Gvermi5160.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5160.t2
Unique NameGvermi5160.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:482091..482723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705997.1
Preferred nameCCT6
PFAMsCpn60_TCP1
Max annot lvl2759|Eukaryota
KEGG koko:K09498
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005856,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044183,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0051082,GO:0061077,GO:0101031
Evalue2.92e-86
EggNOG OGsCOG0459@1|root,KOG0359@2759|Eukaryota
Descriptionunfolded protein binding
COG categoryO
BRITEko00000,ko03110,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5160Gvermi5160Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 481134..482723 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5160.t2.start1Gvermi5160.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 482091..482093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5160.t2.CDS1Gvermi5160.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 482091..482723 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5160.t2.exon1Gvermi5160.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 482091..482723 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5160.t2.stop1Gvermi5160.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 482721..482723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5160.t2Gvermi5160.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 482091..482723 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5160.t2 ID=Gvermi5160.t2|Name=Gvermi5160.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=211bp
MERITMACGGIPVNSVEGLTIDDLGFAGAVYEEVHEDDKYTFVEEVKNPF
SCTVLIRGPNKHTITQMKDAVRDGLRAVKNTMEDQCVLPGAGAFEIAAHA
HLKKFANKSITGKTKLGVTAFAEALLVIPKTLAETSGHDALDCIIKLEEE
NAKGHFAGLDLATGEPLDPNASGIYDNYIVKRQMLGLASIISTQLLLVDE
ILRAGRDTTR*
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spliced messenger RNA

>Gvermi5160.t2 ID=Gvermi5160.t2|Name=Gvermi5160.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=633bp|location=Sequence derived from alignment at ScGOVlb_24228:482091..482723+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGAATTACCATGGCATGTGGCGGAATTCCTGTCAATTCCGTCGA
GGGATTAACAATAGATGATCTTGGATTTGCAGGGGCTGTGTACGAAGAAG
TTCATGAGGACGACAAGTATACATTTGTTGAGGAAGTGAAGAATCCTTTC
AGTTGTACGGTGCTCATTCGCGGCCCCAATAAGCACACGATTACGCAAAT
GAAAGATGCTGTTCGTGATGGACTGCGTGCTGTCAAGAACACCATGGAAG
ATCAGTGTGTCCTTCCTGGGGCAGGTGCCTTTGAAATAGCTGCCCATGCA
CATTTGAAGAAATTTGCCAACAAAAGCATTACTGGCAAGACTAAGTTGGG
GGTGACAGCTTTTGCCGAAGCGTTATTGGTAATTCCAAAAACACTCGCAG
AAACTAGTGGACATGATGCACTTGATTGTATCATAAAACTGGAAGAAGAA
AACGCTAAAGGTCATTTCGCAGGACTAGACCTTGCCACAGGTGAGCCACT
TGATCCGAACGCTAGTGGAATTTACGACAATTACATCGTGAAACGTCAAA
TGTTGGGTTTGGCGTCCATCATAAGCACCCAACTTTTATTGGTCGACGAA
ATTTTGCGAGCCGGACGAGATACAACTCGTTAA
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protein sequence of Gvermi5160.t2

>Gvermi5160.t2 ID=Gvermi5160.t2|Name=Gvermi5160.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=211bp
MERITMACGGIPVNSVEGLTIDDLGFAGAVYEEVHEDDKYTFVEEVKNPF
SCTVLIRGPNKHTITQMKDAVRDGLRAVKNTMEDQCVLPGAGAFEIAAHA
HLKKFANKSITGKTKLGVTAFAEALLVIPKTLAETSGHDALDCIIKLEEE
NAKGHFAGLDLATGEPLDPNASGIYDNYIVKRQMLGLASIISTQLLLVDE
ILRAGRDTTR*
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mRNA from alignment at ScGOVlb_24228:482091..482723+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5160.t2 ID=Gvermi5160.t2|Name=Gvermi5160.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=633bp|location=Sequence derived from alignment at ScGOVlb_24228:482091..482723+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACGAATTACCATGGCATGTGGCGGAATTCCTGTCAATTCCGTCGA
GGGATTAACAATAGATGATCTTGGATTTGCAGGGGCTGTGTACGAAGAAG
TTCATGAGGACGACAAGTATACATTTGTTGAGGAAGTGAAGAATCCTTTC
AGTTGTACGGTGCTCATTCGCGGCCCCAATAAGCACACGATTACGCAAAT
GAAAGATGCTGTTCGTGATGGACTGCGTGCTGTCAAGAACACCATGGAAG
ATCAGTGTGTCCTTCCTGGGGCAGGTGCCTTTGAAATAGCTGCCCATGCA
CATTTGAAGAAATTTGCCAACAAAAGCATTACTGGCAAGACTAAGTTGGG
GGTGACAGCTTTTGCCGAAGCGTTATTGGTAATTCCAAAAACACTCGCAG
AAACTAGTGGACATGATGCACTTGATTGTATCATAAAACTGGAAGAAGAA
AACGCTAAAGGTCATTTCGCAGGACTAGACCTTGCCACAGGTGAGCCACT
TGATCCGAACGCTAGTGGAATTTACGACAATTACATCGTGAAACGTCAAA
TGTTGGGTTTGGCGTCCATCATAAGCACCCAACTTTTATTGGTCGACGAA
ATTTTGCGAGCCGGACGAGATACAACTCGTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24228:482091..482723+

>Gvermi5160.t2 ID=Gvermi5160.t2|Name=Gvermi5160.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=633bp|location=Sequence derived from alignment at ScGOVlb_24228:482091..482723+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACGAATTACCATGGCATGTGGCGGAATTCCTGTCAATTCCGTCGA
GGGATTAACAATAGATGATCTTGGATTTGCAGGGGCTGTGTACGAAGAAG
TTCATGAGGACGACAAGTATACATTTGTTGAGGAAGTGAAGAATCCTTTC
AGTTGTACGGTGCTCATTCGCGGCCCCAATAAGCACACGATTACGCAAAT
GAAAGATGCTGTTCGTGATGGACTGCGTGCTGTCAAGAACACCATGGAAG
ATCAGTGTGTCCTTCCTGGGGCAGGTGCCTTTGAAATAGCTGCCCATGCA
CATTTGAAGAAATTTGCCAACAAAAGCATTACTGGCAAGACTAAGTTGGG
GGTGACAGCTTTTGCCGAAGCGTTATTGGTAATTCCAAAAACACTCGCAG
AAACTAGTGGACATGATGCACTTGATTGTATCATAAAACTGGAAGAAGAA
AACGCTAAAGGTCATTTCGCAGGACTAGACCTTGCCACAGGTGAGCCACT
TGATCCGAACGCTAGTGGAATTTACGACAATTACATCGTGAAACGTCAAA
TGTTGGGTTTGGCGTCCATCATAAGCACCCAACTTTTATTGGTCGACGAA
ATTTTGCGAGCCGGACGAGATACAACTCGTTAA
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