Gvermi3698.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3698.t1
Unique NameGvermi3698.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4034073..4034999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704932.1
Preferred nameCYCD1
PFAMsCyclin_C,Cyclin_N
Max annot lvl2759|Eukaryota
KEGG koko:K05286
KEGG ReactionR05922
KEGG Pathwayko00563,ko01100,map00563,map01100
KEGG ModuleM00065
GOsGO:0000079,GO:0000307,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005911,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009506,GO:0009628,GO:0009651,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016538,GO:0016567,GO:0016740,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019887,GO:0019941,GO:0030054,GO:0030163,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032446,GO:0032991,GO:0033674,GO:0036211,GO:0042325,GO:0042327,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043549,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051603,GO:0051726,GO:0055044,GO:0060255,GO:0061630,GO:0061659,GO:0061695,GO:0065007,GO:0065009,GO:0070647,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0098772,GO:0140096,GO:1901407,GO:1901409,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990234,GO:2000112,GO:2001141
Evalue1.59e-34
EggNOG OGsCOG5333@1|root,KOG0835@2759|Eukaryota
Descriptionpositive regulation of phosphorylation of RNA polymerase II C-terminal domain
COG categoryDKL
CAZyGT22
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3698Gvermi3698Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4034073..4034999 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3698.t1.start1Gvermi3698.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4034073..4034075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3698.t1.CDS1Gvermi3698.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4034073..4034999 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3698.t1.exon1Gvermi3698.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4034073..4034999 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3698.t1.stop1Gvermi3698.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4034997..4034999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3698.t1Gvermi3698.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4034073..4034999 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3698.t1 ID=Gvermi3698.t1|Name=Gvermi3698.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=309bp
MLLHRFYTQVSIIAHNTIWAAGACIIVSAKLADEPRPLRHVSNVIYDRLV
DRQNVCVQTVSMAGRLCRRPFNFYGAEGYDWKLALIETERHVLKELGFRV
TVELPHNFVLVFVNTLRDKAGAPGWSEGQGSFHTLLQAAWDYANDLLIDQ
ICVREAPEALACACISLATTHCEGSLPDGWENVLGSSTDECERLVLYFQN
LYKRPVEMSCYRNHSKSAVLEKFSTKQTGDHQSGEASGQNCRKNKRPFDR
EEKRNDSSKGSPEARSTGEASEIQENGDRDQSGEKHSNGLSKPGRLQRKR
RRFEDAVS*
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spliced messenger RNA

>Gvermi3698.t1 ID=Gvermi3698.t1|Name=Gvermi3698.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=927bp|location=Sequence derived from alignment at ScGOVlb_41:4034073..4034999+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACTACACCGCTTTTACACACAGGTCTCAATCATTGCCCACAACAC
TATTTGGGCCGCTGGGGCTTGTATCATTGTGTCTGCCAAGCTTGCAGACG
AGCCGCGGCCGCTGCGTCACGTATCCAATGTCATCTACGACCGTCTCGTT
GATCGCCAAAATGTTTGCGTTCAAACTGTTAGCATGGCAGGTCGTCTATG
TCGCCGTCCATTTAACTTCTACGGTGCAGAAGGGTATGACTGGAAGCTAG
CTCTTATCGAGACTGAGCGCCATGTTCTCAAAGAGCTTGGCTTCCGTGTC
ACGGTAGAGCTTCCGCACAATTTTGTACTTGTGTTTGTCAACACTCTTCG
TGACAAGGCAGGGGCTCCGGGTTGGTCAGAAGGCCAAGGTTCCTTCCACA
CTTTGTTGCAAGCAGCATGGGATTACGCCAATGATTTGCTCATCGATCAA
ATATGCGTGCGCGAAGCGCCGGAAGCACTAGCATGTGCGTGCATTTCTCT
GGCAACAACGCACTGTGAAGGCAGCTTGCCCGACGGATGGGAGAATGTTC
TCGGGTCCAGTACTGATGAGTGTGAACGTCTGGTGCTGTACTTTCAGAAT
CTATATAAACGTCCAGTTGAGATGTCGTGTTATAGAAACCATTCCAAGTC
TGCTGTTCTTGAAAAGTTCTCAACGAAACAGACGGGTGATCATCAATCAG
GGGAAGCCTCGGGCCAAAATTGTCGAAAAAACAAGAGACCGTTTGATAGA
GAAGAAAAAAGAAACGATAGTTCAAAAGGTTCTCCTGAAGCTCGCAGTAC
GGGAGAAGCGTCCGAAATCCAAGAAAATGGAGACCGAGATCAATCTGGTG
AAAAGCATTCGAACGGTCTATCAAAGCCAGGACGGTTACAAAGAAAACGA
CGACGTTTTGAAGATGCAGTGTCATAA
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protein sequence of Gvermi3698.t1

