Gvermi3834.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3834.t1
Unique NameGvermi3834.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length475
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4635840..4637346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703106.1
Preferred nameUGDH1
PFAMsUDPG_MGDP_dh,UDPG_MGDP_dh_C,UDPG_MGDP_dh_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00291
KEGG koko:K00012
KEGG ReactionR00286
KEGG Pathwayko00040,ko00053,ko00520,ko01100,map00040,map00053,map00520,map01100
KEGG ModuleM00014,M00129,M00361,M00362
Evalue3.58e-233
EggNOG OGsCOG1004@1|root,KOG2666@2759|Eukaryota
EC1.1.1.22
DescriptionUDP-glucose 6-dehydrogenase activity
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3834Gvermi3834Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4635840..4637346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3834.t1Gvermi3834.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4635840..4637346 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3834.t1.stop1Gvermi3834.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4635840..4635842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3834.t1.CDS1Gvermi3834.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4635840..4637195 -
Gvermi3834.t1.CDS2Gvermi3834.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4637278..4637346 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3834.t1.exon1Gvermi3834.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4635840..4637195 -
Gvermi3834.t1.exon2Gvermi3834.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4637278..4637346 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3834.t1.intron1Gvermi3834.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 4637196..4637277 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3834.t1.start1Gvermi3834.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4637344..4637346 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3834.t1 ID=Gvermi3834.t1|Name=Gvermi3834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=475bp
MVSIPSQDGLKICCIGAGYVGGPTMSMIALKCPEVQVKIVDISTSRIAAW
NSDELPIYEPGLHKVVTACRGKNLFFSTEIDDAIREADIIFVAVNTPTKK
VGIGAGRASDLTYWELAARRIAQVADTPKIVVEKSTVPIKTAEAISAVLH
GAGKTRFDVLSNPEFLAEGTAVSDLDNPDRVLIGGQLDGSGQKAMQVLAD
VYAHWVPRDRILLTNVWSSELSKLVANSFLAQRVSSINAISAVCEASGAD
VDEVARAVGMDTRIGSKFLKASVGFGGSCFQKDILNLVYLCESFGLPEVA
HYFHQVVHMNDYQKERFVRRIIHGLYNTVTGKKIALLGFAFKKDTGDTRE
SAAIDVCRRLIEEKAQVAIYDPKVDAEQIWMDLTYACGMDQTEVQKYVTL
CGDAMEACNGAHAMAVVTEWDEFKDVDYKRVYDSMVKPSFVFDGRNVLDH
AALRDTGFVVYAIGKPLDAKLSTA*
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spliced messenger RNA

>Gvermi3834.t1 ID=Gvermi3834.t1|Name=Gvermi3834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at ScGOVlb_41:4635840..4637346- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCCATCCCCTCCCAGGATGGCCTCAAGATCTGCTGCATCGGCGC
CGGCTACGTCGGTGGACCTACCATGTCCATGATTGCGCTCAAGTGCCCCG
AGGTACAAGTGAAAATCGTGGACATTTCCACATCGCGCATCGCCGCGTGG
AACAGCGACGAGCTGCCCATCTACGAGCCCGGGCTGCACAAGGTGGTCAC
GGCGTGCCGCGGCAAGAACCTGTTCTTCAGCACCGAGATCGACGACGCCA
TCCGGGAGGCTGACATCATCTTTGTCGCCGTCAACACGCCCACCAAGAAG
GTGGGCATCGGCGCCGGGCGCGCGTCGGACCTGACGTACTGGGAGCTGGC
GGCGCGGCGCATCGCGCAGGTGGCCGACACGCCCAAGATCGTGGTGGAAA
AGAGCACGGTGCCCATCAAGACGGCCGAGGCCATCTCGGCCGTGTTGCAC
GGCGCCGGCAAGACTCGCTTCGACGTGCTCAGCAACCCCGAGTTCCTGGC
CGAGGGCACCGCCGTGAGCGACCTGGACAACCCCGACCGCGTGCTCATTG
GCGGCCAGCTGGACGGCAGCGGGCAGAAGGCGATGCAGGTGCTGGCGGAC
GTGTACGCGCACTGGGTGCCTCGTGATCGCATCCTGCTGACCAACGTGTG
GTCGTCCGAGCTGTCCAAGCTGGTGGCCAACTCGTTCCTGGCGCAGCGCG
TGTCGTCCATCAACGCCATCTCGGCGGTGTGCGAGGCGTCCGGCGCGGAC
GTGGACGAGGTGGCGCGCGCCGTGGGCATGGACACGCGCATCGGCAGCAA
GTTCCTCAAGGCGTCGGTGGGCTTTGGCGGGTCGTGCTTCCAGAAGGACA
TCCTCAACCTGGTGTACCTGTGCGAGTCGTTCGGGCTGCCCGAGGTGGCG
CACTACTTCCACCAGGTGGTGCACATGAACGACTACCAGAAGGAGAGGTT
TGTGCGGCGCATCATCCACGGGCTGTACAACACGGTGACGGGGAAGAAGA
TTGCGCTGCTGGGGTTTGCGTTCAAGAAGGACACAGGCGACACGCGCGAG
TCGGCGGCCATCGACGTGTGCCGGCGGCTGATCGAGGAGAAGGCGCAGGT
GGCGATCTACGACCCCAAGGTGGACGCGGAGCAGATCTGGATGGACCTGA
CGTACGCGTGCGGCATGGACCAGACGGAGGTGCAGAAGTACGTGACGCTG
TGCGGCGACGCGATGGAGGCGTGCAACGGGGCGCACGCCATGGCGGTGGT
GACGGAGTGGGACGAGTTCAAGGATGTGGACTACAAGCGCGTGTACGACT
CGATGGTGAAGCCGTCGTTTGTGTTTGACGGGCGCAACGTGCTGGACCAC
GCGGCGCTGCGCGACACTGGGTTTGTGGTGTACGCCATTGGCAAGCCGCT
GGACGCCAAGCTGAGCACGGCGTAG
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protein sequence of Gvermi3834.t1

>Gvermi3834.t1 ID=Gvermi3834.t1|Name=Gvermi3834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=475bp
MVSIPSQDGLKICCIGAGYVGGPTMSMIALKCPEVQVKIVDISTSRIAAW
NSDELPIYEPGLHKVVTACRGKNLFFSTEIDDAIREADIIFVAVNTPTKK
VGIGAGRASDLTYWELAARRIAQVADTPKIVVEKSTVPIKTAEAISAVLH
GAGKTRFDVLSNPEFLAEGTAVSDLDNPDRVLIGGQLDGSGQKAMQVLAD
VYAHWVPRDRILLTNVWSSELSKLVANSFLAQRVSSINAISAVCEASGAD
VDEVARAVGMDTRIGSKFLKASVGFGGSCFQKDILNLVYLCESFGLPEVA
HYFHQVVHMNDYQKERFVRRIIHGLYNTVTGKKIALLGFAFKKDTGDTRE
SAAIDVCRRLIEEKAQVAIYDPKVDAEQIWMDLTYACGMDQTEVQKYVTL
CGDAMEACNGAHAMAVVTEWDEFKDVDYKRVYDSMVKPSFVFDGRNVLDH
AALRDTGFVVYAIGKPLDAKLSTA*
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mRNA from alignment at ScGOVlb_41:4635840..4637346-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3834.t1 ID=Gvermi3834.t1|Name=Gvermi3834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1507bp|location=Sequence derived from alignment at ScGOVlb_41:4635840..4637346- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTTCCATCCCCTCCCAGGATGGCCTCAAGATCTGCTGCATCGGCGC
CGGCTACGTCGGTGGACCTGTGAGTTGAATGCGCCTCGCTTCCGCCCTTG
CCGCGCTTGCGCCCACAGCGCCCGTTTCTAACGCCACCCTCCCCACTGCA
GACCATGTCCATGATTGCGCTCAAGTGCCCCGAGGTACAAGTGAAAATCG
TGGACATTTCCACATCGCGCATCGCCGCGTGGAACAGCGACGAGCTGCCC
ATCTACGAGCCCGGGCTGCACAAGGTGGTCACGGCGTGCCGCGGCAAGAA
CCTGTTCTTCAGCACCGAGATCGACGACGCCATCCGGGAGGCTGACATCA
TCTTTGTCGCCGTCAACACGCCCACCAAGAAGGTGGGCATCGGCGCCGGG
CGCGCGTCGGACCTGACGTACTGGGAGCTGGCGGCGCGGCGCATCGCGCA
