Gvermi3797.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3797.t1
Unique NameGvermi3797.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length201
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4415180..4415782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERN09626
PFAMsAcetyltransf_1
Max annot lvl35493|Streptophyta
KEGG rclassRC00004,RC00166
KEGG koko:K00621
KEGG ReactionR02058
KEGG Pathwayko00520,map00520
GOsGO:0003674,GO:0003824,GO:0004343,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006040,GO:0006044,GO:0006047,GO:0006048,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009987,GO:0012505,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0018130,GO:0019438,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046349,GO:0046483,GO:0055086,GO:0071704,GO:1901071,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
Evalue3.45e-37
EggNOG OGsCOG0454@1|root,KOG3396@2759|Eukaryota,37U5I@33090|Viridiplantae,3GI5M@35493|Streptophyta
EC2.3.1.4
DescriptionGlucosamine 6-phosphate
COG categoryM
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3797Gvermi3797Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4415180..4415782 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3797.t1.stop1Gvermi3797.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4415180..4415182 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3797.t1.CDS1Gvermi3797.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4415180..4415782 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3797.t1.exon1Gvermi3797.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4415180..4415782 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3797.t1.start1Gvermi3797.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4415780..4415782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3797.t1Gvermi3797.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4415180..4415782 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3797.t1 ID=Gvermi3797.t1|Name=Gvermi3797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=201bp
MFSVSRHYSSKTTARLFLKALRAVRTSTPPSYAARACCSGRASLFVMDSA
VNDQPSSQPICIRRIEEADLERGFFDVLSQLTDAPPLSPEKFGRLLRVQR
ELDIQLTLVAVQGGKVLGTGSVLVEPKFIRGARPAGHIEDVVTDASLRGK
GVGKQIIERLVEYAKEKGCYKVILDCSHHNVEFYEKCGLKQMGRQMGKYF
*
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spliced messenger RNA

>Gvermi3797.t1 ID=Gvermi3797.t1|Name=Gvermi3797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=603bp|location=Sequence derived from alignment at ScGOVlb_41:4415180..4415782- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAGCGTATCGCGCCATTATTCATCAAAAACCACAGCGCGCTTATT
TCTCAAAGCGCTGCGTGCCGTCCGCACTTCAACCCCGCCCTCGTATGCTG
CCAGGGCATGCTGTTCAGGTCGAGCGAGCTTGTTCGTGATGGACTCTGCT
GTCAATGACCAACCTTCTTCACAGCCGATTTGCATCCGACGCATCGAGGA
GGCAGACCTTGAGCGCGGTTTTTTTGATGTTTTATCGCAGCTGACTGACG
CGCCTCCTCTTTCGCCAGAAAAGTTCGGGAGGCTTTTGCGTGTGCAGCGG
GAGTTAGATATTCAGCTTACGCTGGTTGCAGTTCAAGGTGGAAAAGTTTT
GGGGACAGGATCTGTTTTGGTTGAACCAAAGTTTATTCGCGGCGCGAGAC
CTGCGGGGCACATCGAAGATGTTGTCACGGATGCCTCGTTAAGAGGAAAG
GGTGTTGGGAAACAGATTATTGAAAGATTGGTGGAGTATGCGAAAGAGAA
GGGTTGCTACAAAGTTATTTTGGATTGCAGTCATCACAATGTTGAGTTTT
ATGAGAAATGTGGCCTGAAACAGATGGGGCGGCAGATGGGGAAATATTTC
TGA
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protein sequence of Gvermi3797.t1

>Gvermi3797.t1 ID=Gvermi3797.t1|Name=Gvermi3797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=201bp
MFSVSRHYSSKTTARLFLKALRAVRTSTPPSYAARACCSGRASLFVMDSA
VNDQPSSQPICIRRIEEADLERGFFDVLSQLTDAPPLSPEKFGRLLRVQR
ELDIQLTLVAVQGGKVLGTGSVLVEPKFIRGARPAGHIEDVVTDASLRGK
GVGKQIIERLVEYAKEKGCYKVILDCSHHNVEFYEKCGLKQMGRQMGKYF
*
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mRNA from alignment at ScGOVlb_41:4415180..4415782-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3797.t1 ID=Gvermi3797.t1|Name=Gvermi3797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=603bp|location=Sequence derived from alignment at ScGOVlb_41:4415180..4415782- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCAGCGTATCGCGCCATTATTCATCAAAAACCACAGCGCGCTTATT
TCTCAAAGCGCTGCGTGCCGTCCGCACTTCAACCCCGCCCTCGTATGCTG
CCAGGGCATGCTGTTCAGGTCGAGCGAGCTTGTTCGTGATGGACTCTGCT
GTCAATGACCAACCTTCTTCACAGCCGATTTGCATCCGACGCATCGAGGA
GGCAGACCTTGAGCGCGGTTTTTTTGATGTTTTATCGCAGCTGACTGACG
CGCCTCCTCTTTCGCCAGAAAAGTTCGGGAGGCTTTTGCGTGTGCAGCGG
GAGTTAGATATTCAGCTTACGCTGGTTGCAGTTCAAGGTGGAAAAGTTTT
GGGGACAGGATCTGTTTTGGTTGAACCAAAGTTTATTCGCGGCGCGAGAC
CTGCGGGGCACATCGAAGATGTTGTCACGGATGCCTCGTTAAGAGGAAAG
GGTGTTGGGAAACAGATTATTGAAAGATTGGTGGAGTATGCGAAAGAGAA
GGGTTGCTACAAAGTTATTTTGGATTGCAGTCATCACAATGTTGAGTTTT
ATGAGAAATGTGGCCTGAAACAGATGGGGCGGCAGATGGGGAAATATTTC
TGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4415180..4415782-

>Gvermi3797.t1 ID=Gvermi3797.t1|Name=Gvermi3797.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=603bp|location=Sequence derived from alignment at ScGOVlb_41:4415180..4415782- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCAGCGTATCGCGCCATTATTCATCAAAAACCACAGCGCGCTTATT
TCTCAAAGCGCTGCGTGCCGTCCGCACTTCAACCCCGCCCTCGTATGCTG
CCAGGGCATGCTGTTCAGGTCGAGCGAGCTTGTTCGTGATGGACTCTGCT
GTCAATGACCAACCTTCTTCACAGCCGATTTGCATCCGACGCATCGAGGA
GGCAGACCTTGAGCGCGGTTTTTTTGATGTTTTATCGCAGCTGACTGACG
CGCCTCCTCTTTCGCCAGAAAAGTTCGGGAGGCTTTTGCGTGTGCAGCGG
GAGTTAGATATTCAGCTTACGCTGGTTGCAGTTCAAGGTGGAAAAGTTTT
GGGGACAGGATCTGTTTTGGTTGAACCAAAGTTTATTCGCGGCGCGAGAC
CTGCGGGGCACATCGAAGATGTTGTCACGGATGCCTCGTTAAGAGGAAAG
GGTGTTGGGAAACAGATTATTGAAAGATTGGTGGAGTATGCGAAAGAGAA
GGGTTGCTACAAAGTTATTTTGGATTGCAGTCATCACAATGTTGAGTTTT
ATGAGAAATGTGGCCTGAAACAGATGGGGCGGCAGATGGGGAAATATTTC
TGA
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