCACTGGCAGTAGAATGAAAGCAGATCGTCCGAAACAGTTTT
TGCATCTAGCTGGGAAACCTGTCGTGGAGCATTCACTACTTCTGTTTGGA
CACATGCCGGAAGTGCGACAGCTCATACTGGTGATGGATAAGTCATACCA
GAAGGACTTTAAAAGCGTTGGGAAGCAGGTCAACTGTGAGTTTCACTTTG
CAGAGCCTGGGAACGAGCGCCAAGACTCTGTCTACAACGGACTTTGTAAG
GTATCGAGTTCGGCCAGTCTTGTGTGTATTCATGACTCCGCTAGACCATT
AGTTAGTGAGGAAAGCATTCGAAGCGTCCTTCGTGATGGAGTAGACCACG
GGGCTGCCGTACTTGGAGTTCCGTCAAAAGCGACGATTAAGGAGAGTGCA
GACGGAGAGTTCGTTCTTCGCACAATTCCTCGGAAACGCCTTTGGGAAAT
TCAAACACCTCAAGTTATAAGGCCAGGTTTGTTAACGAAAGGATTTGAAA
AGGTTCGGCAAGAAAATCTTGAAGTCACAGATGATGTCTCCATTGTGGAA
CAACTGGGAGAACCAGTCAAGATTACTCTTGGAGAGTACACGAATATCAA
AATAACAACTCCAGAAGATATGGACATAGCTGAGGCAATTCTAAGAGATA
GGGCGCGATCCAAAGCACTGATGTAA
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