Gvermi3626.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3626.t1
Unique Name	Gvermi3626.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	368

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:3652525..3653628 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	157072.XP_008862793.1
PFAMs	PDCD2_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14801
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Evalue	5.17e-18
EggNOG OGs	KOG2061@1\|root,KOG2061@2759\|Eukaryota
Description	positive regulation of hematopoietic stem cell proliferation
COG category	O
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3626	Gvermi3626	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 3652525..3653628 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3626.t1.stop1	Gvermi3626.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 3652525..3652527 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3626.t1.CDS1	Gvermi3626.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 3652525..3653628 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3626.t1.exon1	Gvermi3626.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 3652525..3653628 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3626.t1.start1	Gvermi3626.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 3653626..3653628 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3626.t1	Gvermi3626.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 3652525..3653628 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:3652525..3653628-
coding sequence from alignment at ScGOVlb_41:3652525..3653628-

mRNA sequence

>Gvermi3626.t1 ID=Gvermi3626.t1|Name=Gvermi3626.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=368bp
MSSGCILGFASSEWKSESGAWYDTHIGGIACWPEGFCIDIPPCPICRRDR
TLVLQAYAPHYKHSQREIYLYACNYIQCSTQSESWFAVRVTNVEKVSNND
GQNSIPSTRPGNNVFGEERQSIKWDSDSDSDTSVSGSEALVQELESLSLA
LTQNETKKVGVAGKQTNKKAATRSSVVAQLSTNSAKQPKSTPLASFYVEV
DNEPALEHRNKDKEQVSRLLSKYNEDESFRSKRGIQEQWADEKDEEDKPE
ALSLEQFNERIARAPEQILRYDLGGEPLWPRYPPPQIKSDTCECGMPMIF
EVQLLGSCLHYLRPEESLPPEQKEAGMNFASIAIYTCAGDCEKTKPIAEN
ASFKAFGQQICVQQEDW*

spliced messenger RNA

>Gvermi3626.t1 ID=Gvermi3626.t1|Name=Gvermi3626.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at ScGOVlb_41:3652525..3653628- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCTGGCTGCATTCTGGGATTTGCTTCCTCAGAATGGAAATCCGA
AAGTGGCGCATGGTATGATACTCACATTGGAGGTATCGCCTGCTGGCCTG
AAGGTTTTTGCATAGATATTCCGCCTTGTCCGATTTGTCGGCGTGACCGA
ACTCTTGTGCTGCAGGCCTATGCTCCACACTACAAGCATTCGCAAAGGGA
AATATACTTATACGCTTGCAACTACATTCAATGTTCCACACAATCAGAGT
CGTGGTTCGCTGTTCGTGTGACAAACGTTGAAAAAGTGAGCAACAACGAC
GGTCAGAACTCCATCCCCTCCACTCGCCCGGGGAACAACGTATTTGGGGA
AGAGCGTCAGAGTATCAAGTGGGATTCAGATTCAGATTCAGACACAAGTG
TTTCCGGATCAGAGGCTTTGGTGCAAGAATTAGAATCGCTTTCACTGGCT
CTTACACAAAATGAAACAAAAAAGGTCGGGGTGGCGGGGAAACAAACGAA
TAAGAAGGCAGCCