Gvermi3629.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3629.t1
Unique NameGvermi3629.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3699420..3700016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005850435.1
PFAMsECR1_N,EXOSC1
Max annot lvl3041|Chlorophyta
KEGG koko:K07573
KEGG Pathwayko03018,map03018
KEGG ModuleM00390,M00391
Evalue6.08e-52
EggNOG OGsCOG1096@1|root,KOG3409@2759|Eukaryota,37R6Z@33090|Viridiplantae,34I30@3041|Chlorophyta
DescriptionExosome component EXOSC1/CSL4
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3629Gvermi3629Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 3699420..3700016 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3629.t1.start1Gvermi3629.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 3699420..3699422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3629.t1.CDS1Gvermi3629.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3699420..3700016 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3629.t1.exon1Gvermi3629.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3699420..3700016 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3629.t1.stop1Gvermi3629.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 3700014..3700016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3629.t1Gvermi3629.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 3699420..3700016 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3629.t1 ID=Gvermi3629.t1|Name=Gvermi3629.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=199bp
MEAIKTDRYVTPGERVGEVEHFAPGYGVCVVNNMLVATLLGTLVKEKAKT
SDSKPILNVNSAKYSDGRPLLPDIGSKVTARVTRVTPRGASVEILVIDGK
PVREVFKGVINQQDVRQVEVDKVEIYKCFAPGDVVLAEVISLGDRHSYFL
STAKNELGVIHAKSKAGVVMTPLNWQEMLCPATNTKEFRKVAKENHTP*
back to top

spliced messenger RNA

>Gvermi3629.t1 ID=Gvermi3629.t1|Name=Gvermi3629.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=597bp|location=Sequence derived from alignment at ScGOVlb_41:3699420..3700016+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCAATCAAGACTGATAGGTACGTCACTCCCGGTGAGAGGGTTGG
AGAAGTGGAACATTTTGCTCCAGGTTACGGCGTGTGTGTGGTAAACAATA
TGTTGGTGGCAACCTTGTTAGGCACGTTAGTTAAGGAAAAGGCAAAAACC
TCTGATTCAAAGCCGATTCTGAACGTCAACTCAGCAAAATACTCAGATGG
ACGTCCGCTTTTACCAGATATTGGGTCAAAGGTCACCGCAAGGGTCACTC
GTGTCACCCCACGCGGTGCTTCCGTTGAAATCCTGGTGATTGACGGAAAA
CCTGTGCGAGAAGTTTTCAAAGGAGTAATTAACCAACAAGATGTGAGGCA
AGTGGAGGTCGATAAGGTCGAAATTTACAAATGCTTTGCTCCGGGAGATG
TTGTTCTTGCTGAAGTGATAAGTCTCGGAGATCGTCATTCATACTTTCTG
AGCACTGCTAAAAACGAACTTGGTGTGATCCACGCGAAGAGCAAGGCGGG
TGTCGTGATGACTCCTTTAAATTGGCAGGAAATGTTGTGTCCGGCGACCA
ATACCAAGGAGTTCCGAAAAGTTGCGAAGGAAAACCATACCCCGTAG
back to top

protein sequence of Gvermi3629.t1

>Gvermi3629.t1 ID=Gvermi3629.t1|Name=Gvermi3629.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=199bp
MEAIKTDRYVTPGERVGEVEHFAPGYGVCVVNNMLVATLLGTLVKEKAKT
SDSKPILNVNSAKYSDGRPLLPDIGSKVTARVTRVTPRGASVEILVIDGK
PVREVFKGVINQQDVRQVEVDKVEIYKCFAPGDVVLAEVISLGDRHSYFL
STAKNELGVIHAKSKAGVVMTPLNWQEMLCPATNTKEFRKVAKENHTP*
back to top

mRNA from alignment at ScGOVlb_41:3699420..3700016+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3629.t1 ID=Gvermi3629.t1|Name=Gvermi3629.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=597bp|location=Sequence derived from alignment at ScGOVlb_41:3699420..3700016+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGCAATCAAGACTGATAGGTACGTCACTCCCGGTGAGAGGGTTGG
AGAAGTGGAACATTTTGCTCCAGGTTACGGCGTGTGTGTGGTAAACAATA
TGTTGGTGGCAACCTTGTTAGGCACGTTAGTTAAGGAAAAGGCAAAAACC
TCTGATTCAAAGCCGATTCTGAACGTCAACTCAGCAAAATACTCAGATGG
ACGTCCGCTTTTACCAGATATTGGGTCAAAGGTCACCGCAAGGGTCACTC
GTGTCACCCCACGCGGTGCTTCCGTTGAAATCCTGGTGATTGACGGAAAA
CCTGTGCGAGAAGTTTTCAAAGGAGTAATTAACCAACAAGATGTGAGGCA
AGTGGAGGTCGATAAGGTCGAAATTTACAAATGCTTTGCTCCGGGAGATG
TTGTTCTTGCTGAAGTGATAAGTCTCGGAGATCGTCATTCATACTTTCTG
AGCACTGCTAAAAACGAACTTGGTGTGATCCACGCGAAGAGCAAGGCGGG
TGTCGTGATGACTCCTTTAAATTGGCAGGAAATGTTGTGTCCGGCGACCA
ATACCAAGGAGTTCCGAAAAGTTGCGAAGGAAAACCATACCCCGTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_41:3699420..3700016+

>Gvermi3629.t1 ID=Gvermi3629.t1|Name=Gvermi3629.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=597bp|location=Sequence derived from alignment at ScGOVlb_41:3699420..3700016+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGCAATCAAGACTGATAGGTACGTCACTCCCGGTGAGAGGGTTGG
AGAAGTGGAACATTTTGCTCCAGGTTACGGCGTGTGTGTGGTAAACAATA
TGTTGGTGGCAACCTTGTTAGGCACGTTAGTTAAGGAAAAGGCAAAAACC
TCTGATTCAAAGCCGATTCTGAACGTCAACTCAGCAAAATACTCAGATGG
ACGTCCGCTTTTACCAGATATTGGGTCAAAGGTCACCGCAAGGGTCACTC
GTGTCACCCCACGCGGTGCTTCCGTTGAAATCCTGGTGATTGACGGAAAA
CCTGTGCGAGAAGTTTTCAAAGGAGTAATTAACCAACAAGATGTGAGGCA
AGTGGAGGTCGATAAGGTCGAAATTTACAAATGCTTTGCTCCGGGAGATG
TTGTTCTTGCTGAAGTGATAAGTCTCGGAGATCGTCATTCATACTTTCTG
AGCACTGCTAAAAACGAACTTGGTGTGATCCACGCGAAGAGCAAGGCGGG
TGTCGTGATGACTCCTTTAAATTGGCAGGAAATGTTGTGTCCGGCGACCA
ATACCAAGGAGTTCCGAAAAGTTGCGAAGGAAAACCATACCCCGTAG
back to top