Gvermi4240.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi4240.t1
Unique NameGvermi4240.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length445
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:873398..874732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28985.XP_451947.1
Preferred nameALG1
PFAMsGlyco_trans_1_4,Glyco_trans_4_4,Glyco_transf_4,Glycos_transf_1
Max annot lvl4751|Fungi
KEGG koko:K03842
KEGG ReactionR05972
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00055
GOsGO:0000030,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016740,GO:0016757,GO:0016758,GO:0019187,GO:0019538,GO:0034645,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0070085,GO:0071704,GO:0097502,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue7.85e-48
EggNOG OGsCOG0438@1|root,KOG2941@2759|Eukaryota,38CDI@33154|Opisthokonta,3NTXV@4751|Fungi,3QKMK@4890|Ascomycota,3RSCW@4891|Saccharomycetes,3RZSN@4893|Saccharomycetaceae
EC2.4.1.142
Descriptionto Saccharomyces cerevisiae ALG1 (YBR110W)
COG categoryO
CAZyGT33
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4240Gvermi4240Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_147 873398..874732 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4240.t1.stop1Gvermi4240.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_147 873398..873400 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4240.t1.CDS1Gvermi4240.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 873398..874732 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4240.t1.exon1Gvermi4240.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 873398..874732 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4240.t1.start1Gvermi4240.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_147 874730..874732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4240.t1Gvermi4240.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_147 873398..874732 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi4240.t1 ID=Gvermi4240.t1|Name=Gvermi4240.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=445bp
MLFIVATASALCVALLLLTLLVLFFIRYYHQQRVKTNPLPPAILLVSQSP
ANHSPRVIAHLKACLHFSEQDAVIFLAEPPNTISDDRLSFHPLPLYPPLP
RRNVFFLVKKAIYLIFSQASCLSTIACLPFDVHHIILATPPALPLLPLVI
LLRPFFFPDSVVIVDIHNLAYTLSAQNNTNRYFLKLAQLLELRSYRLTHD
TWTVSSALARFLRTMGIRTQVLRDLPSDVFTRFRNKLLSTDEKNSLIQRV
RSHATCFGPKSLNISVPLIVSSTSWTPDEDLSILRQSILQLDRCEVTLRV
VITGKGPLRSAFEKDMRPLKLQYVQVWLAWLPFSDYAALLSVATLGVSLH
ASSSSLDLPMKVVDMLGTGLPVLALRYPCIHELVQDGRNGILFEDSENLT
ESIRRVLRDEQLMNSLREGAADSFHEEWLTQWEIVAIPSFSRGT*
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spliced messenger RNA

>Gvermi4240.t1 ID=Gvermi4240.t1|Name=Gvermi4240.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at ScGOVlb_147:873398..874732- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTATTCATCGTAGCAACAGCATCCGCTTTGTGTGTTGCATTGCTTCT
