Gvermi3631.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3631.t1
Unique Name	Gvermi3631.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	419

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:3701537..3702793 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709124.1
Preferred name	METTL16
PFAMs	Methyltransf_10
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00003,RC00335
KEGG ko	ko:K06970,ko:K11393,ko:K11853,ko:K13119
KEGG Reaction	R07232
GOs	GO:0000154,GO:0000226,GO:0001510,GO:0002119,GO:0002164,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007275,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008174,GO:0008649,GO:0008757,GO:0008988,GO:0009056,GO:0009057,GO:0009451,GO:0009790,GO:0009791,GO:0009792,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016422,GO:0016433,GO:0016556,GO:0016740,GO:0016741,GO:0017069,GO:0017070,GO:0017148,GO:0019219,GO:0019222,GO:0019439,GO:0022402,GO:0022613,GO:0030629,GO:0031023,GO:0031167,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0032259,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0034248,GO:0034249,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0035613,GO:0040025,GO:0040031,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0043484,GO:0043487,GO:0043488,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0045935,GO:0046483,GO:0046700,GO:0048024,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048569,GO:0048731,GO:0048856,GO:0050684,GO:0050779,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0052907,GO:0060255,GO:0061013,GO:0061014,GO:0061157,GO:0065007,GO:0065008,GO:0070475,GO:0071704,GO:0071840,GO:0080009,GO:0080090,GO:0090304,GO:0097159,GO:0120048,GO:0120049,GO:0140098,GO:0140102,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1903311,GO:1903313,GO:2000112,GO:2000113
Evalue	4.42e-45
EggNOG OGs	COG3129@1\|root,KOG2912@2759\|Eukaryota
EC	2.1.1.181,3.4.19.12
Description	23S rRNA (adenine(1618)-N(6))-methyltransferase activity
COG category	J
BRITE	ko00000,ko01000,ko01002,ko03009,ko03041,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3631	Gvermi3631	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 3701537..3702793 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3631.t1.start1	Gvermi3631.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 3701537..3701539 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3631.t1.CDS1	Gvermi3631.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 3701537..3702793 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3631.t1.exon1	Gvermi3631.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 3701537..3702793 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3631.t1.stop1	Gvermi3631.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 3702791..3702793 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3631.t1	Gvermi3631.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 3701537..3702793 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:3701537..3702793+
coding sequence from alignment at ScGOVlb_41:3701537..3702793+

mRNA sequence

>Gvermi3631.t1 ID=Gvermi3631.t1|Name=Gvermi3631.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=419bp
MKRAAPKQVSCTRKRTRFVEADACVAEAPRYDFEPLIDADKELAKYAVGV
NGHRSIDFSSREATYHLTRVILRHHFDIEFSLPQGHLVPTIPSRVQYLRW
AAGLLAEGSEKQDIVVLDIGTGPSCIYPVLGTRLFPQWKFIATDTDEEAI
QNARHICTVNQLDKIIILEKSGEEKLFCDRARKLSPSLTVCNPPFHAQRC
DGNDPPGTEAQLVTDGGEYNFVRKLAQESVGQGSVAWFTSLIGRKEDLGR
TIRFLRSAQIRAARIKWAELCAGGRTTRWAVAWSFGDERTRVALASGGRS
KWRHEITVSAGRKFGNQLEEKDILGVVRFALCSSGWHAADNKEGVHESPK
CAFRGADQGRLEACELDAFVARQQGTLDFVVLLKVQDRGQLQAEDFKQVC
LGVKEKMLTFLRQLESST*

