Gvermi5137.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi5137.t1
Unique Name	Gvermi5137.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	442

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24228	contig	ScGOVlb_24228:361555..362880 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMG035CT
PFAMs	LRR_6,WPP
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02909,ko:K14319
KEGG Pathway	ko03010,ko03013,map03010,map03013
KEGG Module	M00178,M00427
Evalue	2.68e-55
EggNOG OGs	COG5238@1\|root,KOG1909@2759\|Eukaryota
Description	GTPase activator activity
COG category	AT
BRITE	br01610,ko00000,ko00001,ko00002,ko03011,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5137	Gvermi5137	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24228 361555..362880 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5137.t1.start1	Gvermi5137.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24228 361555..361557 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5137.t1.CDS1	Gvermi5137.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24228 361555..362880 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5137.t1.exon1	Gvermi5137.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24228 361555..362880 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5137.t1.stop1	Gvermi5137.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24228 362878..362880 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5137.t1	Gvermi5137.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24228 361555..362880 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24228:361555..362880+
coding sequence from alignment at ScGOVlb_24228:361555..362880+

mRNA sequence

>Gvermi5137.t1 ID=Gvermi5137.t1|Name=Gvermi5137.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=442bp
MTKFHLDHAKREALTTERAKQLLKGLDEGVLSVKLSGKSFGDGSAQVAAD
ALQKASPTLVRLDISDVIASRPEDEAKRALATICDGLSTCKQLELIDLSD
NALGAKGIRAVGGLLTSQEKLKELLFCNNGLAADAGDLIASALLETSPTA
LVKLHFHNNLLETAGSIALAPIVENSPALEDFRFSSLRLGREGAVRICKA
LQPRLGQTLRYLNLADNSFGEEGAQALAEAVSDAPALESLVVNDCLLEDD
GVRLVCDALGKGAPKLRVFNVAANEVSVDGAKAIAELLKTSDLRELIAED
NEFGSVGAVRLAKGIKGCSCLELLNVEGCEIGGRGALALAKAVGKVAGFK
LLQLDKNAIGEETVEEITQLLEDKLGSLEENDEEEEDEDDDEEEEEEEEE
EEEETAEEVGAKLPAKGTQNAGEKIASEVEDVAIQIKGLKL*

spliced messenger RNA

>Gvermi5137.t1 ID=Gvermi5137.t1|Name=Gvermi5137.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at ScGOVlb_24228:361555..362880+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAAGTTTCACCTGGACCATGCCAAGCGTGAAGCTCTCACCACTGA
GAGAGCAAAGCAATTGCTAAAGGGCCTTGACGAGGGCGTGCTATCCGTCA
AGCTCAGCGGAAAGAGTTTTGGCGATGGCTCTGCCCAGGTAGCTGCAGAC
GCACTGCAGAAAGCAAGCCCAACTCTTGTCCGCCTCGATATCTCTGATGT
GATCGCCTCTCGTCCCGAGGACGAAGCAAAGCGCGCGTTGGCCACGATAT
GCGATGGACTTTCCACCTGCAAACAGCTGGAACTAATTGATCTGTCGGAC
AATGCCTTGGGCGCAAAAGGTATTCGTGCCGTAGGCGGCTTGCTTACCAG
TCAAGAGAAACTAAAGGAGTTGCTCTTTTGTAACAATGGACTGGCGGCTG
ATGCGGGTGACCTTATTGCCTCTGCGCTTCTGGAAACATCACCCACTGCC
CTCGTCAAACTGCACTTTCACAACAATCTGCTGGAAACAGCTGGCTCAAT
CGCCCTGGCACCCATTGTGGAGAACAGTCCTGCGCTAGAAGATTTCCGGT
TTTCCTCCCTGCGACTCGGGAGAGAGGGCGCAGTCCGCATTTGCAAAGCA
TTACAACCACGCCTGGGGCAGACATTGCGATACCTGAATTTGGCAGACAA
CTCGTTTGGAGAGGAGGGAGCGCAAGCGCTGGCAGAAGCCGTGTCGGATG
CTCCAGCATTGGAGAGTTTGGTCGTGAATGACTGTCTGTTAGAAGATGAC
GGTGTCAGACTGGTGTGCGATGCTCTTGGAAAGGGTGCGCCCAAGCTGCG
TGTCTTCAACGTGGCTGCGAACGAAGTCTCCGTCGATGGAGCAAAGGCGA
TTGCAGAACTACTGAAAACGAGCGATTTACGCGAGCTTATTGCAGAAGAT
AATGAGTTTGGTAGCGTGGGTGCCGTGCGACTCGCGAAAGGGATCAAGGG
ATGTTCATGTCTAGAACTGCTTAATGTGGAAGGCTGTGAAATCGGCGGGA
GAGGTGCTCTGGCACTTGCAAAGGCAGTGGGCAAGGTCGCAGGGTTCAAA
CTGCTTCAACTCGACAAGAATGCAATAGGTGAGGAAACGGTTGAGGAAAT
CACACAACTTTTGGAAGACAAACTGGGTTCTCTTgaagaaaatgacgaag
aggaggaagatgaagatgatgatgaagaggaagaagaggaggaggaggag
gaggaagaggaaaccgcagaagaagtaggTGCCAAGCTCCCCGCGAAAGG
GACACAAAACGCAGGGGAGAAGATCGCGTCAGAGGTGGAAGACGTAGCGA
TACAAATCAAAGGACTTAAGCTTTGA

