Gvermi5172.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5172.t1
Unique NameGvermi5172.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length468
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:507752..509155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004995239.1
PFAMsPyr_redox_2
Max annot lvl2759|Eukaryota
Evalue2.88e-72
EggNOG OGsCOG1252@1|root,2S15X@2759|Eukaryota
DescriptionPyridine nucleotide-disulphide oxidoreductase
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5172Gvermi5172Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 507752..509155 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5172.t1.start1Gvermi5172.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 507752..507754 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5172.t1.CDS1Gvermi5172.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 507752..509155 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5172.t1.exon1Gvermi5172.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 507752..509155 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5172.t1.stop1Gvermi5172.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 509153..509155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5172.t1Gvermi5172.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 507752..509155 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5172.t1 ID=Gvermi5172.t1|Name=Gvermi5172.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=468bp
MTDRGKVLLLVGGGHSHVQVVHSLRCDPAVQCVLISDAPDAVYSGMLPAV
VAGLIPHASSLVHLQPLCDAHNFHFVQGTVVRVEPSSKRVFFTAPRSTLE
CSLRYDVLSIDIGSRTRDLTPSPASSEGRDAPAPDALPLVVRTRPISQLQ
SSVCSFERLAKRAALKCASVVVVGAGAAGIELALALEARLRRSVGDVIVT
LVSKHDAIASQFGKMTGAVVAAECRKRAIQMRIGCDVLSVSDGVIRLDDD
TMLSYDMAVLATGAASHQVSRNMGLQLDDDGWILVDGTLRCRGQQDVFAA
GDCISFGALYGDRFPPKAGVYAVREGPILTHNLQQRLRNSQKMSEFVPQP
SFLSLLSTGDGRGIGTKYGLAFTGTWVYRMKHFIDERWQNRFRVGDDSER
ELDGEQLTESTFDGEAAEGAALLLSSEDINEHDSFERQLSVLRRMDADQN
FREQLMQCVSSDSGQSV*
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spliced messenger RNA

>Gvermi5172.t1 ID=Gvermi5172.t1|Name=Gvermi5172.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at ScGOVlb_24228:507752..509155+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGATCGCGGCAAGGTGCTGCTGCTCGTCGGAGGTGGGCACTCGCA
CGTGCAGGTGGTTCACAGTCTGCGCTGCGACCCCGCCGTCCAATGCGTGC
TCATCTCCGACGCGCCCGACGCTGTGTACAGCGGCATGCTCCCGGCCGTG
GTCGCCGGCCTCATCCCGCACGCTAGCTCGCTCGTTCATCTGCAACCGCT
GTGCGATGCGCACAACTTCCACTTCGTGCAAGGAACAGTCGTGAGGGTCG
AGCCCAGTTCCAAACGTGTCTTCTTCACCGCCCCGCGTTCCACGCTGGAA
TGCTCGCTACGGTATGACGTGCTGTCCATCGACATTGGCAGTCGCACTCG
AGACCTTACGCCTTCCCCCGCTTCGAGCGAGGGGCGTGATGCGCCTGCCC
CCGACGCGCTTCCGCTCGTGGTGCGTACGCGTCCCATCTCGCAGCTGCAG
AGTTCCGTGTGCAGCTTTGAGCGCCTGGCAAAACGCGCCGCGCTCAAGTG
CGCGTCGGTGGTCGTCGTGGGCGCAGGCGCCGCGGGCATAGAACTGGCGC
TCGCGCTCGAGGCTCGGCTGAGACGCTCAGTAGGCGATGTGATCGTCACG
CTGGTTTCAAAGCACGATGCCATCGCCTCGCAGTTTGGAAAGATGACTGG
CGCCGTCGTGGCCGCAGAGTGTCGAAAGCGAGCCATTCAAATGCGCATTG
GATGTGACGTACTGTCTGTTAGTGATGGTGTGATTCGCTTGGATGATGAT
ACCATGCTTAGCTATGACATGGCTGTCCTGGCCACTGGCGCCGCCTCACA
CCAAGTGTCGCGCAACATGGGGTTGCAGCTTGACGACGATGGGTGGATCT
TGGTGGATGGCACACTGCGGTGCAGGGGTCAGCAGGACGTGTTTGCGGCC
GGTGACTGCATCTCGTTCGGTGCGCTATACGGAGATCGATTTCCACCTAA
AGCGGGCGTTTACGCGGTCAGAGAAGGACCAATTTTGACGCATAATCTGC
AACAACGTCTGAGAAATTCGCAAAAAATGTCCGAGTTTGTTCCACAACCT
TCATTTCTGTCACTGTTATCGACCGGTGACGGCAGGGGAATAGGCACCAA
GTACGGGTTGGCTTTCACGGGGACTTGGGTTTATCGCATGAAGCATTTCA
TTGATGAAAGATGGCAGAATCGTTTTCGTGTTGGTGACGATAGCGAACGG
GAGTTGGATGGCGAGCAGCTGACAGAGTCCACGTTTGACGGCGAAGCGGC
GGAGGGTGCTGCTTTGCTGCTTTCTTCAGAGGACATTAACGAGCACGATA
GCTTCGAGCGCCAACTCTCTGTGTTGCGCAGAATGGATGCCGACCAAAAT
TTCCGCGAACAGTTGATGCAATGCGTAAGCTCTGATTCGGGCCAAAGTGT
GTGA
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protein sequence of Gvermi5172.t1

>Gvermi5172.t1 ID=Gvermi5172.t1|Name=Gvermi5172.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=468bp
MTDRGKVLLLVGGGHSHVQVVHSLRCDPAVQCVLISDAPDAVYSGMLPAV
VAGLIPHASSLVHLQPLCDAHNFHFVQGTVVRVEPSSKRVFFTAPRSTLE
CSLRYDVLSIDIGSRTRDLTPSPASSEGRDAPAPDALPLVVRTRPISQLQ
SSVCSFERLAKRAALKCASVVVVGAGAAGIELALALEARLRRSVGDVIVT
LVSKHDAIASQFGKMTGAVVAAECRKRAIQMRIGCDVLSVSDGVIRLDDD
TMLSYDMAVLATGAASHQVSRNMGLQLDDDGWILVDGTLRCRGQQDVFAA
GDCISFGALYGDRFPPKAGVYAVREGPILTHNLQQRLRNSQKMSEFVPQP
SFLSLLSTGDGRGIGTKYGLAFTGTWVYRMKHFIDERWQNRFRVGDDSER
ELDGEQLTESTFDGEAAEGAALLLSSEDINEHDSFERQLSVLRRMDADQN
FREQLMQCVSSDSGQSV*
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mRNA from alignment at ScGOVlb_24228:507752..509155+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5172.t1 ID=Gvermi5172.t1|Name=Gvermi5172.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at ScGOVlb_24228:507752..509155+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGATCGCGGCAAGGTGCTGCTGCTCGTCGGAGGTGGGCACTCGCA
CGTGCAGGTGGTTCACAGTCTGCGCTGCGACCCCGCCGTCCAATGCGTGC
TCATCTCCGACGCGCCCGACGCTGTGTACAGCGGCATGCTCCCGGCCGTG
GTCGCCGGCCTCATCCCGCACGCTAGCTCGCTCGTTCATCTGCAACCGCT
GTGCGATGCGCACAACTTCCACTTCGTGCAAGGAACAGTCGTGAGGGTCG
AGCCCAGTTCCAAACGTGTCTTCTTCACCGCCCCGCGTTCCACGCTGGAA
TGCTCGCTACGGTATGACGTGCTGTCCATCGACATTGGCAGTCGCACTCG
AGACCTTACGCCTTCCCCCGCTTCGAGCGAGGGGCGTGATGCGCCTGCCC
CCGACGCGCTTCCGCTCGTGGTGCGTACGCGTCCCATCTCGCAGCTGCAG
AGTTCCGTGTGCAGCTTTGAGCGCCTGGCAAAACGCGCCGCGCTCAAGTG
CGCGTCGGTGGTCGTCGTGGGCGCAGGCGCCGCGGGCATAGAACTGGCGC
TCGCGCTCGAGGCTCGGCTGAGACGCTCAGTAGGCGATGTGATCGTCACG
