Gvermi3644.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3644.t1
Unique NameGvermi3644.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length717
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3773989..3776238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703483.1
PFAMsXPG_I,XPG_N
Max annot lvl2759|Eukaryota
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Evalue9.19e-83
EggNOG OGsCOG0258@1|root,KOG2518@2759|Eukaryota
Description5'-3' exodeoxyribonuclease activity
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3644Gvermi3644Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 3773989..3776238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3644.t1Gvermi3644.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 3773989..3776238 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3644.t1.stop1Gvermi3644.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 3773989..3773991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3644.t1.CDS1Gvermi3644.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3773989..3776098 -
Gvermi3644.t1.CDS2Gvermi3644.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3776198..3776238 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3644.t1.exon1Gvermi3644.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3773989..3776098 -
Gvermi3644.t1.exon2Gvermi3644.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3776198..3776238 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3644.t1.intron1Gvermi3644.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 3776099..3776197 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3644.t1.start1Gvermi3644.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 3776236..3776238 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3644.t1 ID=Gvermi3644.t1|Name=Gvermi3644.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=717bp
MGINGLLPVIKPICKQQHVQEFANSRVGIDAYAWLHKGAFSCASKICTGV
ETRAYVEYCMHRVRMLMHFQAQPVVVFDGAELPMKAGTHAERRERRKEAL
RRAEQAAAAGDSRKAEEWYQRACFVTSDMARNVIRECRKLNVEYVVAPYE
ADAQLAWMMQTGYIASVITEDSDLLVYGASKVFYKMSKDGMGDMYESKHL
PSLETISMANFTEDMFMYMCVCSGCDFFKGVQGLGIKKAHALTKRYKTLP
RVLQAIRREPRYRVSPTFTIDFTRACMVFRHQTVYDMNKKIHIHLRDVNA
LTISKLPHGVLQKMEGGAFDLSFLGEHRDPDIARKVAEGFVHPRTLKEYE
EPLDIIDRPVMTKRRPRHFPNPPSKQRRLTPEPPRKVRGFQVQPSSSRLQ
TPLVGARRLVDRSLARPISFNPKLIGVSLKAQTKAGHSTCGVWSSFRPSS
RLENKTPRPRREHDGVQNKEAENKAAVGDSASILKEEDFVKVHEDRNETH
LSPSMSLTLEIESQPETTEMPVGFSDVDLSERPRSSSRRVEAVHRALGKF
ARTKERDVREKFKPEKKRSLPPSCPSTPPKQSSSILSPSTDLPSPDIDTT
RQHALVKTSAGPGQGQKIVASDDRNVTPKSSLQRRKSNQTPLKPLKSSKS
STGRQLRLSRFFKPVSLSKEAKDIAPINTIEKMLKSADAVPRKKSSPCSK
ININEMDNFMRRSNRD*
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spliced messenger RNA

>Gvermi3644.t1 ID=Gvermi3644.t1|Name=Gvermi3644.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2151bp|location=Sequence derived from alignment at ScGOVlb_41:3773989..3776238- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCATAAATGGGCTTCTTCCCGTCATCAAGCCCATATGTAAGCAGCA
GCATGTTCAAGAATTCGCAAATTCCCGAGTGGGTATCGACGCCTACGCAT
GGTTACACAAGGGAGCTTTCTCTTGCGCCTCAAAAATATGCACTGGAGTC
GAAACACGCGCATACGTTGAATACTGCATGCATCGAGTGAGAATGCTGAT
GCATTTCCAAGCTCAGCCGGTAGTTGTATTCGATGGAGCTGAGCTGCCTA
TGAAAGCCGGTACACACGCTGAGAGGCGAGAGCGGCGCAAGGAAGCCTTA
AGAAGAGCAGAACAAGCTGCAGCGGCCGGGGACTCTCGCAAAGCAGAAGA
GTGGTATCAGCGAGCCTGTTTTGTCACTTCAGATATGGCTCGAAATGTAA
TACGAGAATGTCGGAAGCTTAACGTCGAATACGTTGTCGCTCCGTACGAA
GCCGATGCTCAACTGGCGTGGATGATGCAAACCGGATACATTGCGAGTGT
TATCACAGAGGATTCAGATTTGCTCGTGTACGGAGCGTCTAAGGTATTCT
ACAAGATGAGCAAAGACGGTATGGGAGACATGTATGAAAGCAAACACCTT
CCTTCATTAGAGACAATATCGATGGCAAACTTCACTGAGGACATGTTCAT
GTACATGTGCGTGTGCTCTGGTTGTGACTTCTTCAAAGGCGTGCAAGGCT
TGGGTATAAAGAAAGCTCATGCTCTCACCAAGCGCTACAAGACTCTTCCC
CGTGTTTTGCAAGCTATTCGGCGTGAACCTCGGTATCGCGTTTCACCAAC
CTTCACCATTGACTTCACTCGAGCATGTATGGTCTTTCGCCATCAAACGG
TGTATGACATGAACAAAAAAATTCACATCCATCTTCGAGACGTCAATGCG
TTGACTATATCCAAGTTACCACATGGGGTCCTCCAGAAAATGGAAGGCGG
CGCTTTTGATCTTTCCTTCCTTGGAGAGCATAGAGACCCCGACATCGCAA
GAAAAGTTGCTGAAGGTTTTGTTCATCCTCGCACGTTGAAGGAATACGAG
GAGCCTCTTGACATTATTGATCGCCCTGTCATGACAAAGAGACGCCCAAG
GCATTTTCCAAACCCGCCCTCGAAGCAAAGGCGATTAACGCCTGAACCTC
CACGAAAGGTACGTGGGTTTCAAGTTCAACCATCTTCTAGCAGACTACAG
ACTCCTTTAGTCGGTGCTCGAAGGCTAGTTGATCGGTCACTGGCCCGCCC
CATTTCCTTCAATCCCAAACTCATCGGCGTTTCACTTAAGGCTCAAACAA
AAGCAGGACATTCCACATGCGGAGTTTGGTCCAGTTTTCGTCCGAGTTCC
CGATTAGAAAACAAAACCCCACGCCCTCGGCGTGAACATGATGGCGTGCA
GAATAAAGAAGCAGAAAACAAAGCGGCTGTTGGAGATTCAGCTTCCATAT
TGAAGGAGGAAGATTTCGTAAAAGTCCATGAGGACAGAAACGAAACGCAC
TTGAGCCCATCTATGAGTCTTACATTGGAAATTGAAAGCCAACCAGAAAC
GACAGAAATGCCCGTTGGGTTTAGCGACGTAGATCTTTCAGAAAGACCGA
GGTCATCTTCCCGCCGAGTTGAAGCTGTGCACCGGGCTCTTGGGAAGTTT
GCTCGTACAAAAGAGCGGGATGTGAGAGAGAAGTTCAAACCAGAAAAGAA
AAGGAGTCTGCCGCCATCATGCCCATCTACCCCTCCGAAACAATCTTCTA
GCATTTTGTCGCCTTCTACAGATTTGCCAAGCCCAGACATTGACACGACT
AGACAGCATGCTCTGGTCAAAACGAGCGCAGGTCCAGGACAAGGTCAGAA
AATTGTTGCTTCAGATGATCGTAATGTAACACCAAAAAGTTCCCTCCAAA
GAAGAAAGTCTAATCAAACTCCTTTGAAGCCTTTGAAATCTTCTAAATCA
TCCACAGGAAGGCAGTTGAGACTCAGTCGGTTCTTCAAACCAGTCAGTCT
ATCAAAAGAAGCGAAGGACATTGCACCTATCAATACTATCGAAAAGATGC
TGAAGTCAGCAGATGCTGTCCCCAGAAAGAAATCGTCTCCGTGCTCGAAA
ATTAACATCAATGAAATGGACAATTTCATGAGACGGTCAAACAGAGATTA
G
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protein sequence of Gvermi3644.t1

>Gvermi3644.t1 ID=Gvermi3644.t1|Name=Gvermi3644.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=717bp
MGINGLLPVIKPICKQQHVQEFANSRVGIDAYAWLHKGAFSCASKICTGV
ETRAYVEYCMHRVRMLMHFQAQPVVVFDGAELPMKAGTHAERRERRKEAL
RRAEQAAAAGDSRKAEEWYQRACFVTSDMARNVIRECRKLNVEYVVAPYE
ADAQLAWMMQTGYIASVITEDSDLLVYGASKVFYKMSKDGMGDMYESKHL
PSLETISMANFTEDMFMYMCVCSGCDFFKGVQGLGIKKAHALTKRYKTLP
RVLQAIRREPRYRVSPTFTIDFTRACMVFRHQTVYDMNKKIHIHLRDVNA
LTISKLPHGVLQKMEGGAFDLSFLGEHRDPDIARKVAEGFVHPRTLKEYE
EPLDIIDRPVMTKRRPRHFPNPPSKQRRLTPEPPRKVRGFQVQPSSSRLQ
TPLVGARRLVDRSLARPISFNPKLIGVSLKAQTKAGHSTCGVWSSFRPSS
RLENKTPRPRREHDGVQNKEAENKAAVGDSASILKEEDFVKVHEDRNETH
LSPSMSLTLEIESQPETTEMPVGFSDVDLSERPRSSSRRVEAVHRALGKF
ARTKERDVREKFKPEKKRSLPPSCPSTPPKQSSSILSPSTDLPSPDIDTT
RQHALVKTSAGPGQGQKIVASDDRNVTPKSSLQRRKSNQTPLKPLKSSKS
STGRQLRLSRFFKPVSLSKEAKDIAPINTIEKMLKSADAVPRKKSSPCSK
ININEMDNFMRRSNRD*
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mRNA from alignment at ScGOVlb_41:3773989..3776238-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3644.t1 ID=Gvermi3644.t1|Name=Gvermi3644.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2250bp|location=Sequence derived from alignment at ScGOVlb_41:3773989..3776238- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCATAAATGGGCTTCTTCCCGTCATCAAGCCCATATGGTAAGTAGT
TTTTGTCTTGCCTCGACAATTCTCCGAAATGCAATCACATACTCTCCGTA
ATACTAACAAAGCATTTCAATCGGTTCACACCCGTCGCAGTAAGCAGCAG
CATGTTCAAGAATTCGCAAATTCCCGAGTGGGTATCGACGCCTACGCATG
GTTACACAAGGGAGCTTTCTCTTGCGCCTCAAAAATATGCACTGGAGTCG
AAACACGCGCATACGTTGAATACTGCATGCATCGAGTGAGAATGCTGATG
CATTTCCAAGCTCAGCCGGTAGTTGTATTCGATGGAGCTGAGCTGCCTAT