protein sequence of Gvermi5137.t1

>Gvermi5137.t1 ID=Gvermi5137.t1|Name=Gvermi5137.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=442bp
MTKFHLDHAKREALTTERAKQLLKGLDEGVLSVKLSGKSFGDGSAQVAAD
ALQKASPTLVRLDISDVIASRPEDEAKRALATICDGLSTCKQLELIDLSD
NALGAKGIRAVGGLLTSQEKLKELLFCNNGLAADAGDLIASALLETSPTA
LVKLHFHNNLLETAGSIALAPIVENSPALEDFRFSSLRLGREGAVRICKA
LQPRLGQTLRYLNLADNSFGEEGAQALAEAVSDAPALESLVVNDCLLEDD
GVRLVCDALGKGAPKLRVFNVAANEVSVDGAKAIAELLKTSDLRELIAED
NEFGSVGAVRLAKGIKGCSCLELLNVEGCEIGGRGALALAKAVGKVAGFK
LLQLDKNAIGEETVEEITQLLEDKLGSLEENDEEEEDEDDDEEEEEEEEE
EEEETAEEVGAKLPAKGTQNAGEKIASEVEDVAIQIKGLKL*

mRNA from alignment at ScGOVlb_24228:361555..362880+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi5137.t1 ID=Gvermi5137.t1|Name=Gvermi5137.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at ScGOVlb_24228:361555..362880+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTAAGTTTCACCTGGACCATGCCAAGCGTGAAGCTCTCACCACTGA
GAGAGCAAAGCAATTGCTAAAGGGCCTTGACGAGGGCGTGCTATCCGTCA
AGCTCAGCGGAAAGAGTTTTGGCGATGGCTCTGCCCAGGTAGCTGCAGAC
GCACTGCAGAAAGCAAGCCCAACTCTTGTCCGCCTCGATATCTCTGATGT
GATCGCCTCTCGTCCCGAGGACGAAGCAAAGCGCGCGTTGGCCACGATAT
GCGATGGACTTTCCACCTGCAAACAGCTGGAACTAATTGATCTGTCGGAC
AATGCCTTGGGCGCAAAAGGTATTCGTGCCGTAGGCGGCTTGCTTACCAG
TCAAGAGAAACTAAAGGAGTTGCTCTTTTGTAACAATGGACTGGCGGCTG
ATGCGGGTGACCTTATTGCCTCTGCGCTTCTGGAAACATCACCCACTGCC
CTCGTCAAACTGCACTTTCACAACAATCTGCTGGAAACAGCTGGCTCAAT
CGCCCTGGCACCCATTGTGGAGAACAGTCCTGCGCTAGAAGATTTCCGGT
TTTCCTCCCTGCGACTCGGGAGAGAGGGCGCAGTCCGCATTTGCAAAGCA
TTACAACCACGCCTGGGGCAGACATTGCGATACCTGAATTTGGCAGACAA
CTCGTTTGGAGAGGAGGGAGCGCAAGCGCTGGCAGAAGCCGTGTCGGATG
CTCCAGCATTGGAGAGTTTGGTCGTGAATGACTGTCTGTTAGAAGATGAC
GGTGTCAGACTGGTGTGCGATGCTCTTGGAAAGGGTGCGCCCAAGCTGCG
TGTCTTCAACGTGGCTGCGAACGAAGTCTCCGTCGATGGAGCAAAGGCGA
TTGCAGAACTACTGAAAACGAGCGATTTACGCGAGCTTATTGCAGAAGAT
AATGAGTTTGGTAGCGTGGGTGCCGTGCGACTCGCGAAAGGGATCAAGGG
ATGTTCATGTCTAGAACTGCTTAATGTGGAAGGCTGTGAAATCGGCGGGA
GAGGTGCTCTGGCACTTGCAAAGGCAGTGGGCAAGGTCGCAGGGTTCAAA
CTGCTTCAACTCGACAAGAATGCAATAGGTGAGGAAACGGTTGAGGAAAT
CACACAACTTTTGGAAGACAAACTGGGTTCTCTTgaagaaaatgacgaag
aggaggaagatgaagatgatgatgaagaggaagaagaggaggaggaggag
gaggaagaggaaaccgcagaagaagtaggTGCCAAGCTCCCCGCGAAAGG
GACACAAAACGCAGGGGAGAAGATCGCGTCAGAGGTGGAAGACGTAGCGA
TACAAATCAAAGGACTTAAGCTTTGA

