Gvermi5299.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi5299.t1
Unique Name	Gvermi5299.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	437

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24228	contig	ScGOVlb_24228:1135036..1136346 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	115417.EPrPW00000018356
Max annot lvl	121069\|Pythiales
Evalue	2.06e-38
EggNOG OGs	28PF8@1\|root,2QW36@2759\|Eukaryota,1MBRZ@121069\|Pythiales
Description	Transporter permease protein. Source PGD
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5299	Gvermi5299	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24228 1135036..1136346 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5299.t1.start1	Gvermi5299.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24228 1135036..1135038 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5299.t1.CDS1	Gvermi5299.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24228 1135036..1136346 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5299.t1.exon1	Gvermi5299.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24228 1135036..1136346 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5299.t1.stop1	Gvermi5299.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24228 1136344..1136346 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5299.t1	Gvermi5299.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24228 1135036..1136346 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24228:1135036..1136346+
coding sequence from alignment at ScGOVlb_24228:1135036..1136346+

mRNA sequence

>Gvermi5299.t1 ID=Gvermi5299.t1|Name=Gvermi5299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=437bp
MAGGALRIFFSATIFVLTGVIMTISLQGVLYSGGGDRSTFLLAIPNYLGI
TAVYFLGARCFRLLDSLGVWCGGGNDANRVHLSLYDKKLQPKLGFFETLF
HPDRRKLFVLAFNETGGFLTGLTGLSIAGSGLYQVVFSGGTVFTALLTTF
FLRKRLSISQWLCVGVITAGLMITAEQVTHSATEAGAASLISGLSFVLVS
CLFYSTNYVIAEHVLDGLGNDQDQESDSLPPPSGLDLSLYTGGSCLIIFG
AYVMAHTVPNWKQLVVRSIEQHHGNKTIIVEEYIYLTVASFFHAITHYDV
VATVGAVPIGVLNAIRAVSVFGVSSLFFCSNQASQCYNSRKGISTAVVIL
GAIGYSAASAVSNAAKGYTKLSQVDAVATRTARKLRRAMSQSVDLSKSLS
LSLLQGLETPADRSFTLGNITGSSRKRKDSIQATDG*

spliced messenger RNA

>Gvermi5299.t1 ID=Gvermi5299.t1|Name=Gvermi5299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at ScGOVlb_24228:1135036..1136346+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGCGGTGCCCTGCGCATCTTCTTTTCGGCCACCATCTTTGTGCT
AACTGGAGTGATAATGACCATATCCCTACAGGGTGTGCTTTACTCTGGGG
GCGGTGATCGATCCACATTTCTACTGGCCATTCCGAATTACTTGGGAATC
ACGGCTGTTTACTTCCTTGGCGCGCGCTGCTTCCGTCTTCTCGACTCTCT
CGGTGTGTGGTGCGGTGGCGGGAATGACGCAAACCGTGTGCATCTTTCGC
TCTACGACAAGAAGCTTCAGCCCAAATTGGGTTTCTTCGAGACGCTTTTT
CATCCTGATCGTCGAAAGTTATTCGTTCTAGCTTTTAACGAAACCGGGGG
CTTTCTCACAGGACTGACCGGTTTGTCCATCGCTGGCTCTGGTCTTTACC
AGGTTGTCTTCTCTGGCGGTACAGTCTTTACTGCGCTGCTCACTACATTC
TTTCTCAGGAAACGTCTCTCAATTTCACAGTGGCTATGTGTTGGTGTAAT
TACAGCTGGGCTCATGATCACCGCGGAGCAAGTGACACATTCTGCTACCG
AGGCGGGTGCCGCAAGTCTCATCAGTGGGCTCTCTTTCGTATTGGTTTCG
TGTCTTTTCTACTCTACGAACTATGTAATTGCCGAACACGTTCTCGATGG
GCTTGGAAACGATCAGGACCAAGAATCTGACAGTCTTCCGCCTCCTTCCG
GACTCGACTTGTCTCTTTATACCGGTGGTTCCTGTCTAATAATCTTTGGG
GCGTACGTCATGGCGCATACTGTTCCCAACTGGAAGCAACTCGTTGTACG
CTCTATTGAACAGCACCATGGGAACAAGACTATCATCGTTGAAGAGTACA
TCTATTTGACTGTTGCGTCTTTCTTTCACGCAATAACACATTATGATGTT
GTTGCTACGGTGGGTGCAGTTCCAATCGGTGTGCTCAATGCAATTCGAGC
GGTGAGCGTGTTTGGCGTCAGCTCCTTGTTTTTTTGCTCCAATCAGGCAT
CACAATGCTACAATTCGCGGAAAGGTATATCGACTGCGGTCGTTATTCTG
GGGGCAATTGGGTATTCGGCGGCATCTGCTGTCAGTAATGCAGCCAAGGG
ATATACCAAGCTATCACAGGTTGACGCCGTTGCAACGCGGACAGCGAGGA
AGCTGCGAAGAGCGATGAGTCAATCCGTTGATCTATCGAAAAGCTTATCG
CTATCTCTACTGCAAGGTCTTGAAACACCCGCAGACAGGAGTTTTACGCT
TGGCAACATAACAGGTTCTTCCAGAAAGCGAAAAGATTCCATACAAGCCA
CGGACGGGTGA