GAAAGCCGGTACACACGCTGAGAGGCGAGAGCGGCGCAAGGAAGCCTTAA
GAAGAGCAGAACAAGCTGCAGCGGCCGGGGACTCTCGCAAAGCAGAAGAG
TGGTATCAGCGAGCCTGTTTTGTCACTTCAGATATGGCTCGAAATGTAAT
ACGAGAATGTCGGAAGCTTAACGTCGAATACGTTGTCGCTCCGTACGAAG
CCGATGCTCAACTGGCGTGGATGATGCAAACCGGATACATTGCGAGTGTT
ATCACAGAGGATTCAGATTTGCTCGTGTACGGAGCGTCTAAGGTATTCTA
CAAGATGAGCAAAGACGGTATGGGAGACATGTATGAAAGCAAACACCTTC
CTTCATTAGAGACAATATCGATGGCAAACTTCACTGAGGACATGTTCATG
TACATGTGCGTGTGCTCTGGTTGTGACTTCTTCAAAGGCGTGCAAGGCTT
GGGTATAAAGAAAGCTCATGCTCTCACCAAGCGCTACAAGACTCTTCCCC
GTGTTTTGCAAGCTATTCGGCGTGAACCTCGGTATCGCGTTTCACCAACC
TTCACCATTGACTTCACTCGAGCATGTATGGTCTTTCGCCATCAAACGGT
GTATGACATGAACAAAAAAATTCACATCCATCTTCGAGACGTCAATGCGT
TGACTATATCCAAGTTACCACATGGGGTCCTCCAGAAAATGGAAGGCGGC
GCTTTTGATCTTTCCTTCCTTGGAGAGCATAGAGACCCCGACATCGCAAG
AAAAGTTGCTGAAGGTTTTGTTCATCCTCGCACGTTGAAGGAATACGAGG
AGCCTCTTGACATTATTGATCGCCCTGTCATGACAAAGAGACGCCCAAGG
CATTTTCCAAACCCGCCCTCGAAGCAAAGGCGATTAACGCCTGAACCTCC
ACGAAAGGTACGTGGGTTTCAAGTTCAACCATCTTCTAGCAGACTACAGA
CTCCTTTAGTCGGTGCTCGAAGGCTAGTTGATCGGTCACTGGCCCGCCCC
ATTTCCTTCAATCCCAAACTCATCGGCGTTTCACTTAAGGCTCAAACAAA
AGCAGGACATTCCACATGCGGAGTTTGGTCCAGTTTTCGTCCGAGTTCCC
GATTAGAAAACAAAACCCCACGCCCTCGGCGTGAACATGATGGCGTGCAG
AATAAAGAAGCAGAAAACAAAGCGGCTGTTGGAGATTCAGCTTCCATATT
GAAGGAGGAAGATTTCGTAAAAGTCCATGAGGACAGAAACGAAACGCACT
TGAGCCCATCTATGAGTCTTACATTGGAAATTGAAAGCCAACCAGAAACG
ACAGAAATGCCCGTTGGGTTTAGCGACGTAGATCTTTCAGAAAGACCGAG
GTCATCTTCCCGCCGAGTTGAAGCTGTGCACCGGGCTCTTGGGAAGTTTG
CTCGTACAAAAGAGCGGGATGTGAGAGAGAAGTTCAAACCAGAAAAGAAA
AGGAGTCTGCCGCCATCATGCCCATCTACCCCTCCGAAACAATCTTCTAG
CATTTTGTCGCCTTCTACAGATTTGCCAAGCCCAGACATTGACACGACTA
GACAGCATGCTCTGGTCAAAACGAGCGCAGGTCCAGGACAAGGTCAGAAA
ATTGTTGCTTCAGATGATCGTAATGTAACACCAAAAAGTTCCCTCCAAAG
AAGAAAGTCTAATCAAACTCCTTTGAAGCCTTTGAAATCTTCTAAATCAT
CCACAGGAAGGCAGTTGAGACTCAGTCGGTTCTTCAAACCAGTCAGTCTA
TCAAAAGAAGCGAAGGACATTGCACCTATCAATACTATCGAAAAGATGCT
GAAGTCAGCAGATGCTGTCCCCAGAAAGAAATCGTCTCCGTGCTCGAAAA
TTAACATCAATGAAATGGACAATTTCATGAGACGGTCAAACAGAGATTAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:3773989..3776238-

>Gvermi3644.t1 ID=Gvermi3644.t1|Name=Gvermi3644.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2151bp|location=Sequence derived from alignment at ScGOVlb_41:3773989..3776238- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCATAAATGGGCTTCTTCCCGTCATCAAGCCCATATGTAAGCAGCA
