Gvermi3799.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3799.t1
Unique NameGvermi3799.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length292
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4457587..4458462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7244.FBpp0230959
Preferred nameRTCA
PFAMsRTC,RTC_insert
Max annot lvl33208|Metazoa
KEGG koko:K01974
GOsGO:0003674,GO:0003824,GO:0003963,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0007275,GO:0007399,GO:0008150,GO:0009975,GO:0009987,GO:0010721,GO:0010975,GO:0010977,GO:0016874,GO:0016886,GO:0022008,GO:0030154,GO:0031344,GO:0031345,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0065007,GO:0070013,GO:0070570,GO:0070571,GO:0080134,GO:0080135,GO:0120035,GO:0140098,GO:1903034,GO:1903035,GO:2000026
Evalue1.31e-22
EggNOG OGsCOG0430@1|root,KOG3980@2759|Eukaryota,38D3Q@33154|Opisthokonta,3BHM8@33208|Metazoa,3D07H@33213|Bilateria,41X29@6656|Arthropoda,3SGNM@50557|Insecta,44Z2Q@7147|Diptera,45R0N@7214|Drosophilidae
EC6.5.1.4
DescriptionRNA-3'-phosphate cyclase activity. It is involved in the biological process described with RNA processing
COG categoryA
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3799Gvermi3799Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4457587..4458462 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3799.t1.start1Gvermi3799.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4457587..4457589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3799.t1.CDS1Gvermi3799.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4457587..4458462 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3799.t1.exon1Gvermi3799.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4457587..4458462 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3799.t1.stop1Gvermi3799.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4458460..4458462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3799.t1Gvermi3799.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4457587..4458462 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3799.t1 ID=Gvermi3799.t1|Name=Gvermi3799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=292bp
MRIDGGTSVPWSPPSDYVKHVLAPNLRHFGIQLKYDVIRHGFYPQGGGQC
SVIIDKSQCPLVETEDGSPGRVVQSCTLDHRGDITSMKGSLVVHGDEFMQ
LRVVESMMHRAVQVIRRFTRSQEGYPRFDYDDIAVHHIPKPDAKDNSIVL
TLYAVTSCGTVLGSSAIWNVGTSRKQGGKSKQNLSRKGNAKEEKYERWRN
DAAMSGQSAAQDLCDALESMAVVDTHMADQLCVLMAMSNGESRLLVPRPS
KHLLTAVHVIRQFGIAIDLQEVPNSKTWKLTCGGRKTILLD*
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spliced messenger RNA

>Gvermi3799.t1 ID=Gvermi3799.t1|Name=Gvermi3799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=876bp|location=Sequence derived from alignment at ScGOVlb_41:4457587..4458462+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATTGACGGCGGAACGTCCGTGCCTTGGTCACCGCCAAGTGACTA
CGTGAAGCACGTTCTCGCTCCAAACCTTCGTCACTTTGGTATACAGCTAA
AATATGATGTGATTCGACACGGGTTTTACCCACAGGGCGGTGGTCAATGC
TCTGTAATCATTGACAAGTCACAGTGTCCGCTTGTCGAAACAGAGGACGG
AAGCCCAGGACGCGTTGTGCAATCGTGCACTCTTGATCACAGGGGAGATA
TCACAAGTATGAAAGGAAGCCTGGTCGTACACGGAGACGAATTCATGCAG
CTCCGGGTTGTAGAGTCCATGATGCATCGGGCTGTACAGGTGATAAGAAG
GTTTACAAGGAGTCAAGAAGGGTATCCCAGGTTTGATTACGATGATATTG
CGGTGCACCACATTCCAAAACCTGATGCAAAGGACAACTCCATTGTCCTA
ACTCTATACGCGGTCACATCTTGTGGAACAGTGCTAGGCAGCTCTGCCAT
ATGGAATGTCGGGACGAGTCGAAAACAAGGAGGAAAGTCAAAGCAGAATC
TATCGCGAAAGGGAAATGCAAAGGAAGAAAAGTATGAGAGGTGGCGAAAC
GACGCGGCGATGAGTGGCCAATCCGCCGCTCAAGACTTATGCGACGCACT
TGAAAGTATGGCAGTCGTTGATACTCATATGGCGGACCAGCTTTGTGTAT
TGATGGCGATGAGTAACGGAGAATCCCGCCTGCTTGTGCCCCGCCCATCA
AAGCATCTTTTGACTGCAGTTCATGTGATCAGACAGTTTGGAATTGCTAT
TGATTTGCAAGAAGTCCCAAACTCGAAAACTTGGAAACTAACTTGTGGAG
GAAGAAAGACAATCTTGCTGGATTGA
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protein sequence of Gvermi3799.t1

