Gvermi3800.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3800.t1
Unique NameGvermi3800.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length621
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4485147..4487009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3800Gvermi3800Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4485147..4487009 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3800.t1.stop1Gvermi3800.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4485147..4485149 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3800.t1.CDS1Gvermi3800.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4485147..4487009 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3800.t1.exon1Gvermi3800.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4485147..4487009 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3800.t1.start1Gvermi3800.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4487007..4487009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3800.t1Gvermi3800.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4485147..4487009 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3800.t1 ID=Gvermi3800.t1|Name=Gvermi3800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=621bp
MKANSIKTVRDMTLTPSSLGNPSQLFAQHETRLQESTLPSPKGEAGSQEQ
NGLEDVTKTLLQIQSAIQALANAHNELLRTISQDKPWWYRNMLLISYSYP
ESYTAKTEKQFYALLKRFSGDGSLDLSPQSSYQDDKALPEVIQTYLRNLQ
CQAHHQTIQASPKPYVMFKKEDWRKWKQRLERIKTEVRNSMLKYEFEKQV
LVLLKKIDAFQEDFSDQYFRSNVEWIYYYEKSWWNKMFQEVSSLAEKLIL
TTKSILTSVRSTLAKGKQRLSHEWNSLLISISELNLSAPLEGADHYATEA
RELLDEFSAELGEAFTDPKDQVVFVRFVLGGVMIYIIATLLTNYLRRQIG
DARRQFEIRQEVRRAAVEDTMNISVDANNSSVFARRTPLESWTERNHDTI
YPGPAAIQTDAAAANDNPDINVPRISNKQERNPRTSNESAVSCKNASTLS
RAKRNEEIIASINAQGPAHKRKAADSIKLGGRKINMVYDTDDGNDDSGAE
VVAIVASAKESDIKNPRKPLLKTNVNERGNGSRPRDFDSMAESARQRKVK
RILEDSKRILMDASNTSHGSEETRGLRSSSSTASTKSSDALAKRDTKIKS
SVPRRRSARLSAANLNRNAG*
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spliced messenger RNA

>Gvermi3800.t1 ID=Gvermi3800.t1|Name=Gvermi3800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1863bp|location=Sequence derived from alignment at ScGOVlb_41:4485147..4487009- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCGAACTCCATCAAAACAGTTCGGGATATGACCCTTACACCGTC
ATCGCTGGGAAATCCGTCCCAATTATTTGCCCAGCATGAGACTCGTCTGC
AAGAGTCCACTTTACCGTCACCGAAAGGAGAAGCTGGAAGCCAGGAGCAA
AACGGCCTTGAAGACGTTACGAAGACTTTGCTGCAAATACAAAGCGCTAT