spliced messenger RNA

>Gvermi3631.t1 ID=Gvermi3631.t1|Name=Gvermi3631.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1257bp|location=Sequence derived from alignment at ScGOVlb_41:3701537..3702793+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAGAGCAGCGCCCAAACAAGTGTCTTGTACTCGGAAGAGGACCAG
GTTTGTGGAAGCCGATGCCTGTGTCGCAGAGGCTCCGCGCTACGACTTTG
AACCTCTTATCGACGCGGACAAAGAACTGGCGAAGTACGCTGTGGGCGTC
AACGGACATCGCTCAATCGACTTCTCGTCTCGTGAGGCAACGTATCATCT
GACGCGCGTGATCCTCAGACATCATTTCGACATCGAGTTCTCCCTCCCTC
AAGGCCATCTTGTTCCCACGATCCCGAGCAGAGTTCAGTATCTCAGATGG
GCGGCTGGTTTACTAGCAGAAGGGAGTGAAAAACAGGATATTGTTGTTCT
GGACATTGGAACTGGTCCATCTTGTATTTACCCTGTGCTAGGGACTCGTC
TGTTTCCTCAGTGGAAATTCATTGCTACGGATACGGACGAAGAAGCCATT
CAAAACGCAAGACACATCTGCACTGTTAACCAGCTAGACAAGATAATCAT
CCTGGAAAAGAGCGGCGAAGAAAAACTATTCTGCGACAGGGCACGCAAAC
TATCGCCATCGCTGACTGTATGCAACCCGCCGTTCCACGCGCAGCGCTGC
GATGGAAACGACCCCCCCGGAACAGAAGCGCAGCTTGTAACAGACGGCGG
CGAGTACAACTTCGTGCGCAAACTGGCGCAGGAATCGGTGGGTCAAGGCA
GTGTGGCGTGGTTCACGAGCCTGATCGGGCGCAAGGAGGACTTGGGCAGA
ACGATAAGGTTTCTTCGCTCGGCGCAGATACGGGCGGCGCGAATCAAGTG
GGCAGAGCTGTGCGCCGGCGGGCGCACGACGCGGTGGGCGGTGGCATGGT
CGTTTGGAGACGAGCGCACGAGAGTGGCTCTCGCAAGCGGCGGCAGGTCG
AAGTGGAGACATGAAATCACGGTGAGCGCGGGACGAAAGTTTGGGAATCA
ACTGGAAGAGAAGGATATACTCGGTGTGGTGCGTTTCGCTCTGTGCTCAT
CAGGATGGCATGCGGCCGACAACAAGGAAGGCGTTCATGAGAGTCCAAAG
TGCGCGTTCCGCGGAGCGGACCAGGGCCGATTGGAAGCATGCGAACTGGA
TGCTTTCGTTGCTAGACAACAAGGCACGTTGGACTTTGTTGTTTTGCTGA
AAGTACAGGACAGAGGCCAGTTGCAAGCTGAGGATTTCAAACAGGTGTGT
CTGGGTGTCAAAGAGAAGATGTTAACGTTTCTTCGGCAGTTGGAATCAAG
CACTTAA

protein sequence of Gvermi3631.t1

>Gvermi3631.t1 ID=Gvermi3631.t1|Name=Gvermi3631.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=419bp
MKRAAPKQVSCTRKRTRFVEADACVAEAPRYDFEPLIDADKELAKYAVGV
NGHRSIDFSSREATYHLTRVILRHHFDIEFSLPQGHLVPTIPSRVQYLRW
AAGLLAEGSEKQDIVVLDIGTGPSCIYPVLGTRLFPQWKFIATDTDEEAI
QNARHICTVNQLDKIIILEKSGEEKLFCDRARKLSPSLTVCNPPFHAQRC
DGNDPPGTEAQLVTDGGEYNFVRKLAQESVGQGSVAWFTSLIGRKEDLGR
TIRFLRSAQIRAARIKWAELCAGGRTTRWAVAWSFGDERTRVALASGGRS
KWRHEITVSAGRKFGNQLEEKDILGVVRFALCSSGWHAADNKEGVHESPK
CAFRGADQGRLEACELDAFVARQQGTLDFVVLLKVQDRGQLQAEDFKQVC
LGVKEKMLTFLRQLESST*

mRNA from alignment at ScGOVlb_41:3701537..3702793+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3631.t1 ID=Gvermi3631.t1|Name=Gvermi3631.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1257bp|location=Sequence derived from alignment at ScGOVlb_41:3701537..3702793+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAAGAGCAGCGCCCAAACAAGTGTCTTGTACTCGGAAGAGGACCAG
GTTTGTGGAAGCCGATGCCTGTGTCGCAGAGGCTCCGCGCTACGACTTTG
AACCTCTTATCGACGCGGACAAAGAACTGGCGAAGTACGCTGTGGGCGTC
AACGGACATCGCTCAATCGACTTCTCGTCTCGTGAGGCAACGTATCATCT
GACGCGCGTGATCCTCAGACATCATTTCGACATCGAGTTCTCCCTCCCTC
AAGGCCATCTTGTTCCCACGATCCCGAGCAGAGTTCAGTATCTCAGATGG
GCGGCTGGTTTACTAGCAGAAGGGAGTGAAAAACAGGATATTGTTGTTCT
GGACATTGGAACTGGTCCATCTTGTATTTACCCTGTGCTAGGGACTCGTC
TGTTTCCTCAGTGGAAATTCATTGCTACGGATACGGACGAAGAAGCCATT
CAAAACGCAAGACACATCTGCACTGTTAACCAGCTAGACAAGATAATCAT
CCTGGAAAAGAGCGGCGAAGAAAAACTATTCTGCGACAGGGCACGCAAAC
TATCGCCATCGCTGACTGTATGCAACCCGCCGTTCCACGCGCAGCGCTGC
GATGGAAACGACCCCCCCGGAACAGAAGCGCAGCTTGTAACAGACGGCGG
CGAGTACAACTTCGTGCGCAAACTGGCGCAGGAATCGGTGGGTCAAGGCA
GTGTGGCGTGGTTCACGAGCCTGATCGGGCGCAAGGAGGACTTGGGCAGA
ACGATAAGGTTTCTTCGCTCGGCGCAGATACGGGCGGCGCGAATCAAGTG
GGCAGAGCTGTGCGCCGGCGGGCGCACGACGCGGTGGGCGGTGGCATGGT
CGTTTGGAGACGAGCGCACGAGAGTGGCTCTCGCAAGCGGCGGCAGGTCG
AAGTGGAGACATGAAATCACGGTGAGCGCGGGACGAAAGTTTGGGAATCA
ACTGGAAGAGAAGGATATACTCGGTGTGGTGCGTTTCGCTCTGTGCTCAT
CAGGATGGCATGCGGCCGACAACAAGGAAGGCGTTCATGAGAGTCCAAAG
TGCGCGTTCCGCGGAGCGGACCAGGGCCGATTGGAAGCATGCGAACTGGA
TGCTTTCGTTGCTAGACAACAAGGCACGTTGGACTTTGTTGTTTTGCTGA
AAGTACAGGACAGAGGCCAGTTGCAAGCTGAGGATTTCAAACAGGTGTGT
CTGGGTGTCAAAGAGAAGATGTTAACGTTTCTTCGGCAGTTGGAATCAAG
CACTTAA

