Gvermi3809.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3809.t1
Unique Name	Gvermi3809.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	413

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:4506697..4507935 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3712.Bo7g103770.1
PFAMs	F-box-like,LRR_6
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K10268
Evalue	3.61e-10
EggNOG OGs	KOG1947@1\|root,KOG4341@1\|root,KOG1947@2759\|Eukaryota,KOG4341@2759\|Eukaryota,37JFW@33090\|Viridiplantae,3GX7P@35493\|Streptophyta,3HXMD@3699\|Brassicales
Description	F-box LRR-repeat protein
COG category	S
BRITE	ko00000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3809	Gvermi3809	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 4506697..4507935 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3809.t1.start1	Gvermi3809.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 4506697..4506699 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3809.t1.CDS1	Gvermi3809.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 4506697..4507935 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3809.t1.exon1	Gvermi3809.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 4506697..4507935 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3809.t1.stop1	Gvermi3809.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 4507933..4507935 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3809.t1	Gvermi3809.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 4506697..4507935 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:4506697..4507935+
coding sequence from alignment at ScGOVlb_41:4506697..4507935+

mRNA sequence

>Gvermi3809.t1 ID=Gvermi3809.t1|Name=Gvermi3809.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=413bp
MTWLKSLLEHVAQAWRLLFRRRRSDVSRHSPAPRRPVYHEPASDRLALLS
LPDDILFEIVYRLTHSPHPTRTTSMNLVELHTYKKGLPLASTSTKLAKVF
YASLDNVCLSSTKVDDAAIHALATNAAHALRRLVLRDCKISNDALFSLKN
AEHLRSLDLSFVTSINDAGLISFCNAAAPRLTTLLLRSCPAITDAAMRTV
SKCRHLHTLDLSYCKQLTDAGVVEAVAGCASSLRFLAIAHIPFLTDQSLI
AVGTCCTNLLQLCARGLHCVTDIGFSSLCSGVGQTIEGIDVTACNGLTRD
ATLRSFRFYCPKIYAHIMPAFASRTLRQIIISTLRQNIFIVHGSDPLSGN
ETVHTVLIDNGDIVSASLLSSGTIDLSLLGVVLCKSYGSGLNDDTKKMLE
VDYGIPTTSLTD*

spliced messenger RNA

>Gvermi3809.t1 ID=Gvermi3809.t1|Name=Gvermi3809.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at ScGOVlb_41:4506697..4507935+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTGGCTCAAATCCCTCCTTGAGCACGTTGCCCAAGCATGGCGTCT
GCTGTTCCGCCGTCGCCGCTCAGACGTCTCCCGTCACTCCCCTGCCCCCC
GCCGCCCCGTCTATCACGAGCCCGCTTCCGACCGCCTCGCCCTCCTGTCC
TTGCCCGACGACATCCTTTTCGAAATAGTGTACAGACTCACTCACTCCCC
CCATCCTACGCGCACCACCAGCATGAACCTCGTCGAGCTACACACGTACA
AGAAAGGCCTACCGCTTGCCTCCACCTCCACCAAGCTCGCCAAAGTCTTC
TACGCCTCCTTGGACAACGTGTGCCTGTCGTCTACCAAGGTCGATGATGC
CGCTATACACGCCCTGGCCACCAATGCCGCTCACGCCCTGCGAAGATTAG
TGCTTCGCGACTGCAAAATTTCCAACGACGCCCTTTTTTCGCTCAAGAAC
GCCGAACATCTCCGCTCCCTAGACCTTTCCTTCGTAACTTCCATCAACGA
CGCCGGCCTCATCTCATTTTGCAACGCCGCCGCGCCTCGCCTCACTACCC
TGTTGCTCAGATCGTGCCCAGCCATCACAGACGCCGCCATGCGCACCGTG
AGCAAATGCCGCCACCTTCACACCCTCGATCTCAGTTACTGCAAGCAGTT
GACCGATGCTGGCGTCGTAGAAGCCGTCGCCGGCTGCGCCTCCTCGCTAC
GCTTTCTTGCAATAGCGCACATCCCTTTCCTCACCGATCAATCCCTCATT
GCCGTTGGAACTTGCTGCACCAACCTTTTGCAACTCTGTGCAAGGGGCTT
GCACTGCGTCACAGACATCGGCTTTTCCTCGCTCTGCAGTGGCGTCGGCC
AGACCATTGAGGGCATCGATGTTACCGCCTGTAACGGTCTCACTCGAGAT
GCCACCCTGAGAAGTTTTCGTTTCTACTGTCCAAAGATCTATGCACACAT
TATGCCCGCCTTCGCCTCAAGAACTTTGCGACAAATTATTATCAGCACTT
TGCGACAAAATATATTCATCGTGCACGGGAGCGATCCTCTTTCGGGCAAC
GAAACCGTGCACACCGTGCTGATCGACAACGGAGATATTGTTTCGGCCTC
ATTACTAAGTTCTGGTACAATAGATCTGTCGTTATTGGGAGTGGTTCTTT
GCAAGAGTTACGGATCCGGATTGAACGACGACACAAAGAAGATGTTGGAG
GTCGACTACGGCATTCCTACTACATCGCTAACAGACTGA

protein sequence of Gvermi3809.t1

>Gvermi3809.t1 ID=Gvermi3809.t1|Name=Gvermi3809.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=413bp
MTWLKSLLEHVAQAWRLLFRRRRSDVSRHSPAPRRPVYHEPASDRLALLS
LPDDILFEIVYRLTHSPHPTRTTSMNLVELHTYKKGLPLASTSTKLAKVF
YASLDNVCLSSTKVDDAAIHALATNAAHALRRLVLRDCKISNDALFSLKN
AEHLRSLDLSFVTSINDAGLISFCNAAAPRLTTLLLRSCPAITDAAMRTV
SKCRHLHTLDLSYCKQLTDAGVVEAVAGCASSLRFLAIAHIPFLTDQSLI
AVGTCCTNLLQLCARGLHCVTDIGFSSLCSGVGQTIEGIDVTACNGLTRD
ATLRSFRFYCPKIYAHIMPAFASRTLRQIIISTLRQNIFIVHGSDPLSGN
ETVHTVLIDNGDIVSASLLSSGTIDLSLLGVVLCKSYGSGLNDDTKKMLE
VDYGIPTTSLTD*

mRNA from alignment at ScGOVlb_41:4506697..4507935+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3809.t1 ID=Gvermi3809.t1|Name=Gvermi3809.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at ScGOVlb_41:4506697..4507935+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCTGGCTCAAATCCCTCCTTGAGCACGTTGCCCAAGCATGGCGTCT
GCTGTTCCGCCGTCGCCGCTCAGACGTCTCCCGTCACTCCCCTGCCCCCC
GCCGCCCCGTCTATCACGAGCCCGCTTCCGACCGCCTCGCCCTCCTGTCC
TTGCCCGACGACATCCTTTTCGAAATAGTGTACAGACTCACTCACTCCCC
CCATCCTACGCGCACCACCAGCATGAACCTCGTCGAGCTACACACGTACA
AGAAAGGCCTACCGCTTGCCTCCACCTCCACCAAGCTCGCCAAAGTCTTC
TACGCCTCCTTGGACAACGTGTGCCTGTCGTCTACCAAGGTCGATGATGC
CGCTATACACGCCCTGGCCACCAATGCCGCTCACGCCCTGCGAAGATTAG
TGCTTCGCGACTGCAAAATTTCCAACGACGCCCTTTTTTCGCTCAAGAAC
GCCGAACATCTCCGCTCCCTAGACCTTTCCTTCGTAACTTCCATCAACGA
CGCCGGCCTCATCTCATTTTGCAACGCCGCCGCGCCTCGCCTCACTACCC
TGTTGCTCAGATCGTGCCCAGCCATCACAGACGCCGCCATGCGCACCGTG
AGCAAATGCCGCCACCTTCACACCCTCGATCTCAGTTACTGCAAGCAGTT
GACCGATGCTGGCGTCGTAGAAGCCGTCGCCGGCTGCGCCTCCTCGCTAC
GCTTTCTTGCAATAGCGCACATCCCTTTCCTCACCGATCAATCCCTCATT
GCCGTTGGAACTTGCTGCACCAACCTTTTGCAACTCTGTGCAAGGGGCTT
GCACTGCGTCACAGACATCGGCTTTTCCTCGCTCTGCAGTGGCGTCGGCC
AGACCATTGAGGGCATCGATGTTACCGCCTGTAACGGTCTCACTCGAGAT
GCCACCCTGAGAAGTTTTCGTTTCTACTGTCCAAAGATCTATGCACACAT
TATGCCCGCCTTCGCCTCAAGAACTTTGCGACAAATTATTATCAGCACTT
TGCGACAAAATATATTCATCGTGCACGGGAGCGATCCTCTTTCGGGCAAC
GAAACCGTGCACACCGTGCTGATCGACAACGGAGATATTGTTTCGGCCTC
ATTACTAAGTTCTGGTACAATAGATCTGTCGTTATTGGGAGTGGTTCTTT
GCAAGAGTTACGGATCCGGATTGAACGACGACACAAAGAAGATGTTGGAG
GTCGACTACGGCATTCCTACTACATCGCTAACAGACTGA

Coding sequence (CDS) from alignment at ScGOVlb_41:4506697..4507935+

>Gvermi3809.t1 ID=Gvermi3809.t1|Name=Gvermi3809.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1239bp|location=Sequence derived from alignment at ScGOVlb_41:4506697..4507935+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCTGGCTCAAATCCCTCCTTGAGCACGTTGCCCAAGCATGGCGTCT
GCTGTTCCGCCGTCGCCGCTCAGACGTCTCCCGTCACTCCCCTGCCCCCC
GCCGCCCCGTCTATCACGAGCCCGCTTCCGACCGCCTCGCCCTCCTGTCC
TTGCCCGACGACATCCTTTTCGAAATAGTGTACAGACTCACTCACTCCCC
CCATCCTACGCGCACCACCAGCATGAACCTCGTCGAGCTACACACGTACA
AGAAAGGCCTACCGCTTGCCTCCACCTCCACCAAGCTCGCCAAAGTCTTC
TACGCCTCCTTGGACAACGTGTGCCTGTCGTCTACCAAGGTCGATGATGC
CGCTATACACGCCCTGGCCACCAATGCCGCTCACGCCCTGCGAAGATTAG
TGCTTCGCGACTGCAAAATTTCCAACGACGCCCTTTTTTCGCTCAAGAAC
GCCGAACATCTCCGCTCCCTAGACCTTTCCTTCGTAACTTCCATCAACGA
CGCCGGCCTCATCTCATTTTGCAACGCCGCCGCGCCTCGCCTCACTACCC
TGTTGCTCAGATCGTGCCCAGCCATCACAGACGCCGCCATGCGCACCGTG
AGCAAATGCCGCCACCTTCACACCCTCGATCTCAGTTACTGCAAGCAGTT
GACCGATGCTGGCGTCGTAGAAGCCGTCGCCGGCTGCGCCTCCTCGCTAC
GCTTTCTTGCAATAGCGCACATCCCTTTCCTCACCGATCAATCCCTCATT
GCCGTTGGAACTTGCTGCACCAACCTTTTGCAACTCTGTGCAAGGGGCTT
GCACTGCGTCACAGACATCGGCTTTTCCTCGCTCTGCAGTGGCGTCGGCC
AGACCATTGAGGGCATCGATGTTACCGCCTGTAACGGTCTCACTCGAGAT
GCCACCCTGAGAAGTTTTCGTTTCTACTGTCCAAAGATCTATGCACACAT
TATGCCCGCCTTCGCCTCAAGAACTTTGCGACAAATTATTATCAGCACTT
TGCGACAAAATATATTCATCGTGCACGGGAGCGATCCTCTTTCGGGCAAC
GAAACCGTGCACACCGTGCTGATCGACAACGGAGATATTGTTTCGGCCTC
ATTACTAAGTTCTGGTACAATAGATCTGTCGTTATTGGGAGTGGTTCTTT
GCAAGAGTTACGGATCCGGATTGAACGACGACACAAAGAAGATGTTGGAG
GTCGACTACGGCATTCCTACTACATCGCTAACAGACTGA