Gvermi5298.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi5298.t1
Unique Name	Gvermi5298.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	617

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24228	contig	ScGOVlb_24228:1131997..1133847 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMI136CT
PFAMs	DnaJ,ShK,TPR_16,TPR_8
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04646,ko:K20478
KEGG Pathway	ko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
Evalue	1.97e-30
EggNOG OGs	COG0484@1\|root,KOG0550@2759\|Eukaryota
Description	chaperone cofactor-dependent protein refolding
COG category	O
BRITE	ko00000,ko00001,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5298	Gvermi5298	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24228 1131997..1133847 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5298.t1.start1	Gvermi5298.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24228 1131997..1131999 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5298.t1.CDS1	Gvermi5298.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24228 1131997..1133847 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5298.t1.exon1	Gvermi5298.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24228 1131997..1133847 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5298.t1.stop1	Gvermi5298.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24228 1133845..1133847 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5298.t1	Gvermi5298.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24228 1131997..1133847 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24228:1131997..1133847+
coding sequence from alignment at ScGOVlb_24228:1131997..1133847+

mRNA sequence

>Gvermi5298.t1 ID=Gvermi5298.t1|Name=Gvermi5298.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=617bp
MSAAFVALNPLPSLASRSVLPRHAAAPTLRPALHPRMSFSSEPIQQLWRY
LFSQIQSGPVSTPFEAANNFVEEQLPYHHASILSIQPITAAHDLVQVTVD
VAEARLNESYTTPGQFVRLASPDTKRSVLLAIASPPDATSTHFNFILSPK
THRQLLKRLKQGGTVSISDIMGEGLFVNLPRGCNLHVLADSAQGFAAVSS
LLEWGPFRASTGEGCNRTSQINIYTSIPTRNSMPYARKLSRWTAFGVSVF
PVVSSGLVQFVTSAVLGSQHSLANDQALVCVAEDDTFNALQSALLLCGFR
RSLIHKWTVREMSRFVHQPRYSNKNDLEPEDGYNDFMRTGFERRVWQSWV
GVREDMRRDFENKWSAQRRMNRDEAASEREKANAWASWSAKNRDQWQQVQ
WDNVSWKHYWKSWDQQRSRWKGESEWPHANQKAWTQSKSQEYWDWVGTGT
GRGKTAGGGSSSYYEKHSEGKWSGSTGWNGNSKGGYQRGYRYEHRDTGQN
AHNRSHDWGSNPGNSWGGWSYDESRRKSYSSSNRGYGSARQGADFDFYNI
LGIKSGASRAEIKKAYRQKAMEHHPDRNPNNVEEANVKMKQIVVAWTILR
DDQKRQRYDRYGSSGL*

spliced messenger RNA

>Gvermi5298.t1 ID=Gvermi5298.t1|Name=Gvermi5298.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1851bp|location=Sequence derived from alignment at ScGOVlb_24228:1131997..1133847+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCAGCCTTCGTTGCGCTCAATCCCTTGCCTTCGTTGGCCTCGCG
CTCCGTTCTTCCGCGCCATGCTGCCGCCCCCACCTTGCGCCCTGCTTTAC
ACCCTCGCATGAGCTTTTCCTCCGAGCCCATACAACAATTATGGCGCTAT
TTGTTTTCCCAAATACAGTCCGGACCCGTTTCTACTCCGTTTGAAGCTGC
CAATAACTTTGTCGAGGAACAGCTACCCTATCATCACGCCTCAATTCTTT
CCATTCAACCGATTACCGCCGCCCACGACCTCGTGCAGGTAACCGTCGAC
GTTGCCGAAGCGCGTCTCAATGAATCTTACACGACTCCGGGCCAGTTTGT
ACGTCTTGCTTCACCAGATACCAAGCGTTCAGTATTACTTGCCATTGCCT
CGCCACCGGACGCTACTTCCACACACTTCAACTTCATTCTTTCTCCAAAG
ACCCACCGACAGCTGCTGAAACGCCTCAAACAGGGTGGAACCGTTTCCAT
TTCCGACATTATGGGTGAAGGGCTCTTTGTCAATCTACCTCGCGGTTGCA
ACCTCCACGTACTTGCCGACTCGGCGCAGGGCTTTGCCGCCGTTTCTTCC
TTGCTTGAGTGGGGTCCTTTTCGTGCCTCAACTGGCGAAGGTTGCAATCG
CACCAGCCAAATTAATATATACACCTCAATTCCGACACGGAATAGCATGC
CCTATGCACGCAAGCTTTCCAGATGGACTGCTTTTGGTGTGTCCGTTTTC
CCTGTTGTATCCTCTGGCCTTGTACAATTCGTTACTTCTGCTGTGTTGGG
CTCACAGCATTCTCTCGCAAACGACCAAGCATTGGTGTGCGTCGCTGAGG
ATGACACATTTAATGCCCTCCAGAGTGCTCTCTTGTTGTGCGGCTTTCGC
AGATCTCTTATTCACAAGTGGACTGTGCGAGAAATGTCGCGCTTTGTTCA
TCAGCCGCGGTATTCGAACAAAAATGATCTGGAGCCAGAGGATGGGTACA
ATGACTTCATGCGCACCGGGTTTGAACGTCGGGTCTGGCAGAGTTGGGTC
GGCGTACGAGAAGACATGCGTCGTGATTTTGAGAACAAATGGTCTGCTCA
GCGCAGAATGAACAGGGATGAGGCTGCGAGCGAACGGGAAAAGGCCAATG
CCTGGGCTTCATGGTCGGCCAAAAATCGTGATCAGTGGCAGCAAGTGCAA
TGGGATAACGTGTCCTGGAAGCATTACTGGAAGTCGTGGGATCAACAAAG
AAGTCGGTGGAAAGGTGAGAGTGAATGGCCCCATGCGAATCAGAAGGCTT
GGACCCAGTCAAAATCGCAGGAATACTGGGATTGGGTTGGCACTGGTACA
GGCAGGGGAAAAACAGCGGGTGGTGGTTCATCTTCTTATTACGAGAAACA
CTCCGAAGGCAAGTGGAGCGGATCCACTGGGTGGAATGGAAACAGTAAAG
GAGGATACCAGCGAGGTTATCGGTATGAACATCGCGACACTGGGCAGAAC
GCGCATAACAGATCGCATGACTGGGGCTCCAATCCAGGAAACAGTTGGGG
TGGATGGAGTTATGACGAATCACGGCGCAAGTCGTACTCTTCAAGCAATC
GTGGCTACGGCTCTGCGAGACAGGGAGCCGATTTCGACTTCTACAACATC
CTTGGCATCAAATCAGGCGCTTCTAGAGCTGAGATTAAGAAGGCATACAG
GCAGAAGGCGATGGAACATCATCCTGATCGAAATCCCAACAATGTGGAAG
AAGCGAATGTGAAAATGAAGCAAATTGTTGTGGCATGGACAATCCTGAGG
GATGATCAGAAACGCCAACGCTATGATCGATATGGATCAAGTGGGCTTTG
A

protein sequence of Gvermi5298.t1

>Gvermi5298.t1 ID=Gvermi5298.t1|Name=Gvermi5298.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=617bp
MSAAFVALNPLPSLASRSVLPRHAAAPTLRPALHPRMSFSSEPIQQLWRY
LFSQIQSGPVSTPFEAANNFVEEQLPYHHASILSIQPITAAHDLVQVTVD
VAEARLNESYTTPGQFVRLASPDTKRSVLLAIASPPDATSTHFNFILSPK
THRQLLKRLKQGGTVSISDIMGEGLFVNLPRGCNLHVLADSAQGFAAVSS
LLEWGPFRASTGEGCNRTSQINIYTSIPTRNSMPYARKLSRWTAFGVSVF
PVVSSGLVQFVTSAVLGSQHSLANDQALVCVAEDDTFNALQSALLLCGFR
RSLIHKWTVREMSRFVHQPRYSNKNDLEPEDGYNDFMRTGFERRVWQSWV
GVREDMRRDFENKWSAQRRMNRDEAASEREKANAWASWSAKNRDQWQQVQ
WDNVSWKHYWKSWDQQRSRWKGESEWPHANQKAWTQSKSQEYWDWVGTGT
GRGKTAGGGSSSYYEKHSEGKWSGSTGWNGNSKGGYQRGYRYEHRDTGQN
AHNRSHDWGSNPGNSWGGWSYDESRRKSYSSSNRGYGSARQGADFDFYNI
LGIKSGASRAEIKKAYRQKAMEHHPDRNPNNVEEANVKMKQIVVAWTILR
DDQKRQRYDRYGSSGL*

mRNA from alignment at ScGOVlb_24228:1131997..1133847+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi5298.t1 ID=Gvermi5298.t1|Name=Gvermi5298.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1851bp|location=Sequence derived from alignment at ScGOVlb_24228:1131997..1133847+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCAGCCTTCGTTGCGCTCAATCCCTTGCCTTCGTTGGCCTCGCG
CTCCGTTCTTCCGCGCCATGCTGCCGCCCCCACCTTGCGCCCTGCTTTAC
ACCCTCGCATGAGCTTTTCCTCCGAGCCCATACAACAATTATGGCGCTAT
TTGTTTTCCCAAATACAGTCCGGACCCGTTTCTACTCCGTTTGAAGCTGC
CAATAACTTTGTCGAGGAACAGCTACCCTATCATCACGCCTCAATTCTTT
CCATTCAACCGATTACCGCCGCCCACGACCTCGTGCAGGTAACCGTCGAC
GTTGCCGAAGCGCGTCTCAATGAATCTTACACGACTCCGGGCCAGTTTGT
ACGTCTTGCTTCACCAGATACCAAGCGTTCAGTATTACTTGCCATTGCCT
CGCCACCGGACGCTACTTCCACACACTTCAACTTCATTCTTTCTCCAAAG
ACCCACCGACAGCTGCTGAAACGCCTCAAACAGGGTGGAACCGTTTCCAT
TTCCGACATTATGGGTGAAGGGCTCTTTGTCAATCTACCTCGCGGTTGCA
ACCTCCACGTACTTGCCGACTCGGCGCAGGGCTTTGCCGCCGTTTCTTCC
TTGCTTGAGTGGGGTCCTTTTCGTGCCTCAACTGGCGAAGGTTGCAATCG
CACCAGCCAAATTAATATATACACCTCAATTCCGACACGGAATAGCATGC
CCTATGCACGCAAGCTTTCCAGATGGACTGCTTTTGGTGTGTCCGTTTTC
CCTGTTGTATCCTCTGGCCTTGTACAATTCGTTACTTCTGCTGTGTTGGG
CTCACAGCATTCTCTCGCAAACGACCAAGCATTGGTGTGCGTCGCTGAGG
ATGACACATTTAATGCCCTCCAGAGTGCTCTCTTGTTGTGCGGCTTTCGC
AGATCTCTTATTCACAAGTGGACTGTGCGAGAAATGTCGCGCTTTGTTCA
TCAGCCGCGGTATTCGAACAAAAATGATCTGGAGCCAGAGGATGGGTACA
ATGACTTCATGCGCACCGGGTTTGAACGTCGGGTCTGGCAGAGTTGGGTC
GGCGTACGAGAAGACATGCGTCGTGATTTTGAGAACAAATGGTCTGCTCA
GCGCAGAATGAACAGGGATGAGGCTGCGAGCGAACGGGAAAAGGCCAATG
CCTGGGCTTCATGGTCGGCCAAAAATCGTGATCAGTGGCAGCAAGTGCAA
TGGGATAACGTGTCCTGGAAGCATTACTGGAAGTCGTGGGATCAACAAAG
AAGTCGGTGGAAAGGTGAGAGTGAATGGCCCCATGCGAATCAGAAGGCTT
GGACCCAGTCAAAATCGCAGGAATACTGGGATTGGGTTGGCACTGGTACA
GGCAGGGGAAAAACAGCGGGTGGTGGTTCATCTTCTTATTACGAGAAACA
CTCCGAAGGCAAGTGGAGCGGATCCACTGGGTGGAATGGAAACAGTAAAG
GAGGATACCAGCGAGGTTATCGGTATGAACATCGCGACACTGGGCAGAAC
GCGCATAACAGATCGCATGACTGGGGCTCCAATCCAGGAAACAGTTGGGG
TGGATGGAGTTATGACGAATCACGGCGCAAGTCGTACTCTTCAAGCAATC
GTGGCTACGGCTCTGCGAGACAGGGAGCCGATTTCGACTTCTACAACATC
CTTGGCATCAAATCAGGCGCTTCTAGAGCTGAGATTAAGAAGGCATACAG
GCAGAAGGCGATGGAACATCATCCTGATCGAAATCCCAACAATGTGGAAG
AAGCGAATGTGAAAATGAAGCAAATTGTTGTGGCATGGACAATCCTGAGG
GATGATCAGAAACGCCAACGCTATGATCGATATGGATCAAGTGGGCTTTG
A