protein sequence of Gvermi5299.t1

>Gvermi5299.t1 ID=Gvermi5299.t1|Name=Gvermi5299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=437bp
MAGGALRIFFSATIFVLTGVIMTISLQGVLYSGGGDRSTFLLAIPNYLGI
TAVYFLGARCFRLLDSLGVWCGGGNDANRVHLSLYDKKLQPKLGFFETLF
HPDRRKLFVLAFNETGGFLTGLTGLSIAGSGLYQVVFSGGTVFTALLTTF
FLRKRLSISQWLCVGVITAGLMITAEQVTHSATEAGAASLISGLSFVLVS
CLFYSTNYVIAEHVLDGLGNDQDQESDSLPPPSGLDLSLYTGGSCLIIFG
AYVMAHTVPNWKQLVVRSIEQHHGNKTIIVEEYIYLTVASFFHAITHYDV
VATVGAVPIGVLNAIRAVSVFGVSSLFFCSNQASQCYNSRKGISTAVVIL
GAIGYSAASAVSNAAKGYTKLSQVDAVATRTARKLRRAMSQSVDLSKSLS
LSLLQGLETPADRSFTLGNITGSSRKRKDSIQATDG*

mRNA from alignment at ScGOVlb_24228:1135036..1136346+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi5299.t1 ID=Gvermi5299.t1|Name=Gvermi5299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at ScGOVlb_24228:1135036..1136346+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGGCGGTGCCCTGCGCATCTTCTTTTCGGCCACCATCTTTGTGCT
AACTGGAGTGATAATGACCATATCCCTACAGGGTGTGCTTTACTCTGGGG
GCGGTGATCGATCCACATTTCTACTGGCCATTCCGAATTACTTGGGAATC
ACGGCTGTTTACTTCCTTGGCGCGCGCTGCTTCCGTCTTCTCGACTCTCT
CGGTGTGTGGTGCGGTGGCGGGAATGACGCAAACCGTGTGCATCTTTCGC
TCTACGACAAGAAGCTTCAGCCCAAATTGGGTTTCTTCGAGACGCTTTTT
CATCCTGATCGTCGAAAGTTATTCGTTCTAGCTTTTAACGAAACCGGGGG
CTTTCTCACAGGACTGACCGGTTTGTCCATCGCTGGCTCTGGTCTTTACC
AGGTTGTCTTCTCTGGCGGTACAGTCTTTACTGCGCTGCTCACTACATTC
TTTCTCAGGAAACGTCTCTCAATTTCACAGTGGCTATGTGTTGGTGTAAT
TACAGCTGGGCTCATGATCACCGCGGAGCAAGTGACACATTCTGCTACCG
AGGCGGGTGCCGCAAGTCTCATCAGTGGGCTCTCTTTCGTATTGGTTTCG
TGTCTTTTCTACTCTACGAACTATGTAATTGCCGAACACGTTCTCGATGG
GCTTGGAAACGATCAGGACCAAGAATCTGACAGTCTTCCGCCTCCTTCCG
GACTCGACTTGTCTCTTTATACCGGTGGTTCCTGTCTAATAATCTTTGGG
GCGTACGTCATGGCGCATACTGTTCCCAACTGGAAGCAACTCGTTGTACG
CTCTATTGAACAGCACCATGGGAACAAGACTATCATCGTTGAAGAGTACA
TCTATTTGACTGTTGCGTCTTTCTTTCACGCAATAACACATTATGATGTT
GTTGCTACGGTGGGTGCAGTTCCAATCGGTGTGCTCAATGCAATTCGAGC
GGTGAGCGTGTTTGGCGTCAGCTCCTTGTTTTTTTGCTCCAATCAGGCAT
CACAATGCTACAATTCGCGGAAAGGTATATCGACTGCGGTCGTTATTCTG
GGGGCAATTGGGTATTCGGCGGCATCTGCTGTCAGTAATGCAGCCAAGGG
ATATACCAAGCTATCACAGGTTGACGCCGTTGCAACGCGGACAGCGAGGA
AGCTGCGAAGAGCGATGAGTCAATCCGTTGATCTATCGAAAAGCTTATCG
CTATCTCTACTGCAAGGTCTTGAAACACCCGCAGACAGGAGTTTTACGCT
TGGCAACATAACAGGTTCTTCCAGAAAGCGAAAAGATTCCATACAAGCCA
CGGACGGGTGA

