Gvermi3751.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3751.t1
Unique NameGvermi3751.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4181538..4182611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog588596.U9U859
Preferred nameDOM34
PFAMseRF1_1,eRF1_2,eRF1_3
Max annot lvl4751|Fungi
KEGG koko:K06965
KEGG Pathwayko03015,map03015
GOsGO:0000956,GO:0002181,GO:0002184,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006415,GO:0006417,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006986,GO:0006996,GO:0007154,GO:0007165,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010948,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016787,GO:0016788,GO:0019222,GO:0019439,GO:0019538,GO:0022411,GO:0023052,GO:0030968,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0033554,GO:0034248,GO:0034250,GO:0034620,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0035966,GO:0035967,GO:0042221,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0045727,GO:0045786,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070316,GO:0070317,GO:0070481,GO:0070651,GO:0070887,GO:0070966,GO:0071310,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903008,GO:1990533,GO:2000112
Evalue1.07e-125
EggNOG OGsCOG1537@1|root,KOG2869@2759|Eukaryota,38FIS@33154|Opisthokonta,3NUSJ@4751|Fungi
DescriptionMay function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs
COG categoryJ
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3751Gvermi3751Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4181538..4182611 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3751.t1.stop1Gvermi3751.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4181538..4181540 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3751.t1.CDS1Gvermi3751.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4181538..4182611 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3751.t1.exon1Gvermi3751.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4181538..4182611 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3751.t1.start1Gvermi3751.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4182609..4182611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3751.t1Gvermi3751.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4181538..4182611 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3751.t1 ID=Gvermi3751.t1|Name=Gvermi3751.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=358bp
MWHVYNLLSVGDKLRCSTIRKVQSETATGSVSAQRKRLTLTIEVQSFDFD
ASVCQMRVAGRVVSENQHVSSGSHHTLELEPHRAFTLFKEAWDAVHMEHL
NTSLDPHTDADLGAVVMQEGLAHVLLVSHSLTITRARIETAIPRKGKNAL
YNRDNAMNKFFGDVFRSLLQSLELSRLKVLLIASPGFVKDEFFKFAQLEA
SRQDLRDFIDNKSKIVLCHSSSGHKHAFQEVLSRPELQTRLASTKAVAEV
RVLDDFFEMMHKDPDRAVYGPAHVKFAAEMGAVHQLLVTDKLFRAADVHL
RKKYVSLLESVEQTGSTVVRFSSEHVTGARLDSMTGVAAILRFPLAGLDE
IDPSAGL*
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spliced messenger RNA

>Gvermi3751.t1 ID=Gvermi3751.t1|Name=Gvermi3751.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at ScGOVlb_41:4181538..4182611- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCATGTATATAACTTGCTAAGTGTGGGAGACAAACTGCGATGCTC
GACAATTCGGAAGGTACAATCCGAGACTGCCACGGGCAGTGTATCTGCGC
AAAGAAAGAGACTGACTTTGACCATAGAAGTCCAGTCTTTCGACTTCGAC
GCGTCAGTGTGTCAGATGCGTGTCGCTGGTCGCGTCGTCTCGGAGAATCA
ACATGTCTCCTCAGGATCGCATCACACACTGGAGTTGGAACCTCATCGTG
CTTTCACCCTTTTTAAGGAGGCGTGGGATGCAGTGCATATGGAACACTTG
AATACTTCACTGGACCCGCATACAGATGCCGATTTGGGGGCCGTTGTTAT
GCAGGAAGGGCTCGCTCATGTCTTATTGGTGTCACATTCTCTAACAATCA
CTCGCGCCAGAATAGAAACAGCAATCCCACGTAAGGGAAAGAATGCCCTT
TACAATAGAGATAACGCTATGAACAAGTTTTTCGGCGACGTGTTCAGATC
GCTTTTGCAATCGTTAGAACTATCTCGTTTGAAAGTGCTGCTTATCGCCT
CTCCTGGATTCGTGAAAGATGAATTCTTCAAATTTGCACAGTTGGAGGCG
TCTCGTCAGGATCTGCGAGACTTCATAGATAACAAGTCGAAGATTGTACT
TTGTCATTCCTCCTCAGGACACAAGCATGCATTTCAAGAGGTGCTGTCAC
GACCAGAATTACAGACACGTCTTGCAAGCACCAAGGCTGTAGCAGAAGTT
CGAGTGCTTGACGATTTTTTCGAGATGATGCACAAAGACCCAGACCGTGC
AGTTTACGGTCCGGCGCATGTGAAATTTGCTGCGGAGATGGGAGCAGTAC
ACCAACTGCTTGTTACCGACAAGCTATTTCGAGCTGCTGATGTTCATCTA
AGAAAGAAGTACGTATCCCTTCTCGAAAGCGTCGAACAAACAGGCTCAAC
AGTCGTAAGATTCTCCTCGGAGCATGTTACAGGGGCACGTCTGGATTCCA
TGACAGGTGTAGCGGCAATTTTGCGTTTTCCTCTTGCTGGTTTAGACGAA
ATAGATCCTTCAGCAGGGCTTTGA
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protein sequence of Gvermi3751.t1

>Gvermi3751.t1 ID=Gvermi3751.t1|Name=Gvermi3751.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=358bp
MWHVYNLLSVGDKLRCSTIRKVQSETATGSVSAQRKRLTLTIEVQSFDFD
ASVCQMRVAGRVVSENQHVSSGSHHTLELEPHRAFTLFKEAWDAVHMEHL
NTSLDPHTDADLGAVVMQEGLAHVLLVSHSLTITRARIETAIPRKGKNAL
YNRDNAMNKFFGDVFRSLLQSLELSRLKVLLIASPGFVKDEFFKFAQLEA
SRQDLRDFIDNKSKIVLCHSSSGHKHAFQEVLSRPELQTRLASTKAVAEV
RVLDDFFEMMHKDPDRAVYGPAHVKFAAEMGAVHQLLVTDKLFRAADVHL
RKKYVSLLESVEQTGSTVVRFSSEHVTGARLDSMTGVAAILRFPLAGLDE
IDPSAGL*
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mRNA from alignment at ScGOVlb_41:4181538..4182611-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3751.t1 ID=Gvermi3751.t1|Name=Gvermi3751.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at ScGOVlb_41:4181538..4182611- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGCATGTATATAACTTGCTAAGTGTGGGAGACAAACTGCGATGCTC
GACAATTCGGAAGGTACAATCCGAGACTGCCACGGGCAGTGTATCTGCGC
AAAGAAAGAGACTGACTTTGACCATAGAAGTCCAGTCTTTCGACTTCGAC
GCGTCAGTGTGTCAGATGCGTGTCGCTGGTCGCGTCGTCTCGGAGAATCA
ACATGTCTCCTCAGGATCGCATCACACACTGGAGTTGGAACCTCATCGTG
CTTTCACCCTTTTTAAGGAGGCGTGGGATGCAGTGCATATGGAACACTTG
AATACTTCACTGGACCCGCATACAGATGCCGATTTGGGGGCCGTTGTTAT
GCAGGAAGGGCTCGCTCATGTCTTATTGGTGTCACATTCTCTAACAATCA
CTCGCGCCAGAATAGAAACAGCAATCCCACGTAAGGGAAAGAATGCCCTT
TACAATAGAGATAACGCTATGAACAAGTTTTTCGGCGACGTGTTCAGATC
GCTTTTGCAATCGTTAGAACTATCTCGTTTGAAAGTGCTGCTTATCGCCT
CTCCTGGATTCGTGAAAGATGAATTCTTCAAATTTGCACAGTTGGAGGCG
TCTCGTCAGGATCTGCGAGACTTCATAGATAACAAGTCGAAGATTGTACT
TTGTCATTCCTCCTCAGGACACAAGCATGCATTTCAAGAGGTGCTGTCAC
GACCAGAATTACAGACACGTCTTGCAAGCACCAAGGCTGTAGCAGAAGTT
CGAGTGCTTGACGATTTTTTCGAGATGATGCACAAAGACCCAGACCGTGC
AGTTTACGGTCCGGCGCATGTGAAATTTGCTGCGGAGATGGGAGCAGTAC
ACCAACTGCTTGTTACCGACAAGCTATTTCGAGCTGCTGATGTTCATCTA
AGAAAGAAGTACGTATCCCTTCTCGAAAGCGTCGAACAAACAGGCTCAAC
AGTCGTAAGATTCTCCTCGGAGCATGTTACAGGGGCACGTCTGGATTCCA
TGACAGGTGTAGCGGCAATTTTGCGTTTTCCTCTTGCTGGTTTAGACGAA
ATAGATCCTTCAGCAGGGCTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4181538..4182611-

>Gvermi3751.t1 ID=Gvermi3751.t1|Name=Gvermi3751.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1074bp|location=Sequence derived from alignment at ScGOVlb_41:4181538..4182611- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGCATGTATATAACTTGCTAAGTGTGGGAGACAAACTGCGATGCTC
GACAATTCGGAAGGTACAATCCGAGACTGCCACGGGCAGTGTATCTGCGC
AAAGAAAGAGACTGACTTTGACCATAGAAGTCCAGTCTTTCGACTTCGAC
GCGTCAGTGTGTCAGATGCGTGTCGCTGGTCGCGTCGTCTCGGAGAATCA
ACATGTCTCCTCAGGATCGCATCACACACTGGAGTTGGAACCTCATCGTG
CTTTCACCCTTTTTAAGGAGGCGTGGGATGCAGTGCATATGGAACACTTG
AATACTTCACTGGACCCGCATACAGATGCCGATTTGGGGGCCGTTGTTAT
GCAGGAAGGGCTCGCTCATGTCTTATTGGTGTCACATTCTCTAACAATCA
CTCGCGCCAGAATAGAAACAGCAATCCCACGTAAGGGAAAGAATGCCCTT
TACAATAGAGATAACGCTATGAACAAGTTTTTCGGCGACGTGTTCAGATC
GCTTTTGCAATCGTTAGAACTATCTCGTTTGAAAGTGCTGCTTATCGCCT
CTCCTGGATTCGTGAAAGATGAATTCTTCAAATTTGCACAGTTGGAGGCG
TCTCGTCAGGATCTGCGAGACTTCATAGATAACAAGTCGAAGATTGTACT
TTGTCATTCCTCCTCAGGACACAAGCATGCATTTCAAGAGGTGCTGTCAC
GACCAGAATTACAGACACGTCTTGCAAGCACCAAGGCTGTAGCAGAAGTT
CGAGTGCTTGACGATTTTTTCGAGATGATGCACAAAGACCCAGACCGTGC
AGTTTACGGTCCGGCGCATGTGAAATTTGCTGCGGAGATGGGAGCAGTAC
ACCAACTGCTTGTTACCGACAAGCTATTTCGAGCTGCTGATGTTCATCTA
AGAAAGAAGTACGTATCCCTTCTCGAAAGCGTCGAACAAACAGGCTCAAC
AGTCGTAAGATTCTCCTCGGAGCATGTTACAGGGGCACGTCTGGATTCCA
TGACAGGTGTAGCGGCAATTTTGCGTTTTCCTCTTGCTGGTTTAGACGAA
ATAGATCCTTCAGCAGGGCTTTGA
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