>Gvermi3698.t1 ID=Gvermi3698.t1|Name=Gvermi3698.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=309bp
MLLHRFYTQVSIIAHNTIWAAGACIIVSAKLADEPRPLRHVSNVIYDRLV
DRQNVCVQTVSMAGRLCRRPFNFYGAEGYDWKLALIETERHVLKELGFRV
TVELPHNFVLVFVNTLRDKAGAPGWSEGQGSFHTLLQAAWDYANDLLIDQ
ICVREAPEALACACISLATTHCEGSLPDGWENVLGSSTDECERLVLYFQN
LYKRPVEMSCYRNHSKSAVLEKFSTKQTGDHQSGEASGQNCRKNKRPFDR
EEKRNDSSKGSPEARSTGEASEIQENGDRDQSGEKHSNGLSKPGRLQRKR
RRFEDAVS*
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mRNA from alignment at ScGOVlb_41:4034073..4034999+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3698.t1 ID=Gvermi3698.t1|Name=Gvermi3698.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=927bp|location=Sequence derived from alignment at ScGOVlb_41:4034073..4034999+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTACTACACCGCTTTTACACACAGGTCTCAATCATTGCCCACAACAC
TATTTGGGCCGCTGGGGCTTGTATCATTGTGTCTGCCAAGCTTGCAGACG
AGCCGCGGCCGCTGCGTCACGTATCCAATGTCATCTACGACCGTCTCGTT
GATCGCCAAAATGTTTGCGTTCAAACTGTTAGCATGGCAGGTCGTCTATG
TCGCCGTCCATTTAACTTCTACGGTGCAGAAGGGTATGACTGGAAGCTAG
CTCTTATCGAGACTGAGCGCCATGTTCTCAAAGAGCTTGGCTTCCGTGTC
ACGGTAGAGCTTCCGCACAATTTTGTACTTGTGTTTGTCAACACTCTTCG
TGACAAGGCAGGGGCTCCGGGTTGGTCAGAAGGCCAAGGTTCCTTCCACA
CTTTGTTGCAAGCAGCATGGGATTACGCCAATGATTTGCTCATCGATCAA
ATATGCGTGCGCGAAGCGCCGGAAGCACTAGCATGTGCGTGCATTTCTCT
GGCAACAACGCACTGTGAAGGCAGCTTGCCCGACGGATGGGAGAATGTTC
TCGGGTCCAGTACTGATGAGTGTGAACGTCTGGTGCTGTACTTTCAGAAT
CTATATAAACGTCCAGTTGAGATGTCGTGTTATAGAAACCATTCCAAGTC
TGCTGTTCTTGAAAAGTTCTCAACGAAACAGACGGGTGATCATCAATCAG
GGGAAGCCTCGGGCCAAAATTGTCGAAAAAACAAGAGACCGTTTGATAGA
GAAGAAAAAAGAAACGATAGTTCAAAAGGTTCTCCTGAAGCTCGCAGTAC
GGGAGAAGCGTCCGAAATCCAAGAAAATGGAGACCGAGATCAATCTGGTG
AAAAGCATTCGAACGGTCTATCAAAGCCAGGACGGTTACAAAGAAAACGA
CGACGTTTTGAAGATGCAGTGTCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4034073..4034999+

>Gvermi3698.t1 ID=Gvermi3698.t1|Name=Gvermi3698.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=927bp|location=Sequence derived from alignment at ScGOVlb_41:4034073..4034999+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTACTACACCGCTTTTACACACAGGTCTCAATCATTGCCCACAACAC
TATTTGGGCCGCTGGGGCTTGTATCATTGTGTCTGCCAAGCTTGCAGACG
AGCCGCGGCCGCTGCGTCACGTATCCAATGTCATCTACGACCGTCTCGTT
GATCGCCAAAATGTTTGCGTTCAAACTGTTAGCATGGCAGGTCGTCTATG
TCGCCGTCCATTTAACTTCTACGGTGCAGAAGGGTATGACTGGAAGCTAG
CTCTTATCGAGACTGAGCGCCATGTTCTCAAAGAGCTTGGCTTCCGTGTC
ACGGTAGAGCTTCCGCACAATTTTGTACTTGTGTTTGTCAACACTCTTCG
TGACAAGGCAGGGGCTCCGGGTTGGTCAGAAGGCCAAGGTTCCTTCCACA
CTTTGTTGCAAGCAGCATGGGATTACGCCAATGATTTGCTCATCGATCAA
ATATGCGTGCGCGAAGCGCCGGAAGCACTAGCATGTGCGTGCATTTCTCT
GGCAACAACGCACTGTGAAGGCAGCTTGCCCGACGGATGGGAGAATGTTC
TCGGGTCCAGTACTGATGAGTGTGAACGTCTGGTGCTGTACTTTCAGAAT
CTATATAAACGTCCAGTTGAGATGTCGTGTTATAGAAACCATTCCAAGTC
TGCTGTTCTTGAAAAGTTCTCAACGAAACAGACGGGTGATCATCAATCAG
GGGAAGCCTCGGGCCAAAATTGTCGAAAAAACAAGAGACCGTTTGATAGA
GAAGAAAAAAGAAACGATAGTTCAAAAGGTTCTCCTGAAGCTCGCAGTAC
GGGAGAAGCGTCCGAAATCCAAGAAAATGGAGACCGAGATCAATCTGGTG
AAAAGCATTCGAACGGTCTATCAAAGCCAGGACGGTTACAAAGAAAACGA
CGACGTTTTGAAGATGCAGTGTCATAA
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