Coding sequence (CDS) from alignment at ScGOVlb_24228:1135036..1136346+

>Gvermi5299.t1 ID=Gvermi5299.t1|Name=Gvermi5299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1311bp|location=Sequence derived from alignment at ScGOVlb_24228:1135036..1136346+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGGCGGTGCCCTGCGCATCTTCTTTTCGGCCACCATCTTTGTGCT
AACTGGAGTGATAATGACCATATCCCTACAGGGTGTGCTTTACTCTGGGG
GCGGTGATCGATCCACATTTCTACTGGCCATTCCGAATTACTTGGGAATC
ACGGCTGTTTACTTCCTTGGCGCGCGCTGCTTCCGTCTTCTCGACTCTCT
CGGTGTGTGGTGCGGTGGCGGGAATGACGCAAACCGTGTGCATCTTTCGC
TCTACGACAAGAAGCTTCAGCCCAAATTGGGTTTCTTCGAGACGCTTTTT
CATCCTGATCGTCGAAAGTTATTCGTTCTAGCTTTTAACGAAACCGGGGG
CTTTCTCACAGGACTGACCGGTTTGTCCATCGCTGGCTCTGGTCTTTACC
AGGTTGTCTTCTCTGGCGGTACAGTCTTTACTGCGCTGCTCACTACATTC
TTTCTCAGGAAACGTCTCTCAATTTCACAGTGGCTATGTGTTGGTGTAAT
TACAGCTGGGCTCATGATCACCGCGGAGCAAGTGACACATTCTGCTACCG
AGGCGGGTGCCGCAAGTCTCATCAGTGGGCTCTCTTTCGTATTGGTTTCG
TGTCTTTTCTACTCTACGAACTATGTAATTGCCGAACACGTTCTCGATGG
GCTTGGAAACGATCAGGACCAAGAATCTGACAGTCTTCCGCCTCCTTCCG
GACTCGACTTGTCTCTTTATACCGGTGGTTCCTGTCTAATAATCTTTGGG
GCGTACGTCATGGCGCATACTGTTCCCAACTGGAAGCAACTCGTTGTACG
CTCTATTGAACAGCACCATGGGAACAAGACTATCATCGTTGAAGAGTACA
TCTATTTGACTGTTGCGTCTTTCTTTCACGCAATAACACATTATGATGTT
GTTGCTACGGTGGGTGCAGTTCCAATCGGTGTGCTCAATGCAATTCGAGC
GGTGAGCGTGTTTGGCGTCAGCTCCTTGTTTTTTTGCTCCAATCAGGCAT
CACAATGCTACAATTCGCGGAAAGGTATATCGACTGCGGTCGTTATTCTG
GGGGCAATTGGGTATTCGGCGGCATCTGCTGTCAGTAATGCAGCCAAGGG
ATATACCAAGCTATCACAGGTTGACGCCGTTGCAACGCGGACAGCGAGGA
AGCTGCGAAGAGCGATGAGTCAATCCGTTGATCTATCGAAAAGCTTATCG
CTATCTCTACTGCAAGGTCTTGAAACACCCGCAGACAGGAGTTTTACGCT
TGGCAACATAACAGGTTCTTCCAGAAAGCGAAAAGATTCCATACAAGCCA
CGGACGGGTGA