GGTGGCCGACACGCCCAAGATCGTGGTGGAAAAGAGCACGGTGCCCATCA
AGACGGCCGAGGCCATCTCGGCCGTGTTGCACGGCGCCGGCAAGACTCGC
TTCGACGTGCTCAGCAACCCCGAGTTCCTGGCCGAGGGCACCGCCGTGAG
CGACCTGGACAACCCCGACCGCGTGCTCATTGGCGGCCAGCTGGACGGCA
GCGGGCAGAAGGCGATGCAGGTGCTGGCGGACGTGTACGCGCACTGGGTG
CCTCGTGATCGCATCCTGCTGACCAACGTGTGGTCGTCCGAGCTGTCCAA
GCTGGTGGCCAACTCGTTCCTGGCGCAGCGCGTGTCGTCCATCAACGCCA
TCTCGGCGGTGTGCGAGGCGTCCGGCGCGGACGTGGACGAGGTGGCGCGC
GCCGTGGGCATGGACACGCGCATCGGCAGCAAGTTCCTCAAGGCGTCGGT
GGGCTTTGGCGGGTCGTGCTTCCAGAAGGACATCCTCAACCTGGTGTACC
TGTGCGAGTCGTTCGGGCTGCCCGAGGTGGCGCACTACTTCCACCAGGTG
GTGCACATGAACGACTACCAGAAGGAGAGGTTTGTGCGGCGCATCATCCA
CGGGCTGTACAACACGGTGACGGGGAAGAAGATTGCGCTGCTGGGGTTTG
CGTTCAAGAAGGACACAGGCGACACGCGCGAGTCGGCGGCCATCGACGTG
TGCCGGCGGCTGATCGAGGAGAAGGCGCAGGTGGCGATCTACGACCCCAA
GGTGGACGCGGAGCAGATCTGGATGGACCTGACGTACGCGTGCGGCATGG
ACCAGACGGAGGTGCAGAAGTACGTGACGCTGTGCGGCGACGCGATGGAG
GCGTGCAACGGGGCGCACGCCATGGCGGTGGTGACGGAGTGGGACGAGTT
CAAGGATGTGGACTACAAGCGCGTGTACGACTCGATGGTGAAGCCGTCGT
TTGTGTTTGACGGGCGCAACGTGCTGGACCACGCGGCGCTGCGCGACACT
GGGTTTGTGGTGTACGCCATTGGCAAGCCGCTGGACGCCAAGCTGAGCAC
GGCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:4635840..4637346-

>Gvermi3834.t1 ID=Gvermi3834.t1|Name=Gvermi3834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1425bp|location=Sequence derived from alignment at ScGOVlb_41:4635840..4637346- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTTCCATCCCCTCCCAGGATGGCCTCAAGATCTGCTGCATCGGCGC
CGGCTACGTCGGTGGACCTACCATGTCCATGATTGCGCTCAAGTGCCCCG
AGGTACAAGTGAAAATCGTGGACATTTCCACATCGCGCATCGCCGCGTGG
AACAGCGACGAGCTGCCCATCTACGAGCCCGGGCTGCACAAGGTGGTCAC
GGCGTGCCGCGGCAAGAACCTGTTCTTCAGCACCGAGATCGACGACGCCA
TCCGGGAGGCTGACATCATCTTTGTCGCCGTCAACACGCCCACCAAGAAG
GTGGGCATCGGCGCCGGGCGCGCGTCGGACCTGACGTACTGGGAGCTGGC
GGCGCGGCGCATCGCGCAGGTGGCCGACACGCCCAAGATCGTGGTGGAAA
AGAGCACGGTGCCCATCAAGACGGCCGAGGCCATCTCGGCCGTGTTGCAC
GGCGCCGGCAAGACTCGCTTCGACGTGCTCAGCAACCCCGAGTTCCTGGC
CGAGGGCACCGCCGTGAGCGACCTGGACAACCCCGACCGCGTGCTCATTG
GCGGCCAGCTGGACGGCAGCGGGCAGAAGGCGATGCAGGTGCTGGCGGAC
GTGTACGCGCACTGGGTGCCTCGTGATCGCATCCTGCTGACCAACGTGTG
GTCGTCCGAGCTGTCCAAGCTGGTGGCCAACTCGTTCCTGGCGCAGCGCG
TGTCGTCCATCAACGCCATCTCGGCGGTGTGCGAGGCGTCCGGCGCGGAC
GTGGACGAGGTGGCGCGCGCCGTGGGCATGGACACGCGCATCGGCAGCAA
GTTCCTCAAGGCGTCGGTGGGCTTTGGCGGGTCGTGCTTCCAGAAGGACA
TCCTCAACCTGGTGTACCTGTGCGAGTCGTTCGGGCTGCCCGAGGTGGCG
CACTACTTCCACCAGGTGGTGCACATGAACGACTACCAGAAGGAGAGGTT
TGTGCGGCGCATCATCCACGGGCTGTACAACACGGTGACGGGGAAGAAGA
TTGCGCTGCTGGGGTTTGCGTTCAAGAAGGACACAGGCGACACGCGCGAG
TCGGCGGCCATCGACGTGTGCCGGCGGCTGATCGAGGAGAAGGCGCAGGT
GGCGATCTACGACCCCAAGGTGGACGCGGAGCAGATCTGGATGGACCTGA
CGTACGCGTGCGGCATGGACCAGACGGAGGTGCAGAAGTACGTGACGCTG
TGCGGCGACGCGATGGAGGCGTGCAACGGGGCGCACGCCATGGCGGTGGT
GACGGAGTGGGACGAGTTCAAGGATGTGGACTACAAGCGCGTGTACGACT
CGATGGTGAAGCCGTCGTTTGTGTTTGACGGGCGCAACGTGCTGGACCAC
GCGGCGCTGCGCGACACTGGGTTTGTGGTGTACGCCATTGGCAAGCCGCT
GGACGCCAAGCTGAGCACGGCGTAG
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