Gvermi5289.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5289.t1
Unique NameGvermi5289.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length607
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:977569..979389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5289Gvermi5289Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 977569..979389 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5289.t1.stop1Gvermi5289.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 977569..977571 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5289.t1.CDS1Gvermi5289.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 977569..979389 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5289.t1.exon1Gvermi5289.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 977569..979389 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5289.t1.start1Gvermi5289.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 979387..979389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5289.t1Gvermi5289.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 977569..979389 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5289.t1 ID=Gvermi5289.t1|Name=Gvermi5289.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=607bp
MREATWTPEAKKLFLRHLAAKVRYAALPSTEEDDILVSLVGKLHPNTCSV
VQFSYIYDMSIVDEKTASALDSDLQSIQKQSTSIFVDGSAVADKFWETLQ
SDTNFRPSDNPQVYNVLIYDAISVAPQYGYRAEGGGAVGTVALASEKRFA
VIDVGAKPFFLAAESLTVGDLLAANSKSWGDYALELHSITSKLLTPPAST
KMRRFPQETRLFFKLSLVDVSAVIGRMSGVAGDSEGNKPLGVSFNAKQFE
TVLNTLFHNHVIPDKEVSISTEEVDMMMDARMAMAVSRSFSVKGLEMVLD
SELLIRSLMWNSTERYGYFVDSSFIAHIPMYLFSFADDSRITHFDTGEQL
RARVVGKEAVVLAENRLRDASVDEHVSITSEATKEVLELLCGLEQDTLSQ
LSAQNGVVPVILRDIARRNILVQELDWSQVASWKAKELLDFEGLDSRLIP
HQKGSRIEMGRDKVRDSLRTLSDGWHKAAMSVSFENIESATMNLMGLSNE
LADMLHEEVCNQALPEEILLKAEVMGDKHLSGKQEHGSRFPVYVVFSAIA
GIVCGAFMHRKAVKQSSFRGTYLDDLSIAPAVRNLDVTGTSQWFSTLTSS
YKSKTH*
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spliced messenger RNA

>Gvermi5289.t1 ID=Gvermi5289.t1|Name=Gvermi5289.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1821bp|location=Sequence derived from alignment at ScGOVlb_24228:977569..979389- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGAGGCCACATGGACTCCGGAAGCGAAGAAACTGTTCTTACGCCA
TCTCGCTGCAAAAGTTCGCTACGCCGCGCTACCGAGTACAGAGGAAGACG
ACATTTTGGTGTCGCTGGTTGGAAAACTGCACCCTAACACATGTTCAGTT
GTGCAATTTTCATACATTTACGACATGAGCATCGTCGATGAAAAAACCGC
ATCAGCTTTGGATTCCGATCTCCAATCAATTCAAAAGCAGTCCACATCAA
TCTTTGTCGATGGCTCAGCAGTGGCGGACAAGTTTTGGGAAACGCTGCAA
TCCGATACAAATTTTAGGCCGAGTGACAATCCGCAAGTGTACAATGTGTT
GATTTATGACGCCATATCTGTAGCACCGCAATACGGTTACCGAGCGGAAG
GGGGTGGAGCTGTTGGCACAGTCGCATTGGCAAGCGAAAAACGATTTGCT
GTCATCGACGTCGGTGCCAAACCTTTCTTTTTGGCGGCCGAGTCTTTAAC
TGTCGGGGACTTACTTGCGGCAAATTCCAAGTCATGGGGAGATTACGCTC
TTGAACTTCATAGCATTACATCCAAACTTCTAACACCGCCAGCATCAACA
AAGATGCGTCGCTTCCCGCAAGAAACAAGACTTTTTTTTAAACTTAGTTT
GGTTGACGTTAGCGCTGTGATAGGGAGGATGTCTGGTGTGGCGGGAGATA
GTGAAGGAAACAAGCCACTGGGGGTCAGCTTTAACGCGAAACAGTTCGAG
ACGGTTCTGAACACGCTTTTCCACAATCATGTGATCCCGGATAAAGAAGT
GTCAATCTCGACAGAAGAAGTCGACATGATGATGGATGCGAGGATGGCCA
TGGCCGTGTCGCGGTCATTTTCTGTCAAGGGGCTCGAAATGGTTCTAGAT
AGTGAACTTCTAATCCGGAGCCTGATGTGGAACTCGACGGAACGTTATGG
TTACTTTGTTGACTCTTCCTTTATTGCTCACATACCTATGTATCTTTTCT
CCTTTGCCGACGACTCCAGAATAACACACTTTGACACAGGCGAGCAACTA
AGAGCACGAGTTGTGGGAAAGGAGGCAGTGGTTCTGGCAGAAAATAGACT
TCGAGATGCATCGGTGGATGAGCATGTGAGCATTACATCAGAAGCGACAA
AAGAAGTGTTGGAACTTCTGTGTGGATTGGAACAAGACACCTTATCACAG
CTGAGCGCCCAAAATGGAGTGGTGCCCGTAATTCTGAGAGACATTGCAAG
ACGGAATATCTTGGTTCAAGAGCTTGATTGGTCTCAAGTGGCCTCGTGGA
AGGCTAAAGAATTGTTGGACTTTGAAGGTCTGGATAGTCGTTTAATTCCG
CATCAAAAAGGAAGTCGTATTGAGATGGGCAGAGACAAAGTTCGCGATAG
CCTCCGAACACTCTCAGATGGATGGCACAAAGCGGCGATGTCGGTCTCGT
TTGAAAATATCGAATCTGCCACGATGAATTTGATGGGGTTGTCGAACGAG
CTAGCGGACATGCTTCACGAGGAAGTTTGCAACCAGGCCTTGCCCGAGGA
GATACTTTTAAAGGCAGAAGTGATGGGCGATAAACATTTGTCCGGGAAGC
AAGAACATGGTTCACGCTTTCCTGTCTACGTTGTCTTCTCTGCGATTGCA
GGCATTGTGTGCGGCGCGTTCATGCACAGGAAAGCTGTCAAACAGTCTAG
CTTTCGTGGCACATATCTCGATGATCTATCGATCGCTCCGGCGGTGCGAA
ACCTTGACGTCACAGGGACGTCTCAATGGTTTAGCACTTTAACTTCCTCG
TACAAATCCAAAACGCACTAA
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protein sequence of Gvermi5289.t1

>Gvermi5289.t1 ID=Gvermi5289.t1|Name=Gvermi5289.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=607bp
MREATWTPEAKKLFLRHLAAKVRYAALPSTEEDDILVSLVGKLHPNTCSV
VQFSYIYDMSIVDEKTASALDSDLQSIQKQSTSIFVDGSAVADKFWETLQ
SDTNFRPSDNPQVYNVLIYDAISVAPQYGYRAEGGGAVGTVALASEKRFA
VIDVGAKPFFLAAESLTVGDLLAANSKSWGDYALELHSITSKLLTPPAST
KMRRFPQETRLFFKLSLVDVSAVIGRMSGVAGDSEGNKPLGVSFNAKQFE
TVLNTLFHNHVIPDKEVSISTEEVDMMMDARMAMAVSRSFSVKGLEMVLD
SELLIRSLMWNSTERYGYFVDSSFIAHIPMYLFSFADDSRITHFDTGEQL
RARVVGKEAVVLAENRLRDASVDEHVSITSEATKEVLELLCGLEQDTLSQ
LSAQNGVVPVILRDIARRNILVQELDWSQVASWKAKELLDFEGLDSRLIP
HQKGSRIEMGRDKVRDSLRTLSDGWHKAAMSVSFENIESATMNLMGLSNE
LADMLHEEVCNQALPEEILLKAEVMGDKHLSGKQEHGSRFPVYVVFSAIA
GIVCGAFMHRKAVKQSSFRGTYLDDLSIAPAVRNLDVTGTSQWFSTLTSS
YKSKTH*
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mRNA from alignment at ScGOVlb_24228:977569..979389-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5289.t1 ID=Gvermi5289.t1|Name=Gvermi5289.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1821bp|location=Sequence derived from alignment at ScGOVlb_24228:977569..979389- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTGAGGCCACATGGACTCCGGAAGCGAAGAAACTGTTCTTACGCCA
TCTCGCTGCAAAAGTTCGCTACGCCGCGCTACCGAGTACAGAGGAAGACG
ACATTTTGGTGTCGCTGGTTGGAAAACTGCACCCTAACACATGTTCAGTT
GTGCAATTTTCATACATTTACGACATGAGCATCGTCGATGAAAAAACCGC
ATCAGCTTTGGATTCCGATCTCCAATCAATTCAAAAGCAGTCCACATCAA
TCTTTGTCGATGGCTCAGCAGTGGCGGACAAGTTTTGGGAAACGCTGCAA
TCCGATACAAATTTTAGGCCGAGTGACAATCCGCAAGTGTACAATGTGTT
GATTTATGACGCCATATCTGTAGCACCGCAATACGGTTACCGAGCGGAAG
GGGGTGGAGCTGTTGGCACAGTCGCATTGGCAAGCGAAAAACGATTTGCT
GTCATCGACGTCGGTGCCAAACCTTTCTTTTTGGCGGCCGAGTCTTTAAC
TGTCGGGGACTTACTTGCGGCAAATTCCAAGTCATGGGGAGATTACGCTC
TTGAACTTCATAGCATTACATCCAAACTTCTAACACCGCCAGCATCAACA
AAGATGCGTCGCTTCCCGCAAGAAACAAGACTTTTTTTTAAACTTAGTTT
GGTTGACGTTAGCGCTGTGATAGGGAGGATGTCTGGTGTGGCGGGAGATA
GTGAAGGAAACAAGCCACTGGGGGTCAGCTTTAACGCGAAACAGTTCGAG
ACGGTTCTGAACACGCTTTTCCACAATCATGTGATCCCGGATAAAGAAGT
GTCAATCTCGACAGAAGAAGTCGACATGATGATGGATGCGAGGATGGCCA
TGGCCGTGTCGCGGTCATTTTCTGTCAAGGGGCTCGAAATGGTTCTAGAT
AGTGAACTTCTAATCCGGAGCCTGATGTGGAACTCGACGGAACGTTATGG
TTACTTTGTTGACTCTTCCTTTATTGCTCACATACCTATGTATCTTTTCT
CCTTTGCCGACGACTCCAGAATAACACACTTTGACACAGGCGAGCAACTA
AGAGCACGAGTTGTGGGAAAGGAGGCAGTGGTTCTGGCAGAAAATAGACT
TCGAGATGCATCGGTGGATGAGCATGTGAGCATTACATCAGAAGCGACAA
AAGAAGTGTTGGAACTTCTGTGTGGATTGGAACAAGACACCTTATCACAG
CTGAGCGCCCAAAATGGAGTGGTGCCCGTAATTCTGAGAGACATTGCAAG
ACGGAATATCTTGGTTCAAGAGCTTGATTGGTCTCAAGTGGCCTCGTGGA
AGGCTAAAGAATTGTTGGACTTTGAAGGTCTGGATAGTCGTTTAATTCCG
CATCAAAAAGGAAGTCGTATTGAGATGGGCAGAGACAAAGTTCGCGATAG
CCTCCGAACACTCTCAGATGGATGGCACAAAGCGGCGATGTCGGTCTCGT
TTGAAAATATCGAATCTGCCACGATGAATTTGATGGGGTTGTCGAACGAG
CTAGCGGACATGCTTCACGAGGAAGTTTGCAACCAGGCCTTGCCCGAGGA
GATACTTTTAAAGGCAGAAGTGATGGGCGATAAACATTTGTCCGGGAAGC
AAGAACATGGTTCACGCTTTCCTGTCTACGTTGTCTTCTCTGCGATTGCA
GGCATTGTGTGCGGCGCGTTCATGCACAGGAAAGCTGTCAAACAGTCTAG
CTTTCGTGGCACATATCTCGATGATCTATCGATCGCTCCGGCGGTGCGAA
ACCTTGACGTCACAGGGACGTCTCAATGGTTTAGCACTTTAACTTCCTCG
TACAAATCCAAAACGCACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24228:977569..979389-

>Gvermi5289.t1 ID=Gvermi5289.t1|Name=Gvermi5289.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1821bp|location=Sequence derived from alignment at ScGOVlb_24228:977569..979389- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTGAGGCCACATGGACTCCGGAAGCGAAGAAACTGTTCTTACGCCA
TCTCGCTGCAAAAGTTCGCTACGCCGCGCTACCGAGTACAGAGGAAGACG
ACATTTTGGTGTCGCTGGTTGGAAAACTGCACCCTAACACATGTTCAGTT
GTGCAATTTTCATACATTTACGACATGAGCATCGTCGATGAAAAAACCGC
ATCAGCTTTGGATTCCGATCTCCAATCAATTCAAAAGCAGTCCACATCAA
TCTTTGTCGATGGCTCAGCAGTGGCGGACAAGTTTTGGGAAACGCTGCAA
TCCGATACAAATTTTAGGCCGAGTGACAATCCGCAAGTGTACAATGTGTT
GATTTATGACGCCATATCTGTAGCACCGCAATACGGTTACCGAGCGGAAG
GGGGTGGAGCTGTTGGCACAGTCGCATTGGCAAGCGAAAAACGATTTGCT
GTCATCGACGTCGGTGCCAAACCTTTCTTTTTGGCGGCCGAGTCTTTAAC
TGTCGGGGACTTACTTGCGGCAAATTCCAAGTCATGGGGAGATTACGCTC
TTGAACTTCATAGCATTACATCCAAACTTCTAACACCGCCAGCATCAACA
AAGATGCGTCGCTTCCCGCAAGAAACAAGACTTTTTTTTAAACTTAGTTT
GGTTGACGTTAGCGCTGTGATAGGGAGGATGTCTGGTGTGGCGGGAGATA
GTGAAGGAAACAAGCCACTGGGGGTCAGCTTTAACGCGAAACAGTTCGAG
ACGGTTCTGAACACGCTTTTCCACAATCATGTGATCCCGGATAAAGAAGT
GTCAATCTCGACAGAAGAAGTCGACATGATGATGGATGCGAGGATGGCCA
TGGCCGTGTCGCGGTCATTTTCTGTCAAGGGGCTCGAAATGGTTCTAGAT
AGTGAACTTCTAATCCGGAGCCTGATGTGGAACTCGACGGAACGTTATGG
TTACTTTGTTGACTCTTCCTTTATTGCTCACATACCTATGTATCTTTTCT
CCTTTGCCGACGACTCCAGAATAACACACTTTGACACAGGCGAGCAACTA
AGAGCACGAGTTGTGGGAAAGGAGGCAGTGGTTCTGGCAGAAAATAGACT
TCGAGATGCATCGGTGGATGAGCATGTGAGCATTACATCAGAAGCGACAA
AAGAAGTGTTGGAACTTCTGTGTGGATTGGAACAAGACACCTTATCACAG
CTGAGCGCCCAAAATGGAGTGGTGCCCGTAATTCTGAGAGACATTGCAAG
ACGGAATATCTTGGTTCAAGAGCTTGATTGGTCTCAAGTGGCCTCGTGGA
AGGCTAAAGAATTGTTGGACTTTGAAGGTCTGGATAGTCGTTTAATTCCG
CATCAAAAAGGAAGTCGTATTGAGATGGGCAGAGACAAAGTTCGCGATAG
CCTCCGAACACTCTCAGATGGATGGCACAAAGCGGCGATGTCGGTCTCGT
TTGAAAATATCGAATCTGCCACGATGAATTTGATGGGGTTGTCGAACGAG
CTAGCGGACATGCTTCACGAGGAAGTTTGCAACCAGGCCTTGCCCGAGGA
GATACTTTTAAAGGCAGAAGTGATGGGCGATAAACATTTGTCCGGGAAGC
AAGAACATGGTTCACGCTTTCCTGTCTACGTTGTCTTCTCTGCGATTGCA
GGCATTGTGTGCGGCGCGTTCATGCACAGGAAAGCTGTCAAACAGTCTAG
CTTTCGTGGCACATATCTCGATGATCTATCGATCGCTCCGGCGGTGCGAA
ACCTTGACGTCACAGGGACGTCTCAATGGTTTAGCACTTTAACTTCCTCG
TACAAATCCAAAACGCACTAA
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