Gvermi3695.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3695.t1
Unique NameGvermi3695.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:4030073..4031212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_08500T0
PFAMsNIF,ubiquitin
Max annot lvl4751|Fungi
KEGG koko:K17618
Evalue2.34e-80
EggNOG OGsCOG5190@1|root,KOG1605@2759|Eukaryota,38FHF@33154|Opisthokonta,3P2C1@4751|Fungi
EC3.1.3.16
DescriptionHAD subfamily IIID h
COG categoryK
BRITEko00000,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3695Gvermi3695Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 4030073..4031212 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3695.t1.start1Gvermi3695.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 4030073..4030075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3695.t1.CDS1Gvermi3695.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 4030073..4031212 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3695.t1.exon1Gvermi3695.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 4030073..4031212 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3695.t1.stop1Gvermi3695.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 4031210..4031212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3695.t1Gvermi3695.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 4030073..4031212 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3695.t1 ID=Gvermi3695.t1|Name=Gvermi3695.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=380bp
MTTNVKQPRMEPDLQTCPPATSARSSAHHSSASPHDTRLVQDEDELFLHV
KWSRSTYVVELTPQQTVTDLKQSLFQLTDVLPKRQKILGLPSPPACQLHD
GVPLGQLPLKPGHNIIMVGTREEDIDALNKNYLSHHAEMLDEVDCDMLDD
PAKLRHAFRNKLERRIESTEFRIMNPPRPGKKLLVLDLDYTLFDCKGTSP
IIADWARPGLHRLLASAYCSYDIVIWSQTSWRWLEAKLTGLSMLFASNYK
LAFVLDRSSMFSIKFQNENLTRRHEVKALEIIWRRFPQWNATNTIHIDDL
SKNFALNPQSGLQIQPFRRADVARYHDRELYLLEVYLKLLASGENDFTTL
DHRTWKRYAWDRRPLDCMDAEVNQGPQRN*
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spliced messenger RNA

>Gvermi3695.t1 ID=Gvermi3695.t1|Name=Gvermi3695.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at ScGOVlb_41:4030073..4031212+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTACCAATGTGAAACAACCTCGAATGGAGCCTGATTTGCAGACCTG
TCCGCCAGCCACCAGTGCGCGCAGTAGCGCCCACCACTCTTCAGCCTCCC
CACACGACACCCGGCTGGTACAAGACGAAGACGAACTCTTCCTGCACGTC
AAATGGAGCCGTTCCACATACGTCGTCGAGCTCACCCCGCAGCAAACCGT
CACCGACCTCAAGCAAAGTCTTTTTCAGCTCACAGATGTGTTGCCAAAGC
GTCAGAAGATTCTTGGTCTTCCTTCGCCACCCGCGTGCCAGCTACACGAC
GGGGTACCTTTGGGCCAACTGCCCCTCAAGCCCGGCCACAACATCATCAT
GGTCGGTACGCGTGAGGAGGATATTGATGCGCTCAACAAAAATTATCTGT
CTCATCACGCGGAAATGCTCGATGAGGTCGACTGTGACATGCTTGATGAC
CCGGCCAAGTTGCGACACGCGTTTCGGAACAAACTGGAGCGTCGTATCGA
GTCAACAGAGTTTCGCATCATGAACCCCCCGAGGCCGGGCAAGAAATTGC
TAGTTTTGGATTTAGACTACACCCTGTTTGACTGCAAAGGAACAAGCCCG
ATAATTGCCGATTGGGCGCGCCCTGGTTTGCATCGTTTGTTAGCGTCTGC
GTATTGTTCATATGATATAGTTATATGGTCGCAGACGTCATGGCGCTGGT
TGGAAGCAAAGCTAACCGGTTTGTCTATGTTGTTCGCTTCCAATTACAAA
CTGGCTTTCGTGTTGGACAGAAGCTCCATGTTCAGCATCAAGTTTCAGAA
CGAAAATCTCACTCGTCGTCATGAGGTCAAAGCTCTCGAAATCATCTGGC
GCCGTTTCCCGCAATGGAATGCTACCAACACTATTCATATTGATGACCTT
TCCAAGAACTTCGCCCTCAACCCTCAAAGTGGGTTACAAATCCAGCCTTT
CCGAAGGGCAGATGTGGCCCGTTATCACGACAGAGAGCTTTATTTACTTG
AGGTGTACCTCAAGCTTTTAGCGTCTGGGGAGAATGATTTCACAACTTTG
GACCATAGAACATGGAAAAGGTACGCCTGGGACCGCAGGCCCTTGGACTG
CATGGATGCGGAAGTTAATCAAGGCCCGCAAAGGAACTGA
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protein sequence of Gvermi3695.t1

