Gvermi5552.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5552.t1
Unique NameGvermi5552.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length511
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:388506..390038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog582515.KR51_00005020
PFAMsHEAT_2,HEAT_PBS
Max annot lvl1117|Cyanobacteria
Evalue8.21e-14
EggNOG OGsCOG1413@1|root,COG1413@2|Bacteria,1G0N6@1117|Cyanobacteria
DescriptionPBS lyase HEAT-like repeat
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5552Gvermi5552Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 388506..390038 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5552.t1.stop1Gvermi5552.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 388506..388508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5552.t1.CDS1Gvermi5552.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 388506..390038 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5552.t1.exon1Gvermi5552.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 388506..390038 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5552.t1.start1Gvermi5552.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 390036..390038 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5552.t1Gvermi5552.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 388506..390038 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5552.t1 ID=Gvermi5552.t1|Name=Gvermi5552.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=511bp
MALELLQLSVQTSDNEFIRSTAILSIGQLPFDGENEAMEAVRTMADVLAT
DEDYSVRAGAAAGMGYANNVSESAKSIIFDALTRAIFEDSEWQVRFSCLA
SLGNQQDKRAVPLLIKWLNCDNDLLVQAAVGALGDIGDTSSIPELLKLLG
SSDMMTRQRLAHALGNMTEGKNEPSVIDALRTLCKDQSFAVREAADEALK
GFGCSNPVKEESRSDEELIEAEVSNLIKGDESGSAVESASDAFRRRLERS
FDKEYVQPSASENATDPDMSSDMQVLANLVEDLKAGSPMAQVMAAIQLRK
FDGKLASEAVISSNVLDSKVSTERLRAICVGLLARGGECERVINILKTDP
DQNIRSACCDALLDLGGGRSAVEACIDTFQNDSHWLVRVSAAIALGTIGK
GDEQVESVLIQSLSPEGVKDLNPPQDTVIHRHVVTALGFLGSQKALKRFE
ELILSDDTDDAVRYRIAAALRGIHCARSVSLGRLLINDSNDSVAEMAQGS
LDALAQAGYI*
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spliced messenger RNA

>Gvermi5552.t1 ID=Gvermi5552.t1|Name=Gvermi5552.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at ScGOVlb_776:388506..390038- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCTTGAGCTGCTTCAGCTAAGCGTGCAAACTTCCGACAACGAGTT
TATTAGGTCAACTGCTATCCTGTCTATCGGTCAGCTCCCATTTGATGGTG
AAAATGAGGCTATGGAAGCTGTGCGCACAATGGCTGATGTTCTAGCCACA
GACGAAGACTACTCTGTGCGCGCAGGAGCCGCTGCTGGCATGGGATATGC
GAATAACGTTTCCGAATCTGCTAAATCAATTATATTTGATGCTCTTACCC
GCGCAATATTTGAAGACTCGGAATGGCAAGTTCGATTCAGTTGCCTTGCG
TCGTTAGGTAACCAACAGGATAAGAGAGCTGTGCCCCTTTTGATCAAGTG
GCTCAATTGTGACAATGATTTGCTTGTACAAGCAGCAGTGGGTGCTTTAG
GAGATATTGGAGACACCAGTTCCATTCCAGAACTGCTAAAACTTTTAGGA
AGCTCAGACATGATGACTAGACAAAGACTGGCGCATGCCCTGGGTAACAT