GCATGTTCAAGAATTCGCAAATTCCCGAGTGGGTATCGACGCCTACGCAT
GGTTACACAAGGGAGCTTTCTCTTGCGCCTCAAAAATATGCACTGGAGTC
GAAACACGCGCATACGTTGAATACTGCATGCATCGAGTGAGAATGCTGAT
GCATTTCCAAGCTCAGCCGGTAGTTGTATTCGATGGAGCTGAGCTGCCTA
TGAAAGCCGGTACACACGCTGAGAGGCGAGAGCGGCGCAAGGAAGCCTTA
AGAAGAGCAGAACAAGCTGCAGCGGCCGGGGACTCTCGCAAAGCAGAAGA
GTGGTATCAGCGAGCCTGTTTTGTCACTTCAGATATGGCTCGAAATGTAA
TACGAGAATGTCGGAAGCTTAACGTCGAATACGTTGTCGCTCCGTACGAA
GCCGATGCTCAACTGGCGTGGATGATGCAAACCGGATACATTGCGAGTGT
TATCACAGAGGATTCAGATTTGCTCGTGTACGGAGCGTCTAAGGTATTCT
ACAAGATGAGCAAAGACGGTATGGGAGACATGTATGAAAGCAAACACCTT
CCTTCATTAGAGACAATATCGATGGCAAACTTCACTGAGGACATGTTCAT
GTACATGTGCGTGTGCTCTGGTTGTGACTTCTTCAAAGGCGTGCAAGGCT
TGGGTATAAAGAAAGCTCATGCTCTCACCAAGCGCTACAAGACTCTTCCC
CGTGTTTTGCAAGCTATTCGGCGTGAACCTCGGTATCGCGTTTCACCAAC
CTTCACCATTGACTTCACTCGAGCATGTATGGTCTTTCGCCATCAAACGG
TGTATGACATGAACAAAAAAATTCACATCCATCTTCGAGACGTCAATGCG
TTGACTATATCCAAGTTACCACATGGGGTCCTCCAGAAAATGGAAGGCGG
CGCTTTTGATCTTTCCTTCCTTGGAGAGCATAGAGACCCCGACATCGCAA
GAAAAGTTGCTGAAGGTTTTGTTCATCCTCGCACGTTGAAGGAATACGAG
GAGCCTCTTGACATTATTGATCGCCCTGTCATGACAAAGAGACGCCCAAG
GCATTTTCCAAACCCGCCCTCGAAGCAAAGGCGATTAACGCCTGAACCTC
CACGAAAGGTACGTGGGTTTCAAGTTCAACCATCTTCTAGCAGACTACAG
ACTCCTTTAGTCGGTGCTCGAAGGCTAGTTGATCGGTCACTGGCCCGCCC
CATTTCCTTCAATCCCAAACTCATCGGCGTTTCACTTAAGGCTCAAACAA
AAGCAGGACATTCCACATGCGGAGTTTGGTCCAGTTTTCGTCCGAGTTCC
CGATTAGAAAACAAAACCCCACGCCCTCGGCGTGAACATGATGGCGTGCA
GAATAAAGAAGCAGAAAACAAAGCGGCTGTTGGAGATTCAGCTTCCATAT
TGAAGGAGGAAGATTTCGTAAAAGTCCATGAGGACAGAAACGAAACGCAC
TTGAGCCCATCTATGAGTCTTACATTGGAAATTGAAAGCCAACCAGAAAC
GACAGAAATGCCCGTTGGGTTTAGCGACGTAGATCTTTCAGAAAGACCGA
GGTCATCTTCCCGCCGAGTTGAAGCTGTGCACCGGGCTCTTGGGAAGTTT
GCTCGTACAAAAGAGCGGGATGTGAGAGAGAAGTTCAAACCAGAAAAGAA
AAGGAGTCTGCCGCCATCATGCCCATCTACCCCTCCGAAACAATCTTCTA
GCATTTTGTCGCCTTCTACAGATTTGCCAAGCCCAGACATTGACACGACT
AGACAGCATGCTCTGGTCAAAACGAGCGCAGGTCCAGGACAAGGTCAGAA
AATTGTTGCTTCAGATGATCGTAATGTAACACCAAAAAGTTCCCTCCAAA
GAAGAAAGTCTAATCAAACTCCTTTGAAGCCTTTGAAATCTTCTAAATCA
TCCACAGGAAGGCAGTTGAGACTCAGTCGGTTCTTCAAACCAGTCAGTCT
ATCAAAAGAAGCGAAGGACATTGCACCTATCAATACTATCGAAAAGATGC
TGAAGTCAGCAGATGCTGTCCCCAGAAAGAAATCGTCTCCGTGCTCGAAA
ATTAACATCAATGAAATGGACAATTTCATGAGACGGTCAAACAGAGATTA
G
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