Coding sequence (CDS) from alignment at ScGOVlb_24228:1131997..1133847+

>Gvermi5298.t1 ID=Gvermi5298.t1|Name=Gvermi5298.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1851bp|location=Sequence derived from alignment at ScGOVlb_24228:1131997..1133847+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTGCAGCCTTCGTTGCGCTCAATCCCTTGCCTTCGTTGGCCTCGCG
CTCCGTTCTTCCGCGCCATGCTGCCGCCCCCACCTTGCGCCCTGCTTTAC
ACCCTCGCATGAGCTTTTCCTCCGAGCCCATACAACAATTATGGCGCTAT
TTGTTTTCCCAAATACAGTCCGGACCCGTTTCTACTCCGTTTGAAGCTGC
CAATAACTTTGTCGAGGAACAGCTACCCTATCATCACGCCTCAATTCTTT
CCATTCAACCGATTACCGCCGCCCACGACCTCGTGCAGGTAACCGTCGAC
GTTGCCGAAGCGCGTCTCAATGAATCTTACACGACTCCGGGCCAGTTTGT
ACGTCTTGCTTCACCAGATACCAAGCGTTCAGTATTACTTGCCATTGCCT
CGCCACCGGACGCTACTTCCACACACTTCAACTTCATTCTTTCTCCAAAG
ACCCACCGACAGCTGCTGAAACGCCTCAAACAGGGTGGAACCGTTTCCAT
TTCCGACATTATGGGTGAAGGGCTCTTTGTCAATCTACCTCGCGGTTGCA
ACCTCCACGTACTTGCCGACTCGGCGCAGGGCTTTGCCGCCGTTTCTTCC
TTGCTTGAGTGGGGTCCTTTTCGTGCCTCAACTGGCGAAGGTTGCAATCG
CACCAGCCAAATTAATATATACACCTCAATTCCGACACGGAATAGCATGC
CCTATGCACGCAAGCTTTCCAGATGGACTGCTTTTGGTGTGTCCGTTTTC
CCTGTTGTATCCTCTGGCCTTGTACAATTCGTTACTTCTGCTGTGTTGGG
CTCACAGCATTCTCTCGCAAACGACCAAGCATTGGTGTGCGTCGCTGAGG
ATGACACATTTAATGCCCTCCAGAGTGCTCTCTTGTTGTGCGGCTTTCGC
AGATCTCTTATTCACAAGTGGACTGTGCGAGAAATGTCGCGCTTTGTTCA
TCAGCCGCGGTATTCGAACAAAAATGATCTGGAGCCAGAGGATGGGTACA
ATGACTTCATGCGCACCGGGTTTGAACGTCGGGTCTGGCAGAGTTGGGTC
GGCGTACGAGAAGACATGCGTCGTGATTTTGAGAACAAATGGTCTGCTCA
GCGCAGAATGAACAGGGATGAGGCTGCGAGCGAACGGGAAAAGGCCAATG
CCTGGGCTTCATGGTCGGCCAAAAATCGTGATCAGTGGCAGCAAGTGCAA
TGGGATAACGTGTCCTGGAAGCATTACTGGAAGTCGTGGGATCAACAAAG
AAGTCGGTGGAAAGGTGAGAGTGAATGGCCCCATGCGAATCAGAAGGCTT
GGACCCAGTCAAAATCGCAGGAATACTGGGATTGGGTTGGCACTGGTACA
GGCAGGGGAAAAACAGCGGGTGGTGGTTCATCTTCTTATTACGAGAAACA
CTCCGAAGGCAAGTGGAGCGGATCCACTGGGTGGAATGGAAACAGTAAAG
GAGGATACCAGCGAGGTTATCGGTATGAACATCGCGACACTGGGCAGAAC
GCGCATAACAGATCGCATGACTGGGGCTCCAATCCAGGAAACAGTTGGGG
TGGATGGAGTTATGACGAATCACGGCGCAAGTCGTACTCTTCAAGCAATC
GTGGCTACGGCTCTGCGAGACAGGGAGCCGATTTCGACTTCTACAACATC
CTTGGCATCAAATCAGGCGCTTCTAGAGCTGAGATTAAGAAGGCATACAG
GCAGAAGGCGATGGAACATCATCCTGATCGAAATCCCAACAATGTGGAAG
AAGCGAATGTGAAAATGAAGCAAATTGTTGTGGCATGGACAATCCTGAGG
GATGATCAGAAACGCCAACGCTATGATCGATATGGATCAAGTGGGCTTTG
A