GACAGAAGGAAAAAATGAACCATCAGTGATCGACGCATTGCGAACCCTTT
GCAAAGACCAATCGTTCGCAGTACGAGAAGCTGCGGATGAGGCGTTGAAG
GGCTTTGGGTGTAGTAATCCTGTGAAGGAAGAGAGCAGAAGTGACGAGGA
ACTCATCGAAGCTGAGGTCAGCAATTTAATAAAGGGTGACGAATCCGGTT
CGGCCGTCGAGTCCGCTTCTGATGCTTTCAGAAGACGTCTCGAACGCTCC
TTCGATAAAGAATATGTTCAACCATCTGCGTCCGAGAATGCCACGGATCC
AGATATGTCAAGCGACATGCAAGTCCTTGCGAATTTAGTGGAAGACCTGA
AGGCTGGAAGTCCTATGGCGCAAGTTATGGCCGCTATTCAACTCCGGAAA
TTTGACGGGAAACTTGCATCGGAAGCGGTAATATCCTCCAATGTTTTGGA
CTCAAAAGTGTCTACGGAGCGATTGAGGGCGATATGCGTCGGTCTACTTG
CGAGAGGCGGCGAATGCGAGCGAGTCATTAACATACTGAAAACAGACCCC
GATCAAAATATAAGAAGTGCGTGTTGCGACGCTCTGCTGGATCTCGGTGG
GGGCCGTTCGGCTGTGGAGGCATGTATTGACACTTTTCAGAATGATTCGC
ACTGGTTAGTGAGAGTTAGTGCTGCAATTGCTCTTGGCACTATTGGGAAA
GGTGACGAACAAGTTGAAAGTGTGCTCATACAAAGCTTAAGCCCAGAAGG
TGTCAAAGACTTGAACCCCCCACAAGATACTGTGATCCATCGACACGTAG
TTACGGCTCTCGGATTCCTTGGATCACAAAAGGCTTTAAAGCGTTTTGAA
GAACTAATTCTCTCGGACGATACCGACGATGCAGTTCGGTATCGTATCGC
GGCTGCACTGCGAGGCATACACTGTGCACGAAGCGTTTCGCTCGGGCGCT
TGCTCATTAACGATAGTAATGATTCGGTGGCAGAAATGGCACAGGGAAGT
TTGGATGCTCTCGCGCAAGCTGGGTATATCTAA
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protein sequence of Gvermi5552.t1

>Gvermi5552.t1 ID=Gvermi5552.t1|Name=Gvermi5552.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=511bp
MALELLQLSVQTSDNEFIRSTAILSIGQLPFDGENEAMEAVRTMADVLAT
DEDYSVRAGAAAGMGYANNVSESAKSIIFDALTRAIFEDSEWQVRFSCLA
SLGNQQDKRAVPLLIKWLNCDNDLLVQAAVGALGDIGDTSSIPELLKLLG
SSDMMTRQRLAHALGNMTEGKNEPSVIDALRTLCKDQSFAVREAADEALK
GFGCSNPVKEESRSDEELIEAEVSNLIKGDESGSAVESASDAFRRRLERS
FDKEYVQPSASENATDPDMSSDMQVLANLVEDLKAGSPMAQVMAAIQLRK
FDGKLASEAVISSNVLDSKVSTERLRAICVGLLARGGECERVINILKTDP
DQNIRSACCDALLDLGGGRSAVEACIDTFQNDSHWLVRVSAAIALGTIGK
GDEQVESVLIQSLSPEGVKDLNPPQDTVIHRHVVTALGFLGSQKALKRFE
ELILSDDTDDAVRYRIAAALRGIHCARSVSLGRLLINDSNDSVAEMAQGS
LDALAQAGYI*
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mRNA from alignment at ScGOVlb_776:388506..390038-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5552.t1 ID=Gvermi5552.t1|Name=Gvermi5552.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at ScGOVlb_776:388506..390038- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCTTGAGCTGCTTCAGCTAAGCGTGCAAACTTCCGACAACGAGTT
TATTAGGTCAACTGCTATCCTGTCTATCGGTCAGCTCCCATTTGATGGTG
AAAATGAGGCTATGGAAGCTGTGCGCACAATGGCTGATGTTCTAGCCACA
GACGAAGACTACTCTGTGCGCGCAGGAGCCGCTGCTGGCATGGGATATGC
GAATAACGTTTCCGAATCTGCTAAATCAATTATATTTGATGCTCTTACCC
GCGCAATATTTGAAGACTCGGAATGGCAAGTTCGATTCAGTTGCCTTGCG
TCGTTAGGTAACCAACAGGATAAGAGAGCTGTGCCCCTTTTGATCAAGTG
GCTCAATTGTGACAATGATTTGCTTGTACAAGCAGCAGTGGGTGCTTTAG
GAGATATTGGAGACACCAGTTCCATTCCAGAACTGCTAAAACTTTTAGGA
AGCTCAGACATGATGACTAGACAAAGACTGGCGCATGCCCTGGGTAACAT
GACAGAAGGAAAAAATGAACCATCAGTGATCGACGCATTGCGAACCCTTT
GCAAAGACCAATCGTTCGCAGTACGAGAAGCTGCGGATGAGGCGTTGAAG
GGCTTTGGGTGTAGTAATCCTGTGAAGGAAGAGAGCAGAAGTGACGAGGA
ACTCATCGAAGCTGAGGTCAGCAATTTAATAAAGGGTGACGAATCCGGTT
CGGCCGTCGAGTCCGCTTCTGATGCTTTCAGAAGACGTCTCGAACGCTCC
TTCGATAAAGAATATGTTCAACCATCTGCGTCCGAGAATGCCACGGATCC
AGATATGTCAAGCGACATGCAAGTCCTTGCGAATTTAGTGGAAGACCTGA
AGGCTGGAAGTCCTATGGCGCAAGTTATGGCCGCTATTCAACTCCGGAAA
TTTGACGGGAAACTTGCATCGGAAGCGGTAATATCCTCCAATGTTTTGGA
CTCAAAAGTGTCTACGGAGCGATTGAGGGCGATATGCGTCGGTCTACTTG
CGAGAGGCGGCGAATGCGAGCGAGTCATTAACATACTGAAAACAGACCCC
GATCAAAATATAAGAAGTGCGTGTTGCGACGCTCTGCTGGATCTCGGTGG
GGGCCGTTCGGCTGTGGAGGCATGTATTGACACTTTTCAGAATGATTCGC
ACTGGTTAGTGAGAGTTAGTGCTGCAATTGCTCTTGGCACTATTGGGAAA
GGTGACGAACAAGTTGAAAGTGTGCTCATACAAAGCTTAAGCCCAGAAGG
TGTCAAAGACTTGAACCCCCCACAAGATACTGTGATCCATCGACACGTAG
TTACGGCTCTCGGATTCCTTGGATCACAAAAGGCTTTAAAGCGTTTTGAA
GAACTAATTCTCTCGGACGATACCGACGATGCAGTTCGGTATCGTATCGC
GGCTGCACTGCGAGGCATACACTGTGCACGAAGCGTTTCGCTCGGGCGCT
TGCTCATTAACGATAGTAATGATTCGGTGGCAGAAATGGCACAGGGAAGT
TTGGATGCTCTCGCGCAAGCTGGGTATATCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_776:388506..390038-

>Gvermi5552.t1 ID=Gvermi5552.t1|Name=Gvermi5552.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1533bp|location=Sequence derived from alignment at ScGOVlb_776:388506..390038- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCTTGAGCTGCTTCAGCTAAGCGTGCAAACTTCCGACAACGAGTT
TATTAGGTCAACTGCTATCCTGTCTATCGGTCAGCTCCCATTTGATGGTG
AAAATGAGGCTATGGAAGCTGTGCGCACAATGGCTGATGTTCTAGCCACA
GACGAAGACTACTCTGTGCGCGCAGGAGCCGCTGCTGGCATGGGATATGC
GAATAACGTTTCCGAATCTGCTAAATCAATTATATTTGATGCTCTTACCC
GCGCAATATTTGAAGACTCGGAATGGCAAGTTCGATTCAGTTGCCTTGCG
TCGTTAGGTAACCAACAGGATAAGAGAGCTGTGCCCCTTTTGATCAAGTG
GCTCAATTGTGACAATGATTTGCTTGTACAAGCAGCAGTGGGTGCTTTAG
GAGATATTGGAGACACCAGTTCCATTCCAGAACTGCTAAAACTTTTAGGA
AGCTCAGACATGATGACTAGACAAAGACTGGCGCATGCCCTGGGTAACAT
GACAGAAGGAAAAAATGAACCATCAGTGATCGACGCATTGCGAACCCTTT
GCAAAGACCAATCGTTCGCAGTACGAGAAGCTGCGGATGAGGCGTTGAAG
GGCTTTGGGTGTAGTAATCCTGTGAAGGAAGAGAGCAGAAGTGACGAGGA
ACTCATCGAAGCTGAGGTCAGCAATTTAATAAAGGGTGACGAATCCGGTT
CGGCCGTCGAGTCCGCTTCTGATGCTTTCAGAAGACGTCTCGAACGCTCC
TTCGATAAAGAATATGTTCAACCATCTGCGTCCGAGAATGCCACGGATCC
AGATATGTCAAGCGACATGCAAGTCCTTGCGAATTTAGTGGAAGACCTGA
AGGCTGGAAGTCCTATGGCGCAAGTTATGGCCGCTATTCAACTCCGGAAA
TTTGACGGGAAACTTGCATCGGAAGCGGTAATATCCTCCAATGTTTTGGA
CTCAAAAGTGTCTACGGAGCGATTGAGGGCGATATGCGTCGGTCTACTTG
CGAGAGGCGGCGAATGCGAGCGAGTCATTAACATACTGAAAACAGACCCC
GATCAAAATATAAGAAGTGCGTGTTGCGACGCTCTGCTGGATCTCGGTGG
GGGCCGTTCGGCTGTGGAGGCATGTATTGACACTTTTCAGAATGATTCGC
ACTGGTTAGTGAGAGTTAGTGCTGCAATTGCTCTTGGCACTATTGGGAAA
GGTGACGAACAAGTTGAAAGTGTGCTCATACAAAGCTTAAGCCCAGAAGG
TGTCAAAGACTTGAACCCCCCACAAGATACTGTGATCCATCGACACGTAG
TTACGGCTCTCGGATTCCTTGGATCACAAAAGGCTTTAAAGCGTTTTGAA
GAACTAATTCTCTCGGACGATACCGACGATGCAGTTCGGTATCGTATCGC
GGCTGCACTGCGAGGCATACACTGTGCACGAAGCGTTTCGCTCGGGCGCT
TGCTCATTAACGATAGTAATGATTCGGTGGCAGAAATGGCACAGGGAAGT
TTGGATGCTCTCGCGCAAGCTGGGTATATCTAA
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