TCAAGCTCTAGCCAATGCTCATAATGAGCTTCTGCGCACAATCAGTCAAG
ACAAACCCTGGTGGTATCGAAATATGCTGCTAATATCATATAGTTATCCG
GAGAGCTATACTGCGAAGACGGAAAAGCAGTTTTATGCTTTGCTTAAGCG
TTTTTCAGGCGATGGGTCACTGGACTTGAGCCCACAATCTTCGTATCAAG
ACGATAAGGCGTTGCCAGAGGTGATTCAAACCTATCTACGGAATTTGCAG
TGCCAAGCTCATCATCAGACCATTCAGGCCTCCCCAAAACCATATGTCAT
GTTCAAGAAAGAAGACTGGAGAAAGTGGAAGCAAAGGCTAGAACGCATTA
AAACAGAAGTGCGCAATAGCATGCTGAAATATGAGTTCGAGAAGCAAGTC
CTTGTCTTGTTGAAAAAGATTGACGCGTTCCAAGAGGACTTCAGTGACCA
ATATTTCCGATCAAATGTCGAATGGATTTACTACTATGAAAAATCCTGGT
GGAACAAGATGTTCCAGGAGGTTTCTAGTCTGGCAGAGAAACTCATATTG
ACCACGAAAAGCATTTTGACGAGTGTCAGAAGCACTTTGGCGAAAGGAAA
ACAAAGGCTTTCTCACGAGTGGAATTCGCTTCTCATTAGTATTTCAGAGT
TGAATTTGTCTGCGCCGCTGGAAGGTGCTGACCATTACGCCACGGAAGCG
AGGGAACTATTGGACGAATTCAGCGCAGAACTGGGAGAGGCTTTCACAGA
CCCCAAAGACCAAGTTGTATTTGTTAGATTTGTTTTGGGTGGCGTCATGA
TCTACATAATCGCTACGCTTCTCACCAATTACTTACGAAGACAAATTGGA
GACGCCAGACGACAATTTGAAATCCGGCAAGAGGTTCGACGGGCTGCTGT
GGAAGACACCATGAATATCTCGGTAGACGCAAATAATTCCAGTGTGTTCG
CTAGGAGAACACCGTTAGAGAGTTGGACGGAGAGAAATCATGACACCATC
TATCCAGGCCCAGCGGCAATTCAGACTGACGCGGCCGCAGCAAACGACAA
CCCCGATATCAACGTGCCTCGCATTTCGAACAAGCAAGAAAGAAACCCTC
GCACATCGAATGAGTCGGCGGTATCTTGCAAAAACGCCAGCACTTTATCA
AGAGCAAAACGAAACGAAGAAATCATCGCTTCCATCAATGCTCAAGGTCC
GGCTCATAAAAGAAAAGCGGCCGATTCCATCAAACTTGGCGGGCGGAAAA
TTAATATGGTCTATGACACTGATGATGGGAATGACGATTCTGGAGCTGAA
GTGGTTGCCATAGTCGCCTCCGCAAAAGAAAGCGACATAAAAAATCCCCG
AAAGCCTCTGTTGAAAACAAACGTAAACGAGCGGGGAAATGGAAGTAGAC
CGAGAGACTTTGATAGCATGGCAGAAAGTGCAAGGCAGAGGAAGGTAAAG
CGAATACTGGAAGATTCCAAGAGAATTTTGATGGATGCATCAAATACTTC
TCATGGATCGGAAGAGACTAGAGGGTTGAGATCTAGTTCAAGCACGGCAA
GCACAAAGTCATCAGACGCACTTGCCAAGCGGGATACAAAGATCAAATCC
TCCGTTCCCAGAAGACGCTCCGCTCGGTTATCCGCTGCCAATTTGAACAG
AAATGCTGGCTGA
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protein sequence of Gvermi3800.t1

>Gvermi3800.t1 ID=Gvermi3800.t1|Name=Gvermi3800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=621bp
MKANSIKTVRDMTLTPSSLGNPSQLFAQHETRLQESTLPSPKGEAGSQEQ
NGLEDVTKTLLQIQSAIQALANAHNELLRTISQDKPWWYRNMLLISYSYP
ESYTAKTEKQFYALLKRFSGDGSLDLSPQSSYQDDKALPEVIQTYLRNLQ
CQAHHQTIQASPKPYVMFKKEDWRKWKQRLERIKTEVRNSMLKYEFEKQV
LVLLKKIDAFQEDFSDQYFRSNVEWIYYYEKSWWNKMFQEVSSLAEKLIL
TTKSILTSVRSTLAKGKQRLSHEWNSLLISISELNLSAPLEGADHYATEA
RELLDEFSAELGEAFTDPKDQVVFVRFVLGGVMIYIIATLLTNYLRRQIG
DARRQFEIRQEVRRAAVEDTMNISVDANNSSVFARRTPLESWTERNHDTI
YPGPAAIQTDAAAANDNPDINVPRISNKQERNPRTSNESAVSCKNASTLS