Coding sequence (CDS) from alignment at ScGOVlb_24228:361555..362880+

>Gvermi5137.t1 ID=Gvermi5137.t1|Name=Gvermi5137.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1326bp|location=Sequence derived from alignment at ScGOVlb_24228:361555..362880+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTAAGTTTCACCTGGACCATGCCAAGCGTGAAGCTCTCACCACTGA
GAGAGCAAAGCAATTGCTAAAGGGCCTTGACGAGGGCGTGCTATCCGTCA
AGCTCAGCGGAAAGAGTTTTGGCGATGGCTCTGCCCAGGTAGCTGCAGAC
GCACTGCAGAAAGCAAGCCCAACTCTTGTCCGCCTCGATATCTCTGATGT
GATCGCCTCTCGTCCCGAGGACGAAGCAAAGCGCGCGTTGGCCACGATAT
GCGATGGACTTTCCACCTGCAAACAGCTGGAACTAATTGATCTGTCGGAC
AATGCCTTGGGCGCAAAAGGTATTCGTGCCGTAGGCGGCTTGCTTACCAG
TCAAGAGAAACTAAAGGAGTTGCTCTTTTGTAACAATGGACTGGCGGCTG
ATGCGGGTGACCTTATTGCCTCTGCGCTTCTGGAAACATCACCCACTGCC
CTCGTCAAACTGCACTTTCACAACAATCTGCTGGAAACAGCTGGCTCAAT
CGCCCTGGCACCCATTGTGGAGAACAGTCCTGCGCTAGAAGATTTCCGGT
TTTCCTCCCTGCGACTCGGGAGAGAGGGCGCAGTCCGCATTTGCAAAGCA
TTACAACCACGCCTGGGGCAGACATTGCGATACCTGAATTTGGCAGACAA
CTCGTTTGGAGAGGAGGGAGCGCAAGCGCTGGCAGAAGCCGTGTCGGATG
CTCCAGCATTGGAGAGTTTGGTCGTGAATGACTGTCTGTTAGAAGATGAC
GGTGTCAGACTGGTGTGCGATGCTCTTGGAAAGGGTGCGCCCAAGCTGCG
TGTCTTCAACGTGGCTGCGAACGAAGTCTCCGTCGATGGAGCAAAGGCGA
TTGCAGAACTACTGAAAACGAGCGATTTACGCGAGCTTATTGCAGAAGAT
AATGAGTTTGGTAGCGTGGGTGCCGTGCGACTCGCGAAAGGGATCAAGGG
ATGTTCATGTCTAGAACTGCTTAATGTGGAAGGCTGTGAAATCGGCGGGA
GAGGTGCTCTGGCACTTGCAAAGGCAGTGGGCAAGGTCGCAGGGTTCAAA
CTGCTTCAACTCGACAAGAATGCAATAGGTGAGGAAACGGTTGAGGAAAT
CACACAACTTTTGGAAGACAAACTGGGTTCTCTTgaagaaaatgacgaag
aggaggaagatgaagatgatgatgaagaggaagaagaggaggaggaggag
gaggaagaggaaaccgcagaagaagtaggTGCCAAGCTCCCCGCGAAAGG
GACACAAAACGCAGGGGAGAAGATCGCGTCAGAGGTGGAAGACGTAGCGA
TACAAATCAAAGGACTTAAGCTTTGA