CTGGTTTCAAAGCACGATGCCATCGCCTCGCAGTTTGGAAAGATGACTGG
CGCCGTCGTGGCCGCAGAGTGTCGAAAGCGAGCCATTCAAATGCGCATTG
GATGTGACGTACTGTCTGTTAGTGATGGTGTGATTCGCTTGGATGATGAT
ACCATGCTTAGCTATGACATGGCTGTCCTGGCCACTGGCGCCGCCTCACA
CCAAGTGTCGCGCAACATGGGGTTGCAGCTTGACGACGATGGGTGGATCT
TGGTGGATGGCACACTGCGGTGCAGGGGTCAGCAGGACGTGTTTGCGGCC
GGTGACTGCATCTCGTTCGGTGCGCTATACGGAGATCGATTTCCACCTAA
AGCGGGCGTTTACGCGGTCAGAGAAGGACCAATTTTGACGCATAATCTGC
AACAACGTCTGAGAAATTCGCAAAAAATGTCCGAGTTTGTTCCACAACCT
TCATTTCTGTCACTGTTATCGACCGGTGACGGCAGGGGAATAGGCACCAA
GTACGGGTTGGCTTTCACGGGGACTTGGGTTTATCGCATGAAGCATTTCA
TTGATGAAAGATGGCAGAATCGTTTTCGTGTTGGTGACGATAGCGAACGG
GAGTTGGATGGCGAGCAGCTGACAGAGTCCACGTTTGACGGCGAAGCGGC
GGAGGGTGCTGCTTTGCTGCTTTCTTCAGAGGACATTAACGAGCACGATA
GCTTCGAGCGCCAACTCTCTGTGTTGCGCAGAATGGATGCCGACCAAAAT
TTCCGCGAACAGTTGATGCAATGCGTAAGCTCTGATTCGGGCCAAAGTGT
GTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24228:507752..509155+

>Gvermi5172.t1 ID=Gvermi5172.t1|Name=Gvermi5172.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1404bp|location=Sequence derived from alignment at ScGOVlb_24228:507752..509155+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGATCGCGGCAAGGTGCTGCTGCTCGTCGGAGGTGGGCACTCGCA
CGTGCAGGTGGTTCACAGTCTGCGCTGCGACCCCGCCGTCCAATGCGTGC
TCATCTCCGACGCGCCCGACGCTGTGTACAGCGGCATGCTCCCGGCCGTG
GTCGCCGGCCTCATCCCGCACGCTAGCTCGCTCGTTCATCTGCAACCGCT
GTGCGATGCGCACAACTTCCACTTCGTGCAAGGAACAGTCGTGAGGGTCG
AGCCCAGTTCCAAACGTGTCTTCTTCACCGCCCCGCGTTCCACGCTGGAA
TGCTCGCTACGGTATGACGTGCTGTCCATCGACATTGGCAGTCGCACTCG
AGACCTTACGCCTTCCCCCGCTTCGAGCGAGGGGCGTGATGCGCCTGCCC
CCGACGCGCTTCCGCTCGTGGTGCGTACGCGTCCCATCTCGCAGCTGCAG
AGTTCCGTGTGCAGCTTTGAGCGCCTGGCAAAACGCGCCGCGCTCAAGTG
CGCGTCGGTGGTCGTCGTGGGCGCAGGCGCCGCGGGCATAGAACTGGCGC
TCGCGCTCGAGGCTCGGCTGAGACGCTCAGTAGGCGATGTGATCGTCACG
CTGGTTTCAAAGCACGATGCCATCGCCTCGCAGTTTGGAAAGATGACTGG
CGCCGTCGTGGCCGCAGAGTGTCGAAAGCGAGCCATTCAAATGCGCATTG
GATGTGACGTACTGTCTGTTAGTGATGGTGTGATTCGCTTGGATGATGAT
ACCATGCTTAGCTATGACATGGCTGTCCTGGCCACTGGCGCCGCCTCACA
CCAAGTGTCGCGCAACATGGGGTTGCAGCTTGACGACGATGGGTGGATCT
TGGTGGATGGCACACTGCGGTGCAGGGGTCAGCAGGACGTGTTTGCGGCC
GGTGACTGCATCTCGTTCGGTGCGCTATACGGAGATCGATTTCCACCTAA
AGCGGGCGTTTACGCGGTCAGAGAAGGACCAATTTTGACGCATAATCTGC
AACAACGTCTGAGAAATTCGCAAAAAATGTCCGAGTTTGTTCCACAACCT
TCATTTCTGTCACTGTTATCGACCGGTGACGGCAGGGGAATAGGCACCAA
GTACGGGTTGGCTTTCACGGGGACTTGGGTTTATCGCATGAAGCATTTCA
TTGATGAAAGATGGCAGAATCGTTTTCGTGTTGGTGACGATAGCGAACGG
GAGTTGGATGGCGAGCAGCTGACAGAGTCCACGTTTGACGGCGAAGCGGC
GGAGGGTGCTGCTTTGCTGCTTTCTTCAGAGGACATTAACGAGCACGATA
GCTTCGAGCGCCAACTCTCTGTGTTGCGCAGAATGGATGCCGACCAAAAT
TTCCGCGAACAGTTGATGCAATGCGTAAGCTCTGATTCGGGCCAAAGTGT
GTGA
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