>Gvermi3695.t1 ID=Gvermi3695.t1|Name=Gvermi3695.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=380bp
MTTNVKQPRMEPDLQTCPPATSARSSAHHSSASPHDTRLVQDEDELFLHV
KWSRSTYVVELTPQQTVTDLKQSLFQLTDVLPKRQKILGLPSPPACQLHD
GVPLGQLPLKPGHNIIMVGTREEDIDALNKNYLSHHAEMLDEVDCDMLDD
PAKLRHAFRNKLERRIESTEFRIMNPPRPGKKLLVLDLDYTLFDCKGTSP
IIADWARPGLHRLLASAYCSYDIVIWSQTSWRWLEAKLTGLSMLFASNYK
LAFVLDRSSMFSIKFQNENLTRRHEVKALEIIWRRFPQWNATNTIHIDDL
SKNFALNPQSGLQIQPFRRADVARYHDRELYLLEVYLKLLASGENDFTTL
DHRTWKRYAWDRRPLDCMDAEVNQGPQRN*
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mRNA from alignment at ScGOVlb_41:4030073..4031212+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3695.t1 ID=Gvermi3695.t1|Name=Gvermi3695.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at ScGOVlb_41:4030073..4031212+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTACCAATGTGAAACAACCTCGAATGGAGCCTGATTTGCAGACCTG
TCCGCCAGCCACCAGTGCGCGCAGTAGCGCCCACCACTCTTCAGCCTCCC
CACACGACACCCGGCTGGTACAAGACGAAGACGAACTCTTCCTGCACGTC
AAATGGAGCCGTTCCACATACGTCGTCGAGCTCACCCCGCAGCAAACCGT
CACCGACCTCAAGCAAAGTCTTTTTCAGCTCACAGATGTGTTGCCAAAGC
GTCAGAAGATTCTTGGTCTTCCTTCGCCACCCGCGTGCCAGCTACACGAC
GGGGTACCTTTGGGCCAACTGCCCCTCAAGCCCGGCCACAACATCATCAT
GGTCGGTACGCGTGAGGAGGATATTGATGCGCTCAACAAAAATTATCTGT
CTCATCACGCGGAAATGCTCGATGAGGTCGACTGTGACATGCTTGATGAC
CCGGCCAAGTTGCGACACGCGTTTCGGAACAAACTGGAGCGTCGTATCGA
GTCAACAGAGTTTCGCATCATGAACCCCCCGAGGCCGGGCAAGAAATTGC
TAGTTTTGGATTTAGACTACACCCTGTTTGACTGCAAAGGAACAAGCCCG
ATAATTGCCGATTGGGCGCGCCCTGGTTTGCATCGTTTGTTAGCGTCTGC
GTATTGTTCATATGATATAGTTATATGGTCGCAGACGTCATGGCGCTGGT
TGGAAGCAAAGCTAACCGGTTTGTCTATGTTGTTCGCTTCCAATTACAAA
CTGGCTTTCGTGTTGGACAGAAGCTCCATGTTCAGCATCAAGTTTCAGAA
CGAAAATCTCACTCGTCGTCATGAGGTCAAAGCTCTCGAAATCATCTGGC
GCCGTTTCCCGCAATGGAATGCTACCAACACTATTCATATTGATGACCTT
TCCAAGAACTTCGCCCTCAACCCTCAAAGTGGGTTACAAATCCAGCCTTT
CCGAAGGGCAGATGTGGCCCGTTATCACGACAGAGAGCTTTATTTACTTG
AGGTGTACCTCAAGCTTTTAGCGTCTGGGGAGAATGATTTCACAACTTTG
GACCATAGAACATGGAAAAGGTACGCCTGGGACCGCAGGCCCTTGGACTG
CATGGATGCGGAAGTTAATCAAGGCCCGCAAAGGAACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:4030073..4031212+

>Gvermi3695.t1 ID=Gvermi3695.t1|Name=Gvermi3695.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1140bp|location=Sequence derived from alignment at ScGOVlb_41:4030073..4031212+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTACCAATGTGAAACAACCTCGAATGGAGCCTGATTTGCAGACCTG
TCCGCCAGCCACCAGTGCGCGCAGTAGCGCCCACCACTCTTCAGCCTCCC
CACACGACACCCGGCTGGTACAAGACGAAGACGAACTCTTCCTGCACGTC
AAATGGAGCCGTTCCACATACGTCGTCGAGCTCACCCCGCAGCAAACCGT
CACCGACCTCAAGCAAAGTCTTTTTCAGCTCACAGATGTGTTGCCAAAGC
GTCAGAAGATTCTTGGTCTTCCTTCGCCACCCGCGTGCCAGCTACACGAC
GGGGTACCTTTGGGCCAACTGCCCCTCAAGCCCGGCCACAACATCATCAT
GGTCGGTACGCGTGAGGAGGATATTGATGCGCTCAACAAAAATTATCTGT
CTCATCACGCGGAAATGCTCGATGAGGTCGACTGTGACATGCTTGATGAC
CCGGCCAAGTTGCGACACGCGTTTCGGAACAAACTGGAGCGTCGTATCGA
GTCAACAGAGTTTCGCATCATGAACCCCCCGAGGCCGGGCAAGAAATTGC
TAGTTTTGGATTTAGACTACACCCTGTTTGACTGCAAAGGAACAAGCCCG
ATAATTGCCGATTGGGCGCGCCCTGGTTTGCATCGTTTGTTAGCGTCTGC
GTATTGTTCATATGATATAGTTATATGGTCGCAGACGTCATGGCGCTGGT
TGGAAGCAAAGCTAACCGGTTTGTCTATGTTGTTCGCTTCCAATTACAAA
CTGGCTTTCGTGTTGGACAGAAGCTCCATGTTCAGCATCAAGTTTCAGAA
CGAAAATCTCACTCGTCGTCATGAGGTCAAAGCTCTCGAAATCATCTGGC
GCCGTTTCCCGCAATGGAATGCTACCAACACTATTCATATTGATGACCTT
TCCAAGAACTTCGCCCTCAACCCTCAAAGTGGGTTACAAATCCAGCCTTT
CCGAAGGGCAGATGTGGCCCGTTATCACGACAGAGAGCTTTATTTACTTG
AGGTGTACCTCAAGCTTTTAGCGTCTGGGGAGAATGATTTCACAACTTTG
GACCATAGAACATGGAAAAGGTACGCCTGGGACCGCAGGCCCTTGGACTG
CATGGATGCGGAAGTTAATCAAGGCCCGCAAAGGAACTGA
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