Gvermi5299.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5299.t1
Unique NameGvermi5299.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length437
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:1135036..1136346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog115417.EPrPW00000018356
Max annot lvl121069|Pythiales
Evalue2.06e-38
EggNOG OGs28PF8@1|root,2QW36@2759|Eukaryota,1MBRZ@121069|Pythiales
DescriptionTransporter permease protein. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5299Gvermi5299Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 1135036..1136346 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5299.t1.start1Gvermi5299.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 1135036..1135038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5299.t1.CDS1Gvermi5299.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 1135036..1136346 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5299.t1.exon1Gvermi5299.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 1135036..1136346 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5299.t1.stop1Gvermi5299.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 1136344..1136346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5299.t1Gvermi5299.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 1135036..1136346 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5299.t1 ID=Gvermi5299.t1|Name=Gvermi5299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=437bp
MAGGALRIFFSATIFVLTGVIMTISLQGVLYSGGGDRSTFLLAIPNYLGI
TAVYFLGARCFRLLDSLGVWCGGGNDANRVHLSLYDKKLQPKLGFFETLF
HPDRRKLFVLAFNETGGFLTGLTGLSIAGSGLYQVVFSGGTVFTALLTTF
FLRKRLSISQWLCVGVITAGLMITAEQVTHSATEAGAASLISGLSFVLVS
CLFYSTNYVIAEHVLDGLGNDQDQESDSLPPPSGLDLSLYTGGSCLIIFG
AYVMAHTVPNWKQLVVRSIEQHHGNKTIIVEEYIYLTVASFFHAITHYDV
VATVGAVPIGVLNAIRAVSVFGVSSLFFCSNQASQCYNSRKGISTAVVIL
GAIGYSAASAVSNAAKGYTKLSQVDAVATRTARKLRRAMSQSVDLSKSLS
LSLLQGLETPADRSFTLGNITGSSRKRKDSIQATDG*
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spliced messenger RNA

>Gvermi5299.t1 ID=Gvermi5299.t1|Name=Gvermi5299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at ScGOVlb_24228:1135036..1136346+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGCGGTGCCCTGCGCATCTTCTTTTCGGCCACCATCTTTGTGCT
AACTGGAGTGATAATGACCATATCCCTACAGGGTGTGCTTTACTCTGGGG
GCGGTGATCGATCCACATTTCTACTGGCCATTCCGAATTACTTGGGAATC
ACGGCTGTTTACTTCCTTGGCGCGCGCTGCTTCCGTCTTCTCGACTCTCT
CGGTGTGTGGTGCGGTGGCGGGAATGACGCAAACCGTGTGCATCTTTCGC
TCTACGACAAGAAGCTTCAGCCCAAATTGGGTTTCTTCGAGACGCTTTTT
CATCCTGATCGTCGAAAGTTATTCGTTCTAGCTTTTAACGAAACCGGGGG
CTTTCTCACAGGACTGACCGGTTTGTCCATCGCTGGCTCTGGTCTTTACC
AGGTTGTCTTCTCTGGCGGTACAGTCTTTACTGCGCTGCTCACTACATTC
TTTCTCAGGAAACGTCTCTCAATTTCACAGTGGCTATGTGTTGGTGTAAT
TACAGCTGGGCTCATGATCACCGCGGAGCAAGTGACACATTCTGCTACCG
AGGCGGGTGCCGCAAGTCTCATCAGTGGGCTCTCTTTCGTATTGGTTTCG
TGTCTTTTCTACTCTACGAACTATGTAATTGCCGAACACGTTCTCGATGG
GCTTGGAAACGATCAGGACCAAGAATCTGACAGTCTTCCGCCTCCTTCCG
GACTCGACTTGTCTCTTTATACCGGTGGTTCCTGTCTAATAATCTTTGGG
GCGTACGTCATGGCGCATACTGTTCCCAACTGGAAGCAACTCGTTGTACG
CTCTATTGAACAGCACCATGGGAACAAGACTATCATCGTTGAAGAGTACA
TCTATTTGACTGTTGCGTCTTTCTTTCACGCAATAACACATTATGATGTT
GTTGCTACGGTGGGTGCAGTTCCAATCGGTGTGCTCAATGCAATTCGAGC
GGTGAGCGTGTTTGGCGTCAGCTCCTTGTTTTTTTGCTCCAATCAGGCAT
CACAATGCTACAATTCGCGGAAAGGTATATCGACTGCGGTCGTTATTCTG
GGGGCAATTGGGTATTCGGCGGCATCTGCTGTCAGTAATGCAGCCAAGGG
ATATACCAAGCTATCACAGGTTGACGCCGTTGCAACGCGGACAGCGAGGA
AGCTGCGAAGAGCGATGAGTCAATCCGTTGATCTATCGAAAAGCTTATCG
CTATCTCTACTGCAAGGTCTTGAAACACCCGCAGACAGGAGTTTTACGCT
TGGCAACATAACAGGTTCTTCCAGAAAGCGAAAAGATTCCATACAAGCCA
CGGACGGGTGA
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protein sequence of Gvermi5299.t1

>Gvermi5299.t1 ID=Gvermi5299.t1|Name=Gvermi5299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=437bp
MAGGALRIFFSATIFVLTGVIMTISLQGVLYSGGGDRSTFLLAIPNYLGI
TAVYFLGARCFRLLDSLGVWCGGGNDANRVHLSLYDKKLQPKLGFFETLF
HPDRRKLFVLAFNETGGFLTGLTGLSIAGSGLYQVVFSGGTVFTALLTTF
FLRKRLSISQWLCVGVITAGLMITAEQVTHSATEAGAASLISGLSFVLVS
CLFYSTNYVIAEHVLDGLGNDQDQESDSLPPPSGLDLSLYTGGSCLIIFG
AYVMAHTVPNWKQLVVRSIEQHHGNKTIIVEEYIYLTVASFFHAITHYDV
VATVGAVPIGVLNAIRAVSVFGVSSLFFCSNQASQCYNSRKGISTAVVIL
GAIGYSAASAVSNAAKGYTKLSQVDAVATRTARKLRRAMSQSVDLSKSLS
LSLLQGLETPADRSFTLGNITGSSRKRKDSIQATDG*
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mRNA from alignment at ScGOVlb_24228:1135036..1136346+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5299.t1 ID=Gvermi5299.t1|Name=Gvermi5299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at ScGOVlb_24228:1135036..1136346+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGGCGGTGCCCTGCGCATCTTCTTTTCGGCCACCATCTTTGTGCT
AACTGGAGTGATAATGACCATATCCCTACAGGGTGTGCTTTACTCTGGGG
GCGGTGATCGATCCACATTTCTACTGGCCATTCCGAATTACTTGGGAATC
ACGGCTGTTTACTTCCTTGGCGCGCGCTGCTTCCGTCTTCTCGACTCTCT
CGGTGTGTGGTGCGGTGGCGGGAATGACGCAAACCGTGTGCATCTTTCGC
TCTACGACAAGAAGCTTCAGCCCAAATTGGGTTTCTTCGAGACGCTTTTT
CATCCTGATCGTCGAAAGTTATTCGTTCTAGCTTTTAACGAAACCGGGGG
CTTTCTCACAGGACTGACCGGTTTGTCCATCGCTGGCTCTGGTCTTTACC
AGGTTGTCTTCTCTGGCGGTACAGTCTTTACTGCGCTGCTCACTACATTC
TTTCTCAGGAAACGTCTCTCAATTTCACAGTGGCTATGTGTTGGTGTAAT
TACAGCTGGGCTCATGATCACCGCGGAGCAAGTGACACATTCTGCTACCG
AGGCGGGTGCCGCAAGTCTCATCAGTGGGCTCTCTTTCGTATTGGTTTCG
TGTCTTTTCTACTCTACGAACTATGTAATTGCCGAACACGTTCTCGATGG
GCTTGGAAACGATCAGGACCAAGAATCTGACAGTCTTCCGCCTCCTTCCG
GACTCGACTTGTCTCTTTATACCGGTGGTTCCTGTCTAATAATCTTTGGG
GCGTACGTCATGGCGCATACTGTTCCCAACTGGAAGCAACTCGTTGTACG
CTCTATTGAACAGCACCATGGGAACAAGACTATCATCGTTGAAGAGTACA
TCTATTTGACTGTTGCGTCTTTCTTTCACGCAATAACACATTATGATGTT
GTTGCTACGGTGGGTGCAGTTCCAATCGGTGTGCTCAATGCAATTCGAGC
GGTGAGCGTGTTTGGCGTCAGCTCCTTGTTTTTTTGCTCCAATCAGGCAT
CACAATGCTACAATTCGCGGAAAGGTATATCGACTGCGGTCGTTATTCTG
GGGGCAATTGGGTATTCGGCGGCATCTGCTGTCAGTAATGCAGCCAAGGG
ATATACCAAGCTATCACAGGTTGACGCCGTTGCAACGCGGACAGCGAGGA
AGCTGCGAAGAGCGATGAGTCAATCCGTTGATCTATCGAAAAGCTTATCG
CTATCTCTACTGCAAGGTCTTGAAACACCCGCAGACAGGAGTTTTACGCT
TGGCAACATAACAGGTTCTTCCAGAAAGCGAAAAGATTCCATACAAGCCA
CGGACGGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24228:1135036..1136346+

>Gvermi5299.t1 ID=Gvermi5299.t1|Name=Gvermi5299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1311bp|location=Sequence derived from alignment at ScGOVlb_24228:1135036..1136346+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGGCGGTGCCCTGCGCATCTTCTTTTCGGCCACCATCTTTGTGCT
AACTGGAGTGATAATGACCATATCCCTACAGGGTGTGCTTTACTCTGGGG
GCGGTGATCGATCCACATTTCTACTGGCCATTCCGAATTACTTGGGAATC
ACGGCTGTTTACTTCCTTGGCGCGCGCTGCTTCCGTCTTCTCGACTCTCT
CGGTGTGTGGTGCGGTGGCGGGAATGACGCAAACCGTGTGCATCTTTCGC
TCTACGACAAGAAGCTTCAGCCCAAATTGGGTTTCTTCGAGACGCTTTTT
CATCCTGATCGTCGAAAGTTATTCGTTCTAGCTTTTAACGAAACCGGGGG
CTTTCTCACAGGACTGACCGGTTTGTCCATCGCTGGCTCTGGTCTTTACC
AGGTTGTCTTCTCTGGCGGTACAGTCTTTACTGCGCTGCTCACTACATTC
TTTCTCAGGAAACGTCTCTCAATTTCACAGTGGCTATGTGTTGGTGTAAT
TACAGCTGGGCTCATGATCACCGCGGAGCAAGTGACACATTCTGCTACCG
AGGCGGGTGCCGCAAGTCTCATCAGTGGGCTCTCTTTCGTATTGGTTTCG
TGTCTTTTCTACTCTACGAACTATGTAATTGCCGAACACGTTCTCGATGG
GCTTGGAAACGATCAGGACCAAGAATCTGACAGTCTTCCGCCTCCTTCCG
GACTCGACTTGTCTCTTTATACCGGTGGTTCCTGTCTAATAATCTTTGGG
GCGTACGTCATGGCGCATACTGTTCCCAACTGGAAGCAACTCGTTGTACG
CTCTATTGAACAGCACCATGGGAACAAGACTATCATCGTTGAAGAGTACA
TCTATTTGACTGTTGCGTCTTTCTTTCACGCAATAACACATTATGATGTT
GTTGCTACGGTGGGTGCAGTTCCAATCGGTGTGCTCAATGCAATTCGAGC
GGTGAGCGTGTTTGGCGTCAGCTCCTTGTTTTTTTGCTCCAATCAGGCAT
CACAATGCTACAATTCGCGGAAAGGTATATCGACTGCGGTCGTTATTCTG
GGGGCAATTGGGTATTCGGCGGCATCTGCTGTCAGTAATGCAGCCAAGGG
ATATACCAAGCTATCACAGGTTGACGCCGTTGCAACGCGGACAGCGAGGA
AGCTGCGAAGAGCGATGAGTCAATCCGTTGATCTATCGAAAAGCTTATCG
CTATCTCTACTGCAAGGTCTTGAAACACCCGCAGACAGGAGTTTTACGCT
TGGCAACATAACAGGTTCTTCCAGAAAGCGAAAAGATTCCATACAAGCCA
CGGACGGGTGA
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