Coding sequence (CDS) from alignment at ScGOVlb_41:3701537..3702793+

>Gvermi3631.t1 ID=Gvermi3631.t1|Name=Gvermi3631.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1257bp|location=Sequence derived from alignment at ScGOVlb_41:3701537..3702793+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAAGAGCAGCGCCCAAACAAGTGTCTTGTACTCGGAAGAGGACCAG
GTTTGTGGAAGCCGATGCCTGTGTCGCAGAGGCTCCGCGCTACGACTTTG
AACCTCTTATCGACGCGGACAAAGAACTGGCGAAGTACGCTGTGGGCGTC
AACGGACATCGCTCAATCGACTTCTCGTCTCGTGAGGCAACGTATCATCT
GACGCGCGTGATCCTCAGACATCATTTCGACATCGAGTTCTCCCTCCCTC
AAGGCCATCTTGTTCCCACGATCCCGAGCAGAGTTCAGTATCTCAGATGG
GCGGCTGGTTTACTAGCAGAAGGGAGTGAAAAACAGGATATTGTTGTTCT
GGACATTGGAACTGGTCCATCTTGTATTTACCCTGTGCTAGGGACTCGTC
TGTTTCCTCAGTGGAAATTCATTGCTACGGATACGGACGAAGAAGCCATT
CAAAACGCAAGACACATCTGCACTGTTAACCAGCTAGACAAGATAATCAT
CCTGGAAAAGAGCGGCGAAGAAAAACTATTCTGCGACAGGGCACGCAAAC
TATCGCCATCGCTGACTGTATGCAACCCGCCGTTCCACGCGCAGCGCTGC
GATGGAAACGACCCCCCCGGAACAGAAGCGCAGCTTGTAACAGACGGCGG
CGAGTACAACTTCGTGCGCAAACTGGCGCAGGAATCGGTGGGTCAAGGCA
GTGTGGCGTGGTTCACGAGCCTGATCGGGCGCAAGGAGGACTTGGGCAGA
ACGATAAGGTTTCTTCGCTCGGCGCAGATACGGGCGGCGCGAATCAAGTG
GGCAGAGCTGTGCGCCGGCGGGCGCACGACGCGGTGGGCGGTGGCATGGT
CGTTTGGAGACGAGCGCACGAGAGTGGCTCTCGCAAGCGGCGGCAGGTCG
AAGTGGAGACATGAAATCACGGTGAGCGCGGGACGAAAGTTTGGGAATCA
ACTGGAAGAGAAGGATATACTCGGTGTGGTGCGTTTCGCTCTGTGCTCAT
CAGGATGGCATGCGGCCGACAACAAGGAAGGCGTTCATGAGAGTCCAAAG
TGCGCGTTCCGCGGAGCGGACCAGGGCCGATTGGAAGCATGCGAACTGGA
TGCTTTCGTTGCTAGACAACAAGGCACGTTGGACTTTGTTGTTTTGCTGA
AAGTACAGGACAGAGGCCAGTTGCAAGCTGAGGATTTCAAACAGGTGTGT
CTGGGTGTCAAAGAGAAGATGTTAACGTTTCTTCGGCAGTTGGAATCAAG
CACTTAA