RAKRNEEIIASINAQGPAHKRKAADSIKLGGRKINMVYDTDDGNDDSGAE
VVAIVASAKESDIKNPRKPLLKTNVNERGNGSRPRDFDSMAESARQRKVK
RILEDSKRILMDASNTSHGSEETRGLRSSSSTASTKSSDALAKRDTKIKS
SVPRRRSARLSAANLNRNAG*
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mRNA from alignment at ScGOVlb_41:4485147..4487009-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3800.t1 ID=Gvermi3800.t1|Name=Gvermi3800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1863bp|location=Sequence derived from alignment at ScGOVlb_41:4485147..4487009- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGCGAACTCCATCAAAACAGTTCGGGATATGACCCTTACACCGTC
ATCGCTGGGAAATCCGTCCCAATTATTTGCCCAGCATGAGACTCGTCTGC
AAGAGTCCACTTTACCGTCACCGAAAGGAGAAGCTGGAAGCCAGGAGCAA
AACGGCCTTGAAGACGTTACGAAGACTTTGCTGCAAATACAAAGCGCTAT
TCAAGCTCTAGCCAATGCTCATAATGAGCTTCTGCGCACAATCAGTCAAG
ACAAACCCTGGTGGTATCGAAATATGCTGCTAATATCATATAGTTATCCG
GAGAGCTATACTGCGAAGACGGAAAAGCAGTTTTATGCTTTGCTTAAGCG
TTTTTCAGGCGATGGGTCACTGGACTTGAGCCCACAATCTTCGTATCAAG
ACGATAAGGCGTTGCCAGAGGTGATTCAAACCTATCTACGGAATTTGCAG
TGCCAAGCTCATCATCAGACCATTCAGGCCTCCCCAAAACCATATGTCAT
GTTCAAGAAAGAAGACTGGAGAAAGTGGAAGCAAAGGCTAGAACGCATTA
AAACAGAAGTGCGCAATAGCATGCTGAAATATGAGTTCGAGAAGCAAGTC
CTTGTCTTGTTGAAAAAGATTGACGCGTTCCAAGAGGACTTCAGTGACCA
ATATTTCCGATCAAATGTCGAATGGATTTACTACTATGAAAAATCCTGGT
GGAACAAGATGTTCCAGGAGGTTTCTAGTCTGGCAGAGAAACTCATATTG
ACCACGAAAAGCATTTTGACGAGTGTCAGAAGCACTTTGGCGAAAGGAAA
ACAAAGGCTTTCTCACGAGTGGAATTCGCTTCTCATTAGTATTTCAGAGT
TGAATTTGTCTGCGCCGCTGGAAGGTGCTGACCATTACGCCACGGAAGCG
AGGGAACTATTGGACGAATTCAGCGCAGAACTGGGAGAGGCTTTCACAGA
CCCCAAAGACCAAGTTGTATTTGTTAGATTTGTTTTGGGTGGCGTCATGA
TCTACATAATCGCTACGCTTCTCACCAATTACTTACGAAGACAAATTGGA
GACGCCAGACGACAATTTGAAATCCGGCAAGAGGTTCGACGGGCTGCTGT
GGAAGACACCATGAATATCTCGGTAGACGCAAATAATTCCAGTGTGTTCG
CTAGGAGAACACCGTTAGAGAGTTGGACGGAGAGAAATCATGACACCATC
TATCCAGGCCCAGCGGCAATTCAGACTGACGCGGCCGCAGCAAACGACAA
CCCCGATATCAACGTGCCTCGCATTTCGAACAAGCAAGAAAGAAACCCTC
GCACATCGAATGAGTCGGCGGTATCTTGCAAAAACGCCAGCACTTTATCA
AGAGCAAAACGAAACGAAGAAATCATCGCTTCCATCAATGCTCAAGGTCC
GGCTCATAAAAGAAAAGCGGCCGATTCCATCAAACTTGGCGGGCGGAAAA
TTAATATGGTCTATGACACTGATGATGGGAATGACGATTCTGGAGCTGAA
GTGGTTGCCATAGTCGCCTCCGCAAAAGAAAGCGACATAAAAAATCCCCG
AAAGCCTCTGTTGAAAACAAACGTAAACGAGCGGGGAAATGGAAGTAGAC
CGAGAGACTTTGATAGCATGGCAGAAAGTGCAAGGCAGAGGAAGGTAAAG
CGAATACTGGAAGATTCCAAGAGAATTTTGATGGATGCATCAAATACTTC
TCATGGATCGGAAGAGACTAGAGGGTTGAGATCTAGTTCAAGCACGGCAA
GCACAAAGTCATCAGACGCACTTGCCAAGCGGGATACAAAGATCAAATCC
TCCGTTCCCAGAAGACGCTCCGCTCGGTTATCCGCTGCCAATTTGAACAG
AAATGCTGGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4485147..4487009-

>Gvermi3800.t1 ID=Gvermi3800.t1|Name=Gvermi3800.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1863bp|location=Sequence derived from alignment at ScGOVlb_41:4485147..4487009- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGCGAACTCCATCAAAACAGTTCGGGATATGACCCTTACACCGTC
ATCGCTGGGAAATCCGTCCCAATTATTTGCCCAGCATGAGACTCGTCTGC
AAGAGTCCACTTTACCGTCACCGAAAGGAGAAGCTGGAAGCCAGGAGCAA
AACGGCCTTGAAGACGTTACGAAGACTTTGCTGCAAATACAAAGCGCTAT
TCAAGCTCTAGCCAATGCTCATAATGAGCTTCTGCGCACAATCAGTCAAG
ACAAACCCTGGTGGTATCGAAATATGCTGCTAATATCATATAGTTATCCG
GAGAGCTATACTGCGAAGACGGAAAAGCAGTTTTATGCTTTGCTTAAGCG
TTTTTCAGGCGATGGGTCACTGGACTTGAGCCCACAATCTTCGTATCAAG
ACGATAAGGCGTTGCCAGAGGTGATTCAAACCTATCTACGGAATTTGCAG
TGCCAAGCTCATCATCAGACCATTCAGGCCTCCCCAAAACCATATGTCAT
GTTCAAGAAAGAAGACTGGAGAAAGTGGAAGCAAAGGCTAGAACGCATTA
AAACAGAAGTGCGCAATAGCATGCTGAAATATGAGTTCGAGAAGCAAGTC
CTTGTCTTGTTGAAAAAGATTGACGCGTTCCAAGAGGACTTCAGTGACCA
ATATTTCCGATCAAATGTCGAATGGATTTACTACTATGAAAAATCCTGGT
GGAACAAGATGTTCCAGGAGGTTTCTAGTCTGGCAGAGAAACTCATATTG
ACCACGAAAAGCATTTTGACGAGTGTCAGAAGCACTTTGGCGAAAGGAAA
ACAAAGGCTTTCTCACGAGTGGAATTCGCTTCTCATTAGTATTTCAGAGT
TGAATTTGTCTGCGCCGCTGGAAGGTGCTGACCATTACGCCACGGAAGCG
AGGGAACTATTGGACGAATTCAGCGCAGAACTGGGAGAGGCTTTCACAGA
CCCCAAAGACCAAGTTGTATTTGTTAGATTTGTTTTGGGTGGCGTCATGA
TCTACATAATCGCTACGCTTCTCACCAATTACTTACGAAGACAAATTGGA
GACGCCAGACGACAATTTGAAATCCGGCAAGAGGTTCGACGGGCTGCTGT
GGAAGACACCATGAATATCTCGGTAGACGCAAATAATTCCAGTGTGTTCG
CTAGGAGAACACCGTTAGAGAGTTGGACGGAGAGAAATCATGACACCATC
TATCCAGGCCCAGCGGCAATTCAGACTGACGCGGCCGCAGCAAACGACAA
CCCCGATATCAACGTGCCTCGCATTTCGAACAAGCAAGAAAGAAACCCTC
GCACATCGAATGAGTCGGCGGTATCTTGCAAAAACGCCAGCACTTTATCA
AGAGCAAAACGAAACGAAGAAATCATCGCTTCCATCAATGCTCAAGGTCC
GGCTCATAAAAGAAAAGCGGCCGATTCCATCAAACTTGGCGGGCGGAAAA
TTAATATGGTCTATGACACTGATGATGGGAATGACGATTCTGGAGCTGAA
GTGGTTGCCATAGTCGCCTCCGCAAAAGAAAGCGACATAAAAAATCCCCG
AAAGCCTCTGTTGAAAACAAACGTAAACGAGCGGGGAAATGGAAGTAGAC
CGAGAGACTTTGATAGCATGGCAGAAAGTGCAAGGCAGAGGAAGGTAAAG
CGAATACTGGAAGATTCCAAGAGAATTTTGATGGATGCATCAAATACTTC
TCATGGATCGGAAGAGACTAGAGGGTTGAGATCTAGTTCAAGCACGGCAA
GCACAAAGTCATCAGACGCACTTGCCAAGCGGGATACAAAGATCAAATCC
TCCGTTCCCAGAAGACGCTCCGCTCGGTTATCCGCTGCCAATTTGAACAG
AAATGCTGGCTGA
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