Gvermi3682.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3682.t1
Unique NameGvermi3682.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length729
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3997215..3999495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706950.1
PFAMsCN_hydrolase,NAD_synthase
Max annot lvl2759|Eukaryota
KEGG rclassRC00010,RC00100
KEGG koko:K01950
KEGG ReactionR00257
KEGG Pathwayko00760,ko01100,map00760,map01100
KEGG ModuleM00115
GOsGO:0003674,GO:0003824,GO:0003952,GO:0004359,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0016874,GO:0016879,GO:0016884,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.25e-291
EggNOG OGsCOG0171@1|root,KOG2303@2759|Eukaryota
EC6.3.5.1
DescriptionNAD synthase (glutamine-hydrolyzing) activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3682Gvermi3682Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 3997215..3999495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3682.t1Gvermi3682.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 3997215..3999495 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3682.t1.stop1Gvermi3682.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 3997215..3997217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3682.t1.CDS1Gvermi3682.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3997215..3997267 -
Gvermi3682.t1.CDS2Gvermi3682.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3997362..3999495 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3682.t1.exon1Gvermi3682.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3997215..3997267 -
Gvermi3682.t1.exon2Gvermi3682.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3997362..3999495 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3682.t1.intron1Gvermi3682.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 3997268..3997361 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3682.t1.start1Gvermi3682.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 3999493..3999495 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3682.t1 ID=Gvermi3682.t1|Name=Gvermi3682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=729bp
MSSVTVATCSLNQWAMDFDGNLNRTKQSVEQARDHGARYRLGPELEISGY
GCEDHFLELDTFTHTWECIAELLSEGFSDNIVLDVGGPVMHRGVAYNCRI
LLLNREILLVRPKITFADDGNYREPRWFTPWERERPLEELTLPRIVREAT
NSQQPRCPIGQAIIEFCDGVTIGCESCEELWSPMSTHLELYMEGADIVGN
GSGSHHSLRKLNDRLELIKSATRKCGGTYLYSNQIGCDGGRLYYDGSAVI
ATNGSILKQGTQFTLETEVEVLSATIETKDIIAYRRGKACRGVQAADRQK
GSRIRRIYANGPFQLSNNQSAAQAQCATQPLLQVRQFRPEEEIARGPACW
LWDYLRRSGMNGFFLPLSGGADSSSSAVIVGSMCQMLVAATNSDKCEERL
LNDIRRVTQTDSQYVPRNSRELAGRILHTVYLGSKGSSSEETRERAAALS
EEIGAWHTSVDIHAVVDAAINVFVSVFGSSSRPRFTVHGGSNAENLARQN
LQARIRMVLSYLFAQLLLWARVGKGSLLVLGSANVDESLRGYLTKYDCSS
ADVNPIGGISKTDLRRFLRWAATEDGLGYGVLTDVVDAPPTAELEPLTEN
YAQTDEEDMGMTYDELSWFGRLRKLGRCGPYNMYIKLVSVWKDRLDVVDI
ARKVKFFFRMYSINRHKLTTLTPSYHAEDYSPEDNRFDLRQFLYNTKWTW
QFRKIDEAVTHGGTLRRESETVRIDGQK*
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spliced messenger RNA

>Gvermi3682.t1 ID=Gvermi3682.t1|Name=Gvermi3682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2187bp|location=Sequence derived from alignment at ScGOVlb_41:3997215..3999495- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCAGTTACGGTCGCAACATGTAGTCTCAATCAGTGGGCTATGGA
CTTTGATGGAAATTTGAATCGTACCAAGCAGTCTGTTGAGCAGGCAAGGG
ATCATGGTGCCCGATATAGATTGGGACCGGAGCTGGAGATTTCTGGTTAC
GGTTGCGAGGACCACTTTCTTGAGCTTGATACGTTTACTCATACGTGGGA
ATGTATTGCAGAACTACTATCGGAAGGTTTCTCAGATAATATAGTCCTTG
ACGTAGGCGGTCCTGTAATGCATCGTGGCGTTGCCTACAATTGCAGAATC
TTGCTTCTCAACCGAGAAATTCTGTTGGTGAGGCCAAAGATAACTTTTGC
AGACGATGGAAACTATAGAGAACCACGCTGGTTTACTCCATGGGAACGAG
AACGTCCTCTGGAAGAGTTGACTCTTCCAAGAATCGTCCGCGAGGCTACT
AATAGCCAGCAACCTCGCTGTCCCATCGGTCAAGCCATAATCGAGTTTTG
CGACGGTGTAACAATCGGGTGTGAGTCGTGCGAAGAATTGTGGTCCCCGA
TGTCAACACATCTTGAGCTTTACATGGAAGGGGCAGATATAGTTGGCAAT
GGAAGCGGATCTCACCACAGTCTTCGAAAGCTTAATGATCGTTTAGAGCT
TATTAAATCTGCCACCCGTAAATGTGGCGGCACGTACCTGTACTCAAATC
AAATCGGTTGTGATGGAGGTCGACTTTACTATGACGGATCTGCAGTGATA
GCCACAAATGGCTCAATTCTGAAACAAGGCACTCAGTTCACTTTAGAAAC
AGAAGTAGAAGTTCTCTCTGCAACCATTGAAACCAAAGATATCATTGCAT
ACCGACGCGGGAAGGCTTGCAGAGGTGTACAGGCTGCTGATCGGCAAAAA
GGAAGCCGTATTCGGAGAATCTACGCCAATGGACCTTTCCAATTATCGAA
CAATCAATCTGCGGCTCAGGCCCAATGTGCAACACAACCCCTCCTTCAAG
TGAGGCAATTTCGACCTGAAGAGGAGATTGCACGTGGTCCGGCATGTTGG
CTGTGGGACTACTTGCGACGCTCAGGAATGAACGGTTTCTTCCTGCCTTT
GAGTGGTGGCGCCGATTCTTCTTCGTCAGCAGTTATTGTCGGCAGCATGT
GTCAGATGCTTGTAGCTGCTACAAACAGCGATAAATGTGAAGAGAGACTG
CTTAACGATATTCGTCGAGTGACGCAAACCGACAGTCAGTACGTACCGCG
CAACTCAAGAGAGCTTGCAGGTCGCATTCTCCATACGGTATACCTTGGAA
GCAAAGGATCATCATCGGAGGAAACCCGAGAAAGAGCAGCAGCTTTATCT
GAAGAAATCGGAGCATGGCACACCTCAGTGGACATACACGCCGTCGTAGA
CGCCGCTATAAATGTGTTTGTGAGCGTTTTTGGATCATCCTCGAGGCCAC
GCTTCACGGTTCATGGAGGGTCTAATGCAGAGAATTTGGCTCGTCAAAAC
CTACAAGCGCGAATACGAATGGTTCTTTCCTACTTGTTCGCCCAACTACT
GCTCTGGGCAAGGGTGGGAAAAGGATCCCTGCTGGTGCTGGGCTCTGCGA
ATGTTGACGAGAGTCTTCGTGGGTACTTGACAAAGTATGACTGCAGTTCA
GCTGATGTGAATCCTATTGGAGGGATAAGCAAGACAGACTTGCGTCGCTT
TTTGCGCTGGGCTGCAACTGAAGACGGGCTTGGTTACGGAGTCTTGACGG
ATGTGGTAGATGCACCACCGACTGCTGAACTGGAACCTTTGACAGAAAAT
TACGCACAGACTGATGAAGAAGACATGGGCATGACGTATGACGAATTGTC
ATGGTTCGGAAGGCTTCGAAAGCTTGGGCGATGTGGACCGTACAACATGT
ATATCAAACTAGTATCTGTTTGGAAGGATCGCCTTGATGTGGTTGATATT
GCGCGGAAGGTAAAGTTCTTCTTTCGAATGTACTCGATTAATCGACATAA
GCTCACTACACTGACGCCCTCTTATCATGCTGAAGATTATTCTCCGGAAG
ACAATCGCTTTGATCTCCGACAATTCCTGTACAACACGAAATGGACGTGG
CAGTTTCGCAAGATAGACGAAGCTGTTACTCACGGTGGTACGTTACGCCG
TGAGAGTGAGACAGTGAGAATAGATGGCCAGAAGTAA
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protein sequence of Gvermi3682.t1

>Gvermi3682.t1 ID=Gvermi3682.t1|Name=Gvermi3682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=729bp
MSSVTVATCSLNQWAMDFDGNLNRTKQSVEQARDHGARYRLGPELEISGY
GCEDHFLELDTFTHTWECIAELLSEGFSDNIVLDVGGPVMHRGVAYNCRI
LLLNREILLVRPKITFADDGNYREPRWFTPWERERPLEELTLPRIVREAT
NSQQPRCPIGQAIIEFCDGVTIGCESCEELWSPMSTHLELYMEGADIVGN
GSGSHHSLRKLNDRLELIKSATRKCGGTYLYSNQIGCDGGRLYYDGSAVI
ATNGSILKQGTQFTLETEVEVLSATIETKDIIAYRRGKACRGVQAADRQK
GSRIRRIYANGPFQLSNNQSAAQAQCATQPLLQVRQFRPEEEIARGPACW
LWDYLRRSGMNGFFLPLSGGADSSSSAVIVGSMCQMLVAATNSDKCEERL
LNDIRRVTQTDSQYVPRNSRELAGRILHTVYLGSKGSSSEETRERAAALS
EEIGAWHTSVDIHAVVDAAINVFVSVFGSSSRPRFTVHGGSNAENLARQN
LQARIRMVLSYLFAQLLLWARVGKGSLLVLGSANVDESLRGYLTKYDCSS
ADVNPIGGISKTDLRRFLRWAATEDGLGYGVLTDVVDAPPTAELEPLTEN
YAQTDEEDMGMTYDELSWFGRLRKLGRCGPYNMYIKLVSVWKDRLDVVDI
ARKVKFFFRMYSINRHKLTTLTPSYHAEDYSPEDNRFDLRQFLYNTKWTW
QFRKIDEAVTHGGTLRRESETVRIDGQK*
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mRNA from alignment at ScGOVlb_41:3997215..3999495-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3682.t1 ID=Gvermi3682.t1|Name=Gvermi3682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2281bp|location=Sequence derived from alignment at ScGOVlb_41:3997215..3999495- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTTCAGTTACGGTCGCAACATGTAGTCTCAATCAGTGGGCTATGGA
CTTTGATGGAAATTTGAATCGTACCAAGCAGTCTGTTGAGCAGGCAAGGG
ATCATGGTGCCCGATATAGATTGGGACCGGAGCTGGAGATTTCTGGTTAC
GGTTGCGAGGACCACTTTCTTGAGCTTGATACGTTTACTCATACGTGGGA
ATGTATTGCAGAACTACTATCGGAAGGTTTCTCAGATAATATAGTCCTTG
ACGTAGGCGGTCCTGTAATGCATCGTGGCGTTGCCTACAATTGCAGAATC
TTGCTTCTCAACCGAGAAATTCTGTTGGTGAGGCCAAAGATAACTTTTGC
AGACGATGGAAACTATAGAGAACCACGCTGGTTTACTCCATGGGAACGAG
AACGTCCTCTGGAAGAGTTGACTCTTCCAAGAATCGTCCGCGAGGCTACT
AATAGCCAGCAACCTCGCTGTCCCATCGGTCAAGCCATAATCGAGTTTTG
CGACGGTGTAACAATCGGGTGTGAGTCGTGCGAAGAATTGTGGTCCCCGA
TGTCAACACATCTTGAGCTTTACATGGAAGGGGCAGATATAGTTGGCAAT
GGAAGCGGATCTCACCACAGTCTTCGAAAGCTTAATGATCGTTTAGAGCT
TATTAAATCTGCCACCCGTAAATGTGGCGGCACGTACCTGTACTCAAATC
AAATCGGTTGTGATGGAGGTCGACTTTACTATGACGGATCTGCAGTGATA
GCCACAAATGGCTCAATTCTGAAACAAGGCACTCAGTTCACTTTAGAAAC
AGAAGTAGAAGTTCTCTCTGCAACCATTGAAACCAAAGATATCATTGCAT
ACCGACGCGGGAAGGCTTGCAGAGGTGTACAGGCTGCTGATCGGCAAAAA
GGAAGCCGTATTCGGAGAATCTACGCCAATGGACCTTTCCAATTATCGAA
CAATCAATCTGCGGCTCAGGCCCAATGTGCAACACAACCCCTCCTTCAAG
TGAGGCAATTTCGACCTGAAGAGGAGATTGCACGTGGTCCGGCATGTTGG
CTGTGGGACTACTTGCGACGCTCAGGAATGAACGGTTTCTTCCTGCCTTT
GAGTGGTGGCGCCGATTCTTCTTCGTCAGCAGTTATTGTCGGCAGCATGT
GTCAGATGCTTGTAGCTGCTACAAACAGCGATAAATGTGAAGAGAGACTG
CTTAACGATATTCGTCGAGTGACGCAAACCGACAGTCAGTACGTACCGCG
CAACTCAAGAGAGCTTGCAGGTCGCATTCTCCATACGGTATACCTTGGAA
GCAAAGGATCATCATCGGAGGAAACCCGAGAAAGAGCAGCAGCTTTATCT
GAAGAAATCGGAGCATGGCACACCTCAGTGGACATACACGCCGTCGTAGA
CGCCGCTATAAATGTGTTTGTGAGCGTTTTTGGATCATCCTCGAGGCCAC
GCTTCACGGTTCATGGAGGGTCTAATGCAGAGAATTTGGCTCGTCAAAAC
CTACAAGCGCGAATACGAATGGTTCTTTCCTACTTGTTCGCCCAACTACT
GCTCTGGGCAAGGGTGGGAAAAGGATCCCTGCTGGTGCTGGGCTCTGCGA
ATGTTGACGAGAGTCTTCGTGGGTACTTGACAAAGTATGACTGCAGTTCA
GCTGATGTGAATCCTATTGGAGGGATAAGCAAGACAGACTTGCGTCGCTT
TTTGCGCTGGGCTGCAACTGAAGACGGGCTTGGTTACGGAGTCTTGACGG
ATGTGGTAGATGCACCACCGACTGCTGAACTGGAACCTTTGACAGAAAAT
TACGCACAGACTGATGAAGAAGACATGGGCATGACGTATGACGAATTGTC
ATGGTTCGGAAGGCTTCGAAAGCTTGGGCGATGTGGACCGTACAACATGT
ATATCAAACTAGTATCTGTTTGGAAGGATCGCCTTGATGTGGTTGATATT
GCGCGGAAGGTAAAGTTCTTCTTTCGAATGTACTCGATTAATCGACATAA
GCTCACTACACTGACGCCCTCTTATCATGCTGAAGATTATTCTCCGGAAG
ACAATCGCTTTGATCTCCGACAATTCCTGTACAACACGAAATGGACGTGG
CAGTTTCGCAAGATAGACGAAGCTGTTACTCACGGTGAGATGCAACCATG
AACAATGACAAGACACACGTGTCTGCCAAACCGCGGGTGTACACTTCGTG
ACGGTGGCAAAAAACTTTTCTAAGACAGGTGGTACGTTACGCCGTGAGAG
TGAGACAGTGAGAATAGATGGCCAGAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:3997215..3999495-

>Gvermi3682.t1 ID=Gvermi3682.t1|Name=Gvermi3682.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2187bp|location=Sequence derived from alignment at ScGOVlb_41:3997215..3999495- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTTCAGTTACGGTCGCAACATGTAGTCTCAATCAGTGGGCTATGGA
CTTTGATGGAAATTTGAATCGTACCAAGCAGTCTGTTGAGCAGGCAAGGG
ATCATGGTGCCCGATATAGATTGGGACCGGAGCTGGAGATTTCTGGTTAC
GGTTGCGAGGACCACTTTCTTGAGCTTGATACGTTTACTCATACGTGGGA
ATGTATTGCAGAACTACTATCGGAAGGTTTCTCAGATAATATAGTCCTTG
ACGTAGGCGGTCCTGTAATGCATCGTGGCGTTGCCTACAATTGCAGAATC
TTGCTTCTCAACCGAGAAATTCTGTTGGTGAGGCCAAAGATAACTTTTGC
AGACGATGGAAACTATAGAGAACCACGCTGGTTTACTCCATGGGAACGAG
AACGTCCTCTGGAAGAGTTGACTCTTCCAAGAATCGTCCGCGAGGCTACT
AATAGCCAGCAACCTCGCTGTCCCATCGGTCAAGCCATAATCGAGTTTTG
CGACGGTGTAACAATCGGGTGTGAGTCGTGCGAAGAATTGTGGTCCCCGA
TGTCAACACATCTTGAGCTTTACATGGAAGGGGCAGATATAGTTGGCAAT
GGAAGCGGATCTCACCACAGTCTTCGAAAGCTTAATGATCGTTTAGAGCT
TATTAAATCTGCCACCCGTAAATGTGGCGGCACGTACCTGTACTCAAATC
AAATCGGTTGTGATGGAGGTCGACTTTACTATGACGGATCTGCAGTGATA
GCCACAAATGGCTCAATTCTGAAACAAGGCACTCAGTTCACTTTAGAAAC
AGAAGTAGAAGTTCTCTCTGCAACCATTGAAACCAAAGATATCATTGCAT
ACCGACGCGGGAAGGCTTGCAGAGGTGTACAGGCTGCTGATCGGCAAAAA
GGAAGCCGTATTCGGAGAATCTACGCCAATGGACCTTTCCAATTATCGAA
CAATCAATCTGCGGCTCAGGCCCAATGTGCAACACAACCCCTCCTTCAAG
TGAGGCAATTTCGACCTGAAGAGGAGATTGCACGTGGTCCGGCATGTTGG
CTGTGGGACTACTTGCGACGCTCAGGAATGAACGGTTTCTTCCTGCCTTT
GAGTGGTGGCGCCGATTCTTCTTCGTCAGCAGTTATTGTCGGCAGCATGT
GTCAGATGCTTGTAGCTGCTACAAACAGCGATAAATGTGAAGAGAGACTG
CTTAACGATATTCGTCGAGTGACGCAAACCGACAGTCAGTACGTACCGCG
CAACTCAAGAGAGCTTGCAGGTCGCATTCTCCATACGGTATACCTTGGAA
GCAAAGGATCATCATCGGAGGAAACCCGAGAAAGAGCAGCAGCTTTATCT
GAAGAAATCGGAGCATGGCACACCTCAGTGGACATACACGCCGTCGTAGA
CGCCGCTATAAATGTGTTTGTGAGCGTTTTTGGATCATCCTCGAGGCCAC
GCTTCACGGTTCATGGAGGGTCTAATGCAGAGAATTTGGCTCGTCAAAAC
CTACAAGCGCGAATACGAATGGTTCTTTCCTACTTGTTCGCCCAACTACT
GCTCTGGGCAAGGGTGGGAAAAGGATCCCTGCTGGTGCTGGGCTCTGCGA
ATGTTGACGAGAGTCTTCGTGGGTACTTGACAAAGTATGACTGCAGTTCA
GCTGATGTGAATCCTATTGGAGGGATAAGCAAGACAGACTTGCGTCGCTT
TTTGCGCTGGGCTGCAACTGAAGACGGGCTTGGTTACGGAGTCTTGACGG
ATGTGGTAGATGCACCACCGACTGCTGAACTGGAACCTTTGACAGAAAAT
TACGCACAGACTGATGAAGAAGACATGGGCATGACGTATGACGAATTGTC
ATGGTTCGGAAGGCTTCGAAAGCTTGGGCGATGTGGACCGTACAACATGT
ATATCAAACTAGTATCTGTTTGGAAGGATCGCCTTGATGTGGTTGATATT
GCGCGGAAGGTAAAGTTCTTCTTTCGAATGTACTCGATTAATCGACATAA
GCTCACTACACTGACGCCCTCTTATCATGCTGAAGATTATTCTCCGGAAG
ACAATCGCTTTGATCTCCGACAATTCCTGTACAACACGAAATGGACGTGG
CAGTTTCGCAAGATAGACGAAGCTGTTACTCACGGTGGTACGTTACGCCG
TGAGAGTGAGACAGTGAGAATAGATGGCCAGAAGTAA
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