CCTCACGCTCCTTGTCCTTTTCTTTATCCGATATTATCATCAACAACGCG
TCAAAACAAACCCTCTTCCTCCTGCCATACTGCTGGTTTCTCAATCACCT
GCGAATCACTCTCCGCGCGTCATCGCTCACCTCAAAGCCTGCTTGCACTT
TTCAGAACAAGATGCCGTAATCTTCCTCGCAGAACCTCCAAACACCATAT
CGGATGACCGACTTTCTTTCCATCCCTTGCCGCTGTATCCGCCGCTTCCT
AGAAGGAATGTGTTTTTCTTAGTCAAGAAGGCAATATACTTAATTTTCAG
TCAAGCTTCGTGTTTAAGCACGATAGCATGTCTTCCATTTGATGTGCATC
ATATCATTCTGGCAACCCCTCCAGCTCTTCCTCTTCTACCACTCGTAATT
CTGTTACGGCCATTCTTTTTTCCGGACTCAGTGGTCATTGTTGATATTCA
TAATCTTGCATACACACTTTCTGCCCAGAATAACACAAATCGCTACTTTC
TCAAGCTTGCGCAGCTGCTCGAATTGCGTTCTTACCGCTTGACACATGAC
ACATGGACCGTGTCTTCCGCTCTCGCACGATTCCTACGCACAATGGGTAT
TAGAACACAAGTGCTTCGCGATCTTCCTTCGGACGTGTTCACCAGGTTTC
GAAATAAACTTCTTTCAACTGATGAGAAGAACAGCCTGATACAGCGCGTT
CGAAGCCATGCTACATGTTTCGGGCCAAAATCGCTGAACATCTCAGTACC
TCTGATAGTCTCTAGCACGAGTTGGACTCCTGACGAGGATTTATCTATTT
TACGACAATCTATTCTCCAACTGGATCGATGTGAAGTAACTCTTCGGGTT
GTAATAACGGGAAAAGGTCCGTTGCGGAGCGCCTTCGAAAAAGATATGCG
ACCGCTAAAACTGCAATACGTACAAGTATGGCTTGCCTGGTTACCATTTT
CTGATTATGCCGCACTACTTTCCGTTGCGACGCTTGGTGTCTCCTTGCAT
GCTAGCTCATCCTCCCTAGACTTACCGATGAAAGTTGTGGATATGCTGGG
CACCGGGCTTCCGGTTTTAGCGTTGCGATACCCATGTATTCATGAATTGG
TTCAAGATGGTCGCAACGGCATACTGTTCGAGGACTCTGAGAATCTCACG
GAGAGCATCAGAAGAGTTTTACGCGACGAGCAGCTTATGAACAGCTTGCG
GGAAGGAGCTGCCGACTCTTTCCATGAAGAATGGTTGACACAATGGGAGA
TTGTTGCAATACCGTCATTTTCGCGCGGAACATGA
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protein sequence of Gvermi4240.t1

>Gvermi4240.t1 ID=Gvermi4240.t1|Name=Gvermi4240.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=445bp
MLFIVATASALCVALLLLTLLVLFFIRYYHQQRVKTNPLPPAILLVSQSP
ANHSPRVIAHLKACLHFSEQDAVIFLAEPPNTISDDRLSFHPLPLYPPLP
RRNVFFLVKKAIYLIFSQASCLSTIACLPFDVHHIILATPPALPLLPLVI
LLRPFFFPDSVVIVDIHNLAYTLSAQNNTNRYFLKLAQLLELRSYRLTHD
TWTVSSALARFLRTMGIRTQVLRDLPSDVFTRFRNKLLSTDEKNSLIQRV
RSHATCFGPKSLNISVPLIVSSTSWTPDEDLSILRQSILQLDRCEVTLRV
VITGKGPLRSAFEKDMRPLKLQYVQVWLAWLPFSDYAALLSVATLGVSLH
ASSSSLDLPMKVVDMLGTGLPVLALRYPCIHELVQDGRNGILFEDSENLT
ESIRRVLRDEQLMNSLREGAADSFHEEWLTQWEIVAIPSFSRGT*
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mRNA from alignment at ScGOVlb_147:873398..874732-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi4240.t1 ID=Gvermi4240.t1|Name=Gvermi4240.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at ScGOVlb_147:873398..874732- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTATTCATCGTAGCAACAGCATCCGCTTTGTGTGTTGCATTGCTTCT
CCTCACGCTCCTTGTCCTTTTCTTTATCCGATATTATCATCAACAACGCG
TCAAAACAAACCCTCTTCCTCCTGCCATACTGCTGGTTTCTCAATCACCT
GCGAATCACTCTCCGCGCGTCATCGCTCACCTCAAAGCCTGCTTGCACTT
TTCAGAACAAGATGCCGTAATCTTCCTCGCAGAACCTCCAAACACCATAT
CGGATGACCGACTTTCTTTCCATCCCTTGCCGCTGTATCCGCCGCTTCCT
AGAAGGAATGTGTTTTTCTTAGTCAAGAAGGCAATATACTTAATTTTCAG
