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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 45157.CMI157CT |
| Preferred name | YME1 |
| PFAMs | AAA,Peptidase_M41 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K08955,ko:K17796 |
| KEGG TC | 3.A.8.1 |
| KEGG Pathway | ko04139,map04139 |
| GOs | GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0006457,GO:0006508,GO:0006515,GO:0006605,GO:0006626,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0009507,GO:0009526,GO:0009536,GO:0009888,GO:0009941,GO:0009987,GO:0010073,GO:0010467,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017111,GO:0019538,GO:0019866,GO:0030150,GO:0030163,GO:0031090,GO:0031942,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035694,GO:0042623,GO:0042802,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046907,GO:0048507,GO:0048856,GO:0051179,GO:0051234,GO:0051603,GO:0051604,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070011,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1990542 |
| Evalue | 1.26e-237 |
| EggNOG OGs | COG0465@1|root,KOG0734@2759|Eukaryota |
| Description | ATP-dependent peptidase activity |
| COG category | O |
| BRITE | ko00000,ko00001,ko01000,ko01002,ko02000,ko03029 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi5098.t1 ID=Gvermi5098.t1|Name=Gvermi5098.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=733bp MASSASIALRTHLRNPRPKRLYNCLNTDVARRLRSRNAQQRRSWTLLPNA QERRLQRLLDEANNRAHDPEIQAVYLRALGKTKPQEVVRRVELGKYAAGD NVLREYVKALVKTGAIDRVNLPKLIDSVASTNLRASAHSVTASSTLSGLS GTAASAAPLSGNAAKSALSGLTSGVTAPWQASGAAAAAAAAAAAGTATAP LHVTLAEPSMLSQLWRAVRVLGTTFLVLGFLGVMMEERGMSRGMGMNLDK VPEPESGDATTFEDVKGCDEAKAELEEIVHFLRQPYAFTRLGGKLPKGIL LMGPPGTGKTLLARAIAGEAKRPFFYASGSEFEEMFVGVGAKRVRELFAA AKQHAPCIIFIDEIDAIGGKRNPKDQRFLTMTLNQFLVEMDGFQSSEGII VIGATNFPESLDKALIRPGRFDRHVVVPIPDIRGRVQILDAHTRKIPLEE DVDLEIIARGTPGFSGAELANLVNMAALKAAVEEFAAVTMSHLEYAKDKI IMGAERKSAAISEDTRRMTAYHEGGHALCCVYTKDAFPVHKATIMPRGQA LGLVAQLPEKDMTSMSKAQMIAKIDVCMGGRAAEEMIFGEERVSSGASSD FEQATQMAEAMVTRYGMSEKLGMVVYDKERESGETRALIEGEVKRILDES YARVSKLLRNKEKELHRLAEALLKFESLTGEQVMLAVKGDLSEAMMRTVG SGRVQRTAEEHRGAALLPKVDARGAVGGDGSV* back to topspliced messenger RNA >Gvermi5098.t1 ID=Gvermi5098.t1|Name=Gvermi5098.