>Gvermi3799.t1 ID=Gvermi3799.t1|Name=Gvermi3799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=292bp
MRIDGGTSVPWSPPSDYVKHVLAPNLRHFGIQLKYDVIRHGFYPQGGGQC
SVIIDKSQCPLVETEDGSPGRVVQSCTLDHRGDITSMKGSLVVHGDEFMQ
LRVVESMMHRAVQVIRRFTRSQEGYPRFDYDDIAVHHIPKPDAKDNSIVL
TLYAVTSCGTVLGSSAIWNVGTSRKQGGKSKQNLSRKGNAKEEKYERWRN
DAAMSGQSAAQDLCDALESMAVVDTHMADQLCVLMAMSNGESRLLVPRPS
KHLLTAVHVIRQFGIAIDLQEVPNSKTWKLTCGGRKTILLD*
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mRNA from alignment at ScGOVlb_41:4457587..4458462+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3799.t1 ID=Gvermi3799.t1|Name=Gvermi3799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=876bp|location=Sequence derived from alignment at ScGOVlb_41:4457587..4458462+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCATTGACGGCGGAACGTCCGTGCCTTGGTCACCGCCAAGTGACTA
CGTGAAGCACGTTCTCGCTCCAAACCTTCGTCACTTTGGTATACAGCTAA
AATATGATGTGATTCGACACGGGTTTTACCCACAGGGCGGTGGTCAATGC
TCTGTAATCATTGACAAGTCACAGTGTCCGCTTGTCGAAACAGAGGACGG
AAGCCCAGGACGCGTTGTGCAATCGTGCACTCTTGATCACAGGGGAGATA
TCACAAGTATGAAAGGAAGCCTGGTCGTACACGGAGACGAATTCATGCAG
CTCCGGGTTGTAGAGTCCATGATGCATCGGGCTGTACAGGTGATAAGAAG
GTTTACAAGGAGTCAAGAAGGGTATCCCAGGTTTGATTACGATGATATTG
CGGTGCACCACATTCCAAAACCTGATGCAAAGGACAACTCCATTGTCCTA
ACTCTATACGCGGTCACATCTTGTGGAACAGTGCTAGGCAGCTCTGCCAT
ATGGAATGTCGGGACGAGTCGAAAACAAGGAGGAAAGTCAAAGCAGAATC
TATCGCGAAAGGGAAATGCAAAGGAAGAAAAGTATGAGAGGTGGCGAAAC
GACGCGGCGATGAGTGGCCAATCCGCCGCTCAAGACTTATGCGACGCACT
TGAAAGTATGGCAGTCGTTGATACTCATATGGCGGACCAGCTTTGTGTAT
TGATGGCGATGAGTAACGGAGAATCCCGCCTGCTTGTGCCCCGCCCATCA
AAGCATCTTTTGACTGCAGTTCATGTGATCAGACAGTTTGGAATTGCTAT
TGATTTGCAAGAAGTCCCAAACTCGAAAACTTGGAAACTAACTTGTGGAG
GAAGAAAGACAATCTTGCTGGATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4457587..4458462+

>Gvermi3799.t1 ID=Gvermi3799.t1|Name=Gvermi3799.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=876bp|location=Sequence derived from alignment at ScGOVlb_41:4457587..4458462+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCATTGACGGCGGAACGTCCGTGCCTTGGTCACCGCCAAGTGACTA
CGTGAAGCACGTTCTCGCTCCAAACCTTCGTCACTTTGGTATACAGCTAA
AATATGATGTGATTCGACACGGGTTTTACCCACAGGGCGGTGGTCAATGC
TCTGTAATCATTGACAAGTCACAGTGTCCGCTTGTCGAAACAGAGGACGG
AAGCCCAGGACGCGTTGTGCAATCGTGCACTCTTGATCACAGGGGAGATA
TCACAAGTATGAAAGGAAGCCTGGTCGTACACGGAGACGAATTCATGCAG
CTCCGGGTTGTAGAGTCCATGATGCATCGGGCTGTACAGGTGATAAGAAG
GTTTACAAGGAGTCAAGAAGGGTATCCCAGGTTTGATTACGATGATATTG
CGGTGCACCACATTCCAAAACCTGATGCAAAGGACAACTCCATTGTCCTA
ACTCTATACGCGGTCACATCTTGTGGAACAGTGCTAGGCAGCTCTGCCAT
ATGGAATGTCGGGACGAGTCGAAAACAAGGAGGAAAGTCAAAGCAGAATC
TATCGCGAAAGGGAAATGCAAAGGAAGAAAAGTATGAGAGGTGGCGAAAC
GACGCGGCGATGAGTGGCCAATCCGCCGCTCAAGACTTATGCGACGCACT
TGAAAGTATGGCAGTCGTTGATACTCATATGGCGGACCAGCTTTGTGTAT
TGATGGCGATGAGTAACGGAGAATCCCGCCTGCTTGTGCCCCGCCCATCA
AAGCATCTTTTGACTGCAGTTCATGTGATCAGACAGTTTGGAATTGCTAT
TGATTTGCAAGAAGTCCCAAACTCGAAAACTTGGAAACTAACTTGTGGAG
GAAGAAAGACAATCTTGCTGGATTGA
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