TCAAGCTTCGTGTTTAAGCACGATAGCATGTCTTCCATTTGATGTGCATC
ATATCATTCTGGCAACCCCTCCAGCTCTTCCTCTTCTACCACTCGTAATT
CTGTTACGGCCATTCTTTTTTCCGGACTCAGTGGTCATTGTTGATATTCA
TAATCTTGCATACACACTTTCTGCCCAGAATAACACAAATCGCTACTTTC
TCAAGCTTGCGCAGCTGCTCGAATTGCGTTCTTACCGCTTGACACATGAC
ACATGGACCGTGTCTTCCGCTCTCGCACGATTCCTACGCACAATGGGTAT
TAGAACACAAGTGCTTCGCGATCTTCCTTCGGACGTGTTCACCAGGTTTC
GAAATAAACTTCTTTCAACTGATGAGAAGAACAGCCTGATACAGCGCGTT
CGAAGCCATGCTACATGTTTCGGGCCAAAATCGCTGAACATCTCAGTACC
TCTGATAGTCTCTAGCACGAGTTGGACTCCTGACGAGGATTTATCTATTT
TACGACAATCTATTCTCCAACTGGATCGATGTGAAGTAACTCTTCGGGTT
GTAATAACGGGAAAAGGTCCGTTGCGGAGCGCCTTCGAAAAAGATATGCG
ACCGCTAAAACTGCAATACGTACAAGTATGGCTTGCCTGGTTACCATTTT
CTGATTATGCCGCACTACTTTCCGTTGCGACGCTTGGTGTCTCCTTGCAT
GCTAGCTCATCCTCCCTAGACTTACCGATGAAAGTTGTGGATATGCTGGG
CACCGGGCTTCCGGTTTTAGCGTTGCGATACCCATGTATTCATGAATTGG
TTCAAGATGGTCGCAACGGCATACTGTTCGAGGACTCTGAGAATCTCACG
GAGAGCATCAGAAGAGTTTTACGCGACGAGCAGCTTATGAACAGCTTGCG
GGAAGGAGCTGCCGACTCTTTCCATGAAGAATGGTTGACACAATGGGAGA
TTGTTGCAATACCGTCATTTTCGCGCGGAACATGA
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Coding sequence (CDS) from alignment at ScGOVlb_147:873398..874732-

>Gvermi4240.t1 ID=Gvermi4240.t1|Name=Gvermi4240.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1335bp|location=Sequence derived from alignment at ScGOVlb_147:873398..874732- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTATTCATCGTAGCAACAGCATCCGCTTTGTGTGTTGCATTGCTTCT
CCTCACGCTCCTTGTCCTTTTCTTTATCCGATATTATCATCAACAACGCG
TCAAAACAAACCCTCTTCCTCCTGCCATACTGCTGGTTTCTCAATCACCT
GCGAATCACTCTCCGCGCGTCATCGCTCACCTCAAAGCCTGCTTGCACTT
TTCAGAACAAGATGCCGTAATCTTCCTCGCAGAACCTCCAAACACCATAT
CGGATGACCGACTTTCTTTCCATCCCTTGCCGCTGTATCCGCCGCTTCCT
AGAAGGAATGTGTTTTTCTTAGTCAAGAAGGCAATATACTTAATTTTCAG
TCAAGCTTCGTGTTTAAGCACGATAGCATGTCTTCCATTTGATGTGCATC
ATATCATTCTGGCAACCCCTCCAGCTCTTCCTCTTCTACCACTCGTAATT
CTGTTACGGCCATTCTTTTTTCCGGACTCAGTGGTCATTGTTGATATTCA
TAATCTTGCATACACACTTTCTGCCCAGAATAACACAAATCGCTACTTTC
TCAAGCTTGCGCAGCTGCTCGAATTGCGTTCTTACCGCTTGACACATGAC
ACATGGACCGTGTCTTCCGCTCTCGCACGATTCCTACGCACAATGGGTAT
TAGAACACAAGTGCTTCGCGATCTTCCTTCGGACGTGTTCACCAGGTTTC
GAAATAAACTTCTTTCAACTGATGAGAAGAACAGCCTGATACAGCGCGTT
CGAAGCCATGCTACATGTTTCGGGCCAAAATCGCTGAACATCTCAGTACC
TCTGATAGTCTCTAGCACGAGTTGGACTCCTGACGAGGATTTATCTATTT
TACGACAATCTATTCTCCAACTGGATCGATGTGAAGTAACTCTTCGGGTT
GTAATAACGGGAAAAGGTCCGTTGCGGAGCGCCTTCGAAAAAGATATGCG
ACCGCTAAAACTGCAATACGTACAAGTATGGCTTGCCTGGTTACCATTTT
CTGATTATGCCGCACTACTTTCCGTTGCGACGCTTGGTGTCTCCTTGCAT
GCTAGCTCATCCTCCCTAGACTTACCGATGAAAGTTGTGGATATGCTGGG
CACCGGGCTTCCGGTTTTAGCGTTGCGATACCCATGTATTCATGAATTGG
TTCAAGATGGTCGCAACGGCATACTGTTCGAGGACTCTGAGAATCTCACG
GAGAGCATCAGAAGAGTTTTACGCGACGAGCAGCTTATGAACAGCTTGCG
GGAAGGAGCTGCCGACTCTTTCCATGAAGAATGGTTGACACAATGGGAGA
TTGTTGCAATACCGTCATTTTCGCGCGGAACATGA
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