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2199bp|location=Sequence derived from alignment at ScGOVlb_24228:226841..229039+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGTCCTCGGCCTCGATTGCGCTGCGAACACATCTTCGAAACCCACG GCCGAAACGTCTTTACAACTGCCTGAACACCGATGTTGCGCGACGCTTAC GTTCCAGAAATGCTCAGCAACGAAGGTCATGGACTTTGCTCCCAAACGCA CAGGAGCGACGTCTGCAGCGCTTGTTGGATGAAGCCAACAATCGTGCCCA CGACCCTGAGATTCAAGCGGTTTACCTCCGCGCATTGGGAAAAACGAAGC CGCAAGAAGTTGTTCGTCGTGTGGAGTTGGGCAAGTATGCTGCAGGGGAC AACGTCTTACGAGAGTATGTTAAGGCTCTGGTAAAAACTGGTGCTATCGA CAGAGTGAATCTTCCAAAGCTGATTGATTCTGTTGCTAGCACCAACTTGC GCGCGAGTGCTCATTCAGTCACAGCGTCTTCCACTTTGAGTGGGCTGAGC GGCACAGCAGCGTCAGCAGCGCCTTTGAGTGGCAATGCAGCGAAAAGCGC TCTATCTGGTCTTACTTCAGGGGTAACGGCCCCATGGCAGGCAAGTGGag ctgcagctgctgcagccgctgcagccgcagcaggcacagccaccgcaccc CTACATGTGACACTGGCAGAGCCATCAATGCTCTCGCAACTTTGGCGGGC TGTTCGGGTTCTGGGCACGACATTCTTAGTGCTTGGATTTCTGGGCGTGA TGATGGAAGAGCGTGGAATGTCGCGTGGAATGGGGATGAACCTAGACAAA GTGCCCGAACCAGAGTCAGGGGATGCGACAACGTTCGAGGACGTTAAGGG CTGTGACGAGGCCAAGGCAGAACTGGAAGAGATTGTTCACTTTCTGCGTC AGCCGTATGCGTTCACAAGATTGGGAGGCAAACTGCCGAAGGGCATCCTT TTAATGGGCCCGCCCGGTACTGGGAAGACTCTACTTGCACGAGCCATCGC AGGCGAAGCCAAGAGGCCCTTCTTCTACGCAAGTGGATCAGAATTCGAGG AGATGTTTGTAGGAGTTGGTGCGAAACGGGTGAGAGAGTTGTTTGCTGCC GCAAAACAACACGCACCTTGCATTATTTTCATAGACGAAATCGACGCGAT AGGGGGGAAAAGAAATCCAAAAGACCAACGCTTTCTAACAATGACTCTGA ACCAATTTTTAGTAGAGATGGACGGCTTTCAGTCAAGTGAAGGAATTATT GTGATTGGGGCGACAAACTTTCCAGAGAGCCTGGACAAGGCATTAATCAG ACCCGGGCGCTTTGATAGACACGTTGTGGTGCCTATTCCTGATATACGCG GTCGCGTTCAAATCCTTGACGCGCACACGAGGAAGATACCGTTGGAAGAG GATGTGGACTTGGAAATCATTGCACGGGGAACGCCTGGATTCTCTGGGGC AGAATTGGCAAACTTGGTGAACATGGCGGCCTTGAAGGCGGCAGTAGAGG AGTTTGCCGCTGTAACGATGAGTCATCTTGAATACGCCAAAGACAAAATC ATTATGGGTGCGGAGAGAAAATCGGCTGCAATCAGCGAGGACACAAGACG CATGACAGCGTATCATGAGGGCGGGCACGCGTTGTGCTGTGTGTACACGA AGGACGCATTCCCAGTACACAAGGCGACTATCATGCCCAGGGGACAGGCA CTGGGTCTGGTTGCTCAACTCCCAGAAAAGGACATGACGTCAATGTCGAA AGCGCAAATGATAGCGAAAATCGACGTGTGTATGGGTGGGCGTGCTGCGG AAGAGATGATTTTTGGCGAGGAGAGGGTTTCAAGCGGCGCATCTTCGGAC TTTGAACAGGCAACGCAAATGGCAGAGGCGATGGTAACACGATACGGAAT GTCAGAGAAACTGGGGATGGTAGTGTACGACAAAGAGCGAGAAAGCGGTG AGACGCGAGCGTTGATTGAGGGGGAAGTGAAGCGGATTTTGGACGAATCG TATGCAAGGGTAAGCAAGCTGCTACGGAATAAGGAAAAGGAACTGCATCG ACTGGCGGAAGCGTTGCTGAAGTTTGAGAGTTTGACCGGAGAGCAGGTGA TGCTAGCGGTGAAGGGGGATTTGTCTGAAGCGATGATGAGAACGGTAGGG AGCGGACGGGTGCAGCGGACGGCAGAGGAGCATCGCGGCGCGGCGCTCCT GCCGAAAGTGGATGCGCGGGGAGCCGTAGGGGGGGATGGAAGTGTGTGA back to topprotein sequence of Gvermi5098.t1 >Gvermi5098.t1 ID=Gvermi5098.t1|Name=Gvermi5098.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=733bp
MASSASIALRTHLRNPRPKRLYNCLNTDVARRLRSRNAQQRRSWTLLPNA QERRLQRLLDEANNRAHDPEIQAVYLRALGKTKPQEVVRRVELGKYAAGD NVLREYVKALVKTGAIDRVNLPKLIDSVASTNLRASAHSVTASSTLSGLS GTAASAAPLSGNAAKSALSGLTSGVTAPWQASGAAAAAAAAAAAGTATAP LHVTLAEPSMLSQLWRAVRVLGTTFLVLGFLGVMMEERGMSRGMGMNLDK VPEPESGDATTFEDVKGCDEAKAELEEIVHFLRQPYAFTRLGGKLPKGIL LMGPPGTGKTLLARAIAGEAKRPFFYASGSEFEEMFVGVGAKRVRELFAA AKQHAPCIIFIDEIDAIGGKRNPKDQRFLTMTLNQFLVEMDGFQSSEGII VIGATNFPESLDKALIRPGRFDRHVVVPIPDIRGRVQILDAHTRKIPLEE DVDLEIIARGTPGFSGAELANLVNMAALKAAVEEFAAVTMSHLEYAKDKI IMGAERKSAAISEDTRRMTAYHEGGHALCCVYTKDAFPVHKATIMPRGQA LGLVAQLPEKDMTSMSKAQMIAKIDVCMGGRAAEEMIFGEERVSSGASSD FEQATQMAEAMVTRYGMSEKLGMVVYDKERESGETRALIEGEVKRILDES YARVSKLLRNKEKELHRLAEALLKFESLTGEQVMLAVKGDLSEAMMRTVG SGRVQRTAEEHRGAALLPKVDARGAVGGDGSV* back to topmRNA from alignment at ScGOVlb_24228:226841..229039+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi5098.t1 ID=Gvermi5098.t1|Name=Gvermi5098.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2199bp|location=Sequence derived from alignment at ScGOVlb_24228:226841..229039+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGCGTCCTCGGCCTCGATTGCGCTGCGAACACATCTTCGAAACCCACG
GCCGAAACGTCTTTACAACTGCCTGAACACCGATGTTGCGCGACGCTTAC
GTTCCAGAAATGCTCAGCAACGAAGGTCATGGACTTTGCTCCCAAACGCA
CAGGAGCGACGTCTGCAGCGCTTGTTGGATGAAGCCAACAATCGTGCCCA
CGACCCTGAGATTCAAGCGGTTTACCTCCGCGCATTGGGAAAAACGAAGC
CGCAAGAAGTTGTTCGTCGTGTGGAGTTGGGCAAGTATGCTGCAGGGGAC
AACGTCTTACGAGAGTATGTTAAGGCTCTGGTAAAAACTGGTGCTATCGA
CAGAGTGAATCTTCCAAAGCTGATTGATTCTGTTGCTAGCACCAACTTGC
GCGCGAGTGCTCATTCAGTCACAGCGTCTTCCACTTTGAGTGGGCTGAGC
GGCACAGCAGCGTCAGCAGCGCCTTTGAGTGGCAATGCAGCGAAAAGCGC
TCTATCTGGTCTTACTTCAGGGGTAACGGCCCCATGGCAGGCAAGTGGag
ctgcagctgctgcagccgctgcagccgcagcaggcacagccaccgcaccc
CTACATGTGACACTGGCAGAGCCATCAATGCTCTCGCAACTTTGGCGGGC
TGTTCGGGTTCTGGGCACGACATTCTTAGTGCTTGGATTTCTGGGCGTGA
TGATGGAAGAGCGTGGAATGTCGCGTGGAATGGGGATGAACCTAGACAAA
GTGCCCGAACCAGAGTCAGGGGATGCGACAACGTTCGAGGACGTTAAGGG
CTGTGACGAGGCCAAGGCAGAACTGGAAGAGATTGTTCACTTTCTGCGTC
AGCCGTATGCGTTCACAAGATTGGGAGGCAAACTGCCGAAGGGCATCCTT
TTAATGGGCCCGCCCGGTACTGGGAAGACTCTACTTGCACGAGCCATCGC
AGGCGAAGCCAAGAGGCCCTTCTTCTACGCAAGTGGATCAGAATTCGAGG
AGATGTTTGTAGGAGTTGGTGCGAAACGGGTGAGAGAGTTGTTTGCTGCC
GCAAAACAACACGCACCTTGCATTATTTTCATAGACGAAATCGACGCGAT
AGGGGGGAAAAGAAATCCAAAAGACCAACGCTTTCTAACAATGACTCTGA
ACCAATTTTTAGTAGAGATGGACGGCTTTCAGTCAAGTGAAGGAATTATT
GTGATTGGGGCGACAAACTTTCCAGAGAGCCTGGACAAGGCATTAATCAG
ACCCGGGCGCTTTGATAGACACGTTGTGGTGCCTATTCCTGATATACGCG
GTCGCGTTCAAATCCTTGACGCGCACACGAGGAAGATACCGTTGGAAGAG
GATGTGGACTTGGAAATCATTGCACGGGGAACGCCTGGATTCTCTGGGGC
AGAATTGGCAAACTTGGTGAACATGGCGGCCTTGAAGGCGGCAGTAGAGG
AGTTTGCCGCTGTAACGATGAGTCATCTTGAATACGCCAAAGACAAAATC
ATTATGGGTGCGGAGAGAAAATCGGCTGCAATCAGCGAGGACACAAGACG
CATGACAGCGTATCATGAGGGCGGGCACGCGTTGTGCTGTGTGTACACGA
AGGACGCATTCCCAGTACACAAGGCGACTATCATGCCCAGGGGACAGGCA
CTGGGTCTGGTTGCTCAACTCCCAGAAAAGGACATGACGTCAATGTCGAA
AGCGCAAATGATAGCGAAAATCGACGTGTGTATGGGTGGGCGTGCTGCGG
AAGAGATGATTTTTGGCGAGGAGAGGGTTTCAAGCGGCGCATCTTCGGAC
TTTGAACAGGCAACGCAAATGGCAGAGGCGATGGTAACACGATACGGAAT
GTCAGAGAAACTGGGGATGGTAGTGTACGACAAAGAGCGAGAAAGCGGTG
AGACGCGAGCGTTGATTGAGGGGGAAGTGAAGCGGATTTTGGACGAATCG
TATGCAAGGGTAAGCAAGCTGCTACGGAATAAGGAAAAGGAACTGCATCG
ACTGGCGGAAGCGTTGCTGAAGTTTGAGAGTTTGACCGGAGAGCAGGTGA
TGCTAGCGGTGAAGGGGGATTTGTCTGAAGCGATGATGAGAACGGTAGGG
AGCGGACGGGTGCAGCGGACGGCAGAGGAGCATCGCGGCGCGGCGCTCCT
GCCGAAAGTGGATGCGCGGGGAGCCGTAGGGGGGGATGGAAGTGTGTGA back to topCoding sequence (CDS) from alignment at ScGOVlb_24228:226841..229039+ >Gvermi5098.t1 ID=Gvermi5098.t1|Name=Gvermi5098.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2199bp|location=Sequence derived from alignment at ScGOVlb_24228:226841..229039+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGGCGTCCTCGGCCTCGATTGCGCTGCGAACACATCTTCGAAACCCACG GCCGAAACGTCTTTACAACTGCCTGAACACCGATGTTGCGCGACGCTTAC GTTCCAGAAATGCTCAGCAACGAAGGTCATGGACTTTGCTCCCAAACGCA CAGGAGCGACGTCTGCAGCGCTTGTTGGATGAAGCCAACAATCGTGCCCA CGACCCTGAGATTCAAGCGGTTTACCTCCGCGCATTGGGAAAAACGAAGC CGCAAGAAGTTGTTCGTCGTGTGGAGTTGGGCAAGTATGCTGCAGGGGAC AACGTCTTACGAGAGTATGTTAAGGCTCTGGTAAAAACTGGTGCTATCGA CAGAGTGAATCTTCCAAAGCTGATTGATTCTGTTGCTAGCACCAACTTGC GCGCGAGTGCTCATTCAGTCACAGCGTCTTCCACTTTGAGTGGGCTGAGC GGCACAGCAGCGTCAGCAGCGCCTTTGAGTGGCAATGCAGCGAAAAGCGC TCTATCTGGTCTTACTTCAGGGGTAACGGCCCCATGGCAGGCAAGTGGag ctgcagctgctgcagccgctgcagccgcagcaggcacagccaccgcaccc CTACATGTGACACTGGCAGAGCCATCAATGCTCTCGCAACTTTGGCGGGC TGTTCGGGTTCTGGGCACGACATTCTTAGTGCTTGGATTTCTGGGCGTGA TGATGGAAGAGCGTGGAATGTCGCGTGGAATGGGGATGAACCTAGACAAA GTGCCCGAACCAGAGTCAGGGGATGCGACAACGTTCGAGGACGTTAAGGG CTGTGACGAGGCCAAGGCAGAACTGGAAGAGATTGTTCACTTTCTGCGTC AGCCGTATGCGTTCACAAGATTGGGAGGCAAACTGCCGAAGGGCATCCTT TTAATGGGCCCGCCCGGTACTGGGAAGACTCTACTTGCACGAGCCATCGC AGGCGAAGCCAAGAGGCCCTTCTTCTACGCAAGTGGATCAGAATTCGAGG AGATGTTTGTAGGAGTTGGTGCGAAACGGGTGAGAGAGTTGTTTGCTGCC GCAAAACAACACGCACCTTGCATTATTTTCATAGACGAAATCGACGCGAT AGGGGGGAAAAGAAATCCAAAAGACCAACGCTTTCTAACAATGACTCTGA ACCAATTTTTAGTAGAGATGGACGGCTTTCAGTCAAGTGAAGGAATTATT GTGATTGGGGCGACAAACTTTCCAGAGAGCCTGGACAAGGCATTAATCAG ACCCGGGCGCTTTGATAGACACGTTGTGGTGCCTATTCCTGATATACGCG GTCGCGTTCAAATCCTTGACGCGCACACGAGGAAGATACCGTTGGAAGAG GATGTGGACTTGGAAATCATTGCACGGGGAACGCCTGGATTCTCTGGGGC AGAATTGGCAAACTTGGTGAACATGGCGGCCTTGAAGGCGGCAGTAGAGG AGTTTGCCGCTGTAACGATGAGTCATCTTGAATACGCCAAAGACAAAATC ATTATGGGTGCGGAGAGAAAATCGGCTGCAATCAGCGAGGACACAAGACG CATGACAGCGTATCATGAGGGCGGGCACGCGTTGTGCTGTGTGTACACGA AGGACGCATTCCCAGTACACAAGGCGACTATCATGCCCAGGGGACAGGCA CTGGGTCTGGTTGCTCAACTCCCAGAAAAGGACATGACGTCAATGTCGAA AGCGCAAATGATAGCGAAAATCGACGTGTGTATGGGTGGGCGTGCTGCGG AAGAGATGATTTTTGGCGAGGAGAGGGTTTCAAGCGGCGCATCTTCGGAC TTTGAACAGGCAACGCAAATGGCAGAGGCGATGGTAACACGATACGGAAT GTCAGAGAAACTGGGGATGGTAGTGTACGACAAAGAGCGAGAAAGCGGTG AGACGCGAGCGTTGATTGAGGGGGAAGTGAAGCGGATTTTGGACGAATCG TATGCAAGGGTAAGCAAGCTGCTACGGAATAAGGAAAAGGAACTGCATCG ACTGGCGGAAGCGTTGCTGAAGTTTGAGAGTTTGACCGGAGAGCAGGTGA TGCTAGCGGTGAAGGGGGATTTGTCTGAAGCGATGATGAGAACGGTAGGG AGCGGACGGGTGCAGCGGACGGCAGAGGAGCATCGCGGCGCGGCGCTCCT GCCGAAAGTGGATGCGCGGGGAGCCGTAGGGGGGGATGGAAGTGTGTGA back to top
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