Gvermi3647.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3647.t1
Unique Name	Gvermi3647.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	362

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:3779055..3780140 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	402777.KB235904_gene4565
Preferred name	speE
PFAMs	AdoMet_dc,Spermine_synt_N,Spermine_synth
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00021,RC00053
KEGG ko	ko:K00797
KEGG Reaction	R01920,R02869,R08359
KEGG Pathway	ko00270,ko00330,ko00410,ko00480,ko01100,map00270,map00330,map00410,map00480,map01100
KEGG Module	M00034,M00133
Evalue	2.28e-89
EggNOG OGs	COG0421@1\|root,COG0421@2\|Bacteria,1G36Y@1117\|Cyanobacteria,1H85B@1150\|Oscillatoriales
EC	2.5.1.16
Description	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3647	Gvermi3647	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 3779055..3780140 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3647.t1.start1	Gvermi3647.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 3779055..3779057 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3647.t1.CDS1	Gvermi3647.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 3779055..3780140 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3647.t1.exon1	Gvermi3647.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 3779055..3780140 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3647.t1.stop1	Gvermi3647.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 3780138..3780140 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3647.t1	Gvermi3647.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 3779055..3780140 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:3779055..3780140+
coding sequence from alignment at ScGOVlb_41:3779055..3780140+

mRNA sequence

>Gvermi3647.t1 ID=Gvermi3647.t1|Name=Gvermi3647.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=362bp
MLLPGFTIPFVRSLSVLHLHPKQHPKRLKALFQMGHQKAVPPEPNYATET
TVPSMWLVEHITPYDAYHHGIKQVLFSKNTKFQAMTIADTGTYGRALFLD
EKIQTSEGDEPFYHEPLVHLPCLVHSNPEKVLILGGADGGAAREALRWFS
VRSVVVVDIDGEAVDACRKYLPNIARGSLDDPKCTLIIGDAVDYIDNNSI
LYDVIICDLTDPVEDGPSLHLFTREFFLNLKRSLKPTGVISIMGGPTSLR
ENNIIFPRTCATLASVFESVRPAQVFVPTYGSPLGIIIASDEKRALPEPC
DLDLKIAESISGEMHVLDGSSVHGHFAIPRCLRKSIMDETQIFTGSSQVA
AFGKGILSKKD*

spliced messenger RNA

>Gvermi3647.t1 ID=Gvermi3647.t1|Name=Gvermi3647.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at ScGOVlb_41:3779055..3780140+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCTGCCGGGTTTCACGATCCCCTTCGTCCGCAGTCTCTCCGTTCT
CCATCTCCATCCCAAGCAACATCCGAAGCGACTCAAGGCCTTATTCCAAA
TGGGGCATCAGAAAGCCGTGCCGCCCGAACCGAATTATGCCACTGAAACA
ACAGTCCCGTCAATGTGGCTCGTCGAACATATAACACCGTACGATGCCTA
TCATCACGGTATAAAACAAGTACTGTTTTCAAAGAACACCAAATTTCAAG
CCATGACCATAGCTGATACTGGAACTTATGGCCGAGCGCTCTTCCTTGAC
GAAAAAATCCAAACATCAGAGGGTGATGAGCCATTTTATCACGAACCCTT
GGTTCATTTGCCATGTCTTGTACATTCAAATCCTGAGAAAGTTCTCATCT
TGGGCGGCGCTGATGGCGGTGCAGCCAGAGAGGCCCTTCGGTGGTTTTCT
GTCAGGTCTGTGGTTGTGGTCGACATTGATGGAGAAGCAGTTGATGCATG
CCGAAAATACCTTCCGAACATCGCTCGAGGCTCTTTGGATGACCCGAAAT
GCACGCTTATTATCGGGGATGCTGTCGACTACATCGACAACAATAGCATC
TTATATGACGTCATCATATGCGATTTGACAGATCCGGTGGAAGACGGTCC
AAGCTTGCACCTCTTCACCAGGGAATTTTTTTTAAATCTTAAACGGAGTC
TGAAACCAACGGGAGTCATCTCCATCATGGGCGGTCCCACATCATTGAGA
GAAAACAATATCATTTTCCCTCGAACTTGTGCCACTCTAGCCTCCGTGTT
TGAATCTGTGCGCCCTGCCCAAGTATTTGTTCCAACCTACGGCTCCCCTC
TTGGAATCATCATTGCCTCGGACGAAAAACGAGCTCTACCGGAACCCTGT
GATCTCGATTTGAAGATTGCCGAGTCCATCTCAGGAGAAATGCATGTTCT
GGATGGCAGTTCCGTTCATGGTCACTTCGCCATACCCCGCTGTTTACGGA
AATCAATAATGGATGAAACACAAATTTTTACAGGCAGTAGCCAAGTTGCT
GCGTTTGGGAAAGGTATTCTGAGCAAAAAAGATTGA

protein sequence of Gvermi3647.t1

>Gvermi3647.t1 ID=Gvermi3647.t1|Name=Gvermi3647.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=362bp
MLLPGFTIPFVRSLSVLHLHPKQHPKRLKALFQMGHQKAVPPEPNYATET
TVPSMWLVEHITPYDAYHHGIKQVLFSKNTKFQAMTIADTGTYGRALFLD
EKIQTSEGDEPFYHEPLVHLPCLVHSNPEKVLILGGADGGAAREALRWFS
VRSVVVVDIDGEAVDACRKYLPNIARGSLDDPKCTLIIGDAVDYIDNNSI
LYDVIICDLTDPVEDGPSLHLFTREFFLNLKRSLKPTGVISIMGGPTSLR
ENNIIFPRTCATLASVFESVRPAQVFVPTYGSPLGIIIASDEKRALPEPC
DLDLKIAESISGEMHVLDGSSVHGHFAIPRCLRKSIMDETQIFTGSSQVA
AFGKGILSKKD*

mRNA from alignment at ScGOVlb_41:3779055..3780140+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3647.t1 ID=Gvermi3647.t1|Name=Gvermi3647.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at ScGOVlb_41:3779055..3780140+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTCTGCCGGGTTTCACGATCCCCTTCGTCCGCAGTCTCTCCGTTCT
CCATCTCCATCCCAAGCAACATCCGAAGCGACTCAAGGCCTTATTCCAAA
TGGGGCATCAGAAAGCCGTGCCGCCCGAACCGAATTATGCCACTGAAACA
ACAGTCCCGTCAATGTGGCTCGTCGAACATATAACACCGTACGATGCCTA
TCATCACGGTATAAAACAAGTACTGTTTTCAAAGAACACCAAATTTCAAG
CCATGACCATAGCTGATACTGGAACTTATGGCCGAGCGCTCTTCCTTGAC
GAAAAAATCCAAACATCAGAGGGTGATGAGCCATTTTATCACGAACCCTT
GGTTCATTTGCCATGTCTTGTACATTCAAATCCTGAGAAAGTTCTCATCT
TGGGCGGCGCTGATGGCGGTGCAGCCAGAGAGGCCCTTCGGTGGTTTTCT
GTCAGGTCTGTGGTTGTGGTCGACATTGATGGAGAAGCAGTTGATGCATG
CCGAAAATACCTTCCGAACATCGCTCGAGGCTCTTTGGATGACCCGAAAT
GCACGCTTATTATCGGGGATGCTGTCGACTACATCGACAACAATAGCATC
TTATATGACGTCATCATATGCGATTTGACAGATCCGGTGGAAGACGGTCC
AAGCTTGCACCTCTTCACCAGGGAATTTTTTTTAAATCTTAAACGGAGTC
TGAAACCAACGGGAGTCATCTCCATCATGGGCGGTCCCACATCATTGAGA
GAAAACAATATCATTTTCCCTCGAACTTGTGCCACTCTAGCCTCCGTGTT
TGAATCTGTGCGCCCTGCCCAAGTATTTGTTCCAACCTACGGCTCCCCTC
TTGGAATCATCATTGCCTCGGACGAAAAACGAGCTCTACCGGAACCCTGT
GATCTCGATTTGAAGATTGCCGAGTCCATCTCAGGAGAAATGCATGTTCT
GGATGGCAGTTCCGTTCATGGTCACTTCGCCATACCCCGCTGTTTACGGA
AATCAATAATGGATGAAACACAAATTTTTACAGGCAGTAGCCAAGTTGCT
GCGTTTGGGAAAGGTATTCTGAGCAAAAAAGATTGA

Coding sequence (CDS) from alignment at ScGOVlb_41:3779055..3780140+

>Gvermi3647.t1 ID=Gvermi3647.t1|Name=Gvermi3647.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1086bp|location=Sequence derived from alignment at ScGOVlb_41:3779055..3780140+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTCTGCCGGGTTTCACGATCCCCTTCGTCCGCAGTCTCTCCGTTCT
CCATCTCCATCCCAAGCAACATCCGAAGCGACTCAAGGCCTTATTCCAAA
TGGGGCATCAGAAAGCCGTGCCGCCCGAACCGAATTATGCCACTGAAACA
ACAGTCCCGTCAATGTGGCTCGTCGAACATATAACACCGTACGATGCCTA
TCATCACGGTATAAAACAAGTACTGTTTTCAAAGAACACCAAATTTCAAG
CCATGACCATAGCTGATACTGGAACTTATGGCCGAGCGCTCTTCCTTGAC
GAAAAAATCCAAACATCAGAGGGTGATGAGCCATTTTATCACGAACCCTT
GGTTCATTTGCCATGTCTTGTACATTCAAATCCTGAGAAAGTTCTCATCT
TGGGCGGCGCTGATGGCGGTGCAGCCAGAGAGGCCCTTCGGTGGTTTTCT
GTCAGGTCTGTGGTTGTGGTCGACATTGATGGAGAAGCAGTTGATGCATG
CCGAAAATACCTTCCGAACATCGCTCGAGGCTCTTTGGATGACCCGAAAT
GCACGCTTATTATCGGGGATGCTGTCGACTACATCGACAACAATAGCATC
TTATATGACGTCATCATATGCGATTTGACAGATCCGGTGGAAGACGGTCC
AAGCTTGCACCTCTTCACCAGGGAATTTTTTTTAAATCTTAAACGGAGTC
TGAAACCAACGGGAGTCATCTCCATCATGGGCGGTCCCACATCATTGAGA
GAAAACAATATCATTTTCCCTCGAACTTGTGCCACTCTAGCCTCCGTGTT
TGAATCTGTGCGCCCTGCCCAAGTATTTGTTCCAACCTACGGCTCCCCTC
TTGGAATCATCATTGCCTCGGACGAAAAACGAGCTCTACCGGAACCCTGT
GATCTCGATTTGAAGATTGCCGAGTCCATCTCAGGAGAAATGCATGTTCT
GGATGGCAGTTCCGTTCATGGTCACTTCGCCATACCCCGCTGTTTACGGA
AATCAATAATGGATGAAACACAAATTTTTACAGGCAGTAGCCAAGTTGCT
GCGTTTGGGAAAGGTATTCTGAGCAAAAAAGATTGA