Gvermi5326.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5326.t1
Unique NameGvermi5326.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:1247100..1248704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5326Gvermi5326Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 1247100..1248704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5326.t1Gvermi5326.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 1247100..1248704 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5326.t1.start1Gvermi5326.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 1247100..1247102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5326.t1.CDS1Gvermi5326.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 1247100..1247151 +
Gvermi5326.t1.CDS2Gvermi5326.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 1247245..1248704 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5326.t1.exon1Gvermi5326.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 1247100..1247151 +
Gvermi5326.t1.exon2Gvermi5326.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 1247245..1248704 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5326.t1.intron1Gvermi5326.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24228 1247152..1247244 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5326.t1.stop1Gvermi5326.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 1248702..1248704 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5326.t1 ID=Gvermi5326.t1|Name=Gvermi5326.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=504bp
MSAVHNDPRARAAPPAHPRPYAANPHMFIDVLRIPSIADAVDEAARLLRL
GIVRAMQANPAAPAAPAPVPAAAAAAAAKDARAAKPPAHAAAAQRDPVSV
YSAVTKRVSKAPEDAPKKEPPPPDPPRPSAALKGWNSAKKAGPSILSKRN
LANPTSVFQPAPKREKRSDAQHNESAHAHAHAHAHAHAHAHAHSSQPHPS
PKPAKGTQPHAHTKVPQPPTTSREHHAANVPTAQPQSAPPQGAPPQNHPA
ANKRVDQHQHASARHQSKTITQPSENGSAPTPAGGEKHAREPNSHSSASD
VWAKALSASNAENALKPKSTLMVGARKSGLPASWGQVSSSRAASKQPSVL
SMLRKPAGLAHAKLQLARNGTNPLLSVSQSGARTPPARLSANAVIPMPST
TGLEVQYVPGSEVIGGVRPNGYTVSRQGVVKPVITFNPKPKVPHKLRQTS
VEKLFEAWRDNQHLVEGEALAKALRTEQEMYASANTRVDYRAAVTVKLKE
IRK*
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spliced messenger RNA

>Gvermi5326.t1 ID=Gvermi5326.t1|Name=Gvermi5326.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at ScGOVlb_24228:1247100..1248704+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgagcgccgtgcacaacgacccgcgcgcgcgcgccgcgccgcccgcgca
cccgcgcccctacgccgcCAACCCGCACATGTTCATCGACGTGCTGCGCA
TCCCGTCCATCGCCGACGCCGTCGACGAGGCGGCGCGCCTGCTGCGCCTG
ggcatcgtgcgcgccatgcaggccaaccccgccgcccccgccgcccccgc
ccccgtccccgccgccgccgccgccgccgccgccaaggacgcgcgcgccg
ccaagccccccgcccacgccgccgccgcgCAGCGCGACCCCGTGTCCGTC
TACTCCGCCGTCACCAAGCGCGTCAGCAAGGCGCCCGAGGACGCGCCGAA
GAAGGAGccgccgccgcccgacccgccccgcccaagcgccgcGCTCAAGG
GCTGGAACAGCGCCAAGAAGGCGGGCCCCAGCATCCTCTCCAAGCGCAAC
CTCGCCAACCCCACCTCCGTCTTCCAGCCGGCCCCCAAGCGCGAGAAGAG
GTCCGACGCCCAGCACAATGAAAGcgcccacgcccacgcccacgcccacg
cccacgcccacgcccacgcccacgcccacAGCTCTCAGCCTCACCCGTCG
CCCAAGCCTGCCAAAGGGACACAGCCGCACGCCCACACCAAAGTGCCCCA
GCCGCCCACCACTTCTCGTGAGCACCACGCTGCCAACGTCCCCACCGCTC
AACCGCAGAGCGCCCCGCCGCAAGGCGCCCCACCACAAAACCACCCTGCC
GCCAACAAACGCGTCGACCAACACCAACACGCAAGCGCCCGTCATCAATC
CAAAACAATCACTCAGCCATCTGAAAATGGTTCAGCCCCTACTCCAGCCG
GCGGGGAAAAGCACGCGCGCGAGCCCAACTCGCACAGCTCTGCCAGTGAC
GTGTGGGCGAAAGCGCTGAGCGCGTCCAACGCGGAAAACGCCCTCAAGCC
AAAGTCAACGCTCATGGTCGGCGCGAGGAAGAGTGGGCTACCAGCGTCGT
GGGGGCAAGTCAGCAGTAGTCGTGCGGCTTCCAAGCAGCCTTCCGTGCTT
TCGATGCTCAGAAAACCGGCTGGCTTGGCGCACGCCAAGCTGCAGCTGGC
GCGCAATGGCACAAACCCCTTGCTGTCCGTGTCTCAGAGCGGCGCACGAA
CGCCACCTGCACGTCTGAGCGCAAACGCCGTCATACCCATGCCGAGCACA
ACGGGTTTAGAGGTGCAATACGTGCCTGGCAGCGAGGTAATCGGCGGAGT
TCGCCCGAATGGCTACACAGTGTCGCGGCAGGGCGTGGTTAAACCCGTCA
TTACTTTTAATCCAAAGCCCAAAGTGCCGCACAAGCTTCGGCAAACTTCT
GTCGAGAAGCTGTTTGAAGCATGGAGAGACAATCAACACCTTGTTGAAGG
AGAGGCGTTGGCAAAAGCGCTCAGAACAGAACAGGAAATGTACGCCTCCG
CGAATACGCGCGTGGACTACAGGGCAGCGGTCACTGTCAAACTAAAAGAA
ATACGCAAGTAG
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protein sequence of Gvermi5326.t1

>Gvermi5326.t1 ID=Gvermi5326.t1|Name=Gvermi5326.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=504bp
MSAVHNDPRARAAPPAHPRPYAANPHMFIDVLRIPSIADAVDEAARLLRL
GIVRAMQANPAAPAAPAPVPAAAAAAAAKDARAAKPPAHAAAAQRDPVSV
YSAVTKRVSKAPEDAPKKEPPPPDPPRPSAALKGWNSAKKAGPSILSKRN
LANPTSVFQPAPKREKRSDAQHNESAHAHAHAHAHAHAHAHAHSSQPHPS
PKPAKGTQPHAHTKVPQPPTTSREHHAANVPTAQPQSAPPQGAPPQNHPA
ANKRVDQHQHASARHQSKTITQPSENGSAPTPAGGEKHAREPNSHSSASD
VWAKALSASNAENALKPKSTLMVGARKSGLPASWGQVSSSRAASKQPSVL
SMLRKPAGLAHAKLQLARNGTNPLLSVSQSGARTPPARLSANAVIPMPST
TGLEVQYVPGSEVIGGVRPNGYTVSRQGVVKPVITFNPKPKVPHKLRQTS
VEKLFEAWRDNQHLVEGEALAKALRTEQEMYASANTRVDYRAAVTVKLKE
IRK*
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mRNA from alignment at ScGOVlb_24228:1247100..1248704+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5326.t1 ID=Gvermi5326.t1|Name=Gvermi5326.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1605bp|location=Sequence derived from alignment at ScGOVlb_24228:1247100..1248704+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgagcgccgtgcacaacgacccgcgcgcgcgcgccgcgccgcccgcgca
ccgtgagttgccgcgccccccgccgcgcgcccccgccgcgccgcgagctg
acgcgccgctgcccgtcgccgcgcgccccccgccgcgccgcgcagcgcgc
ccctacgccgcCAACCCGCACATGTTCATCGACGTGCTGCGCATCCCGTC
CATCGCCGACGCCGTCGACGAGGCGGCGCGCCTGCTGCGCCTGggcatcg
tgcgcgccatgcaggccaaccccgccgcccccgccgcccccgcccccgtc
cccgccgccgccgccgccgccgccgccaaggacgcgcgcgccgccaagcc
ccccgcccacgccgccgccgcgCAGCGCGACCCCGTGTCCGTCTACTCCG
CCGTCACCAAGCGCGTCAGCAAGGCGCCCGAGGACGCGCCGAAGAAGGAG
ccgccgccgcccgacccgccccgcccaagcgccgcGCTCAAGGGCTGGAA
CAGCGCCAAGAAGGCGGGCCCCAGCATCCTCTCCAAGCGCAACCTCGCCA
ACCCCACCTCCGTCTTCCAGCCGGCCCCCAAGCGCGAGAAGAGGTCCGAC
GCCCAGCACAATGAAAGcgcccacgcccacgcccacgcccacgcccacgc
ccacgcccacgcccacgcccacAGCTCTCAGCCTCACCCGTCGCCCAAGC
CTGCCAAAGGGACACAGCCGCACGCCCACACCAAAGTGCCCCAGCCGCCC
ACCACTTCTCGTGAGCACCACGCTGCCAACGTCCCCACCGCTCAACCGCA
GAGCGCCCCGCCGCAAGGCGCCCCACCACAAAACCACCCTGCCGCCAACA
AACGCGTCGACCAACACCAACACGCAAGCGCCCGTCATCAATCCAAAACA
ATCACTCAGCCATCTGAAAATGGTTCAGCCCCTACTCCAGCCGGCGGGGA
AAAGCACGCGCGCGAGCCCAACTCGCACAGCTCTGCCAGTGACGTGTGGG
CGAAAGCGCTGAGCGCGTCCAACGCGGAAAACGCCCTCAAGCCAAAGTCA
ACGCTCATGGTCGGCGCGAGGAAGAGTGGGCTACCAGCGTCGTGGGGGCA
AGTCAGCAGTAGTCGTGCGGCTTCCAAGCAGCCTTCCGTGCTTTCGATGC
TCAGAAAACCGGCTGGCTTGGCGCACGCCAAGCTGCAGCTGGCGCGCAAT
GGCACAAACCCCTTGCTGTCCGTGTCTCAGAGCGGCGCACGAACGCCACC
TGCACGTCTGAGCGCAAACGCCGTCATACCCATGCCGAGCACAACGGGTT
TAGAGGTGCAATACGTGCCTGGCAGCGAGGTAATCGGCGGAGTTCGCCCG
AATGGCTACACAGTGTCGCGGCAGGGCGTGGTTAAACCCGTCATTACTTT
TAATCCAAAGCCCAAAGTGCCGCACAAGCTTCGGCAAACTTCTGTCGAGA
AGCTGTTTGAAGCATGGAGAGACAATCAACACCTTGTTGAAGGAGAGGCG
TTGGCAAAAGCGCTCAGAACAGAACAGGAAATGTACGCCTCCGCGAATAC
GCGCGTGGACTACAGGGCAGCGGTCACTGTCAAACTAAAAGAAATACGCA
AGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24228:1247100..1248704+

>Gvermi5326.t1 ID=Gvermi5326.t1|Name=Gvermi5326.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1512bp|location=Sequence derived from alignment at ScGOVlb_24228:1247100..1248704+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgagcgccgtgcacaacgacccgcgcgcgcgcgccgcgccgcccgcgca
cccgcgcccctacgccgcCAACCCGCACATGTTCATCGACGTGCTGCGCA
TCCCGTCCATCGCCGACGCCGTCGACGAGGCGGCGCGCCTGCTGCGCCTG
ggcatcgtgcgcgccatgcaggccaaccccgccgcccccgccgcccccgc
ccccgtccccgccgccgccgccgccgccgccgccaaggacgcgcgcgccg
ccaagccccccgcccacgccgccgccgcgCAGCGCGACCCCGTGTCCGTC
TACTCCGCCGTCACCAAGCGCGTCAGCAAGGCGCCCGAGGACGCGCCGAA
GAAGGAGccgccgccgcccgacccgccccgcccaagcgccgcGCTCAAGG
GCTGGAACAGCGCCAAGAAGGCGGGCCCCAGCATCCTCTCCAAGCGCAAC
CTCGCCAACCCCACCTCCGTCTTCCAGCCGGCCCCCAAGCGCGAGAAGAG
GTCCGACGCCCAGCACAATGAAAGcgcccacgcccacgcccacgcccacg
cccacgcccacgcccacgcccacgcccacAGCTCTCAGCCTCACCCGTCG
CCCAAGCCTGCCAAAGGGACACAGCCGCACGCCCACACCAAAGTGCCCCA
GCCGCCCACCACTTCTCGTGAGCACCACGCTGCCAACGTCCCCACCGCTC
AACCGCAGAGCGCCCCGCCGCAAGGCGCCCCACCACAAAACCACCCTGCC
GCCAACAAACGCGTCGACCAACACCAACACGCAAGCGCCCGTCATCAATC
CAAAACAATCACTCAGCCATCTGAAAATGGTTCAGCCCCTACTCCAGCCG
GCGGGGAAAAGCACGCGCGCGAGCCCAACTCGCACAGCTCTGCCAGTGAC
GTGTGGGCGAAAGCGCTGAGCGCGTCCAACGCGGAAAACGCCCTCAAGCC
AAAGTCAACGCTCATGGTCGGCGCGAGGAAGAGTGGGCTACCAGCGTCGT
GGGGGCAAGTCAGCAGTAGTCGTGCGGCTTCCAAGCAGCCTTCCGTGCTT
TCGATGCTCAGAAAACCGGCTGGCTTGGCGCACGCCAAGCTGCAGCTGGC
GCGCAATGGCACAAACCCCTTGCTGTCCGTGTCTCAGAGCGGCGCACGAA
CGCCACCTGCACGTCTGAGCGCAAACGCCGTCATACCCATGCCGAGCACA
ACGGGTTTAGAGGTGCAATACGTGCCTGGCAGCGAGGTAATCGGCGGAGT
TCGCCCGAATGGCTACACAGTGTCGCGGCAGGGCGTGGTTAAACCCGTCA
TTACTTTTAATCCAAAGCCCAAAGTGCCGCACAAGCTTCGGCAAACTTCT
GTCGAGAAGCTGTTTGAAGCATGGAGAGACAATCAACACCTTGTTGAAGG
AGAGGCGTTGGCAAAAGCGCTCAGAACAGAACAGGAAATGTACGCCTCCG
CGAATACGCGCGTGGACTACAGGGCAGCGGTCACTGTCAAACTAAAAGAA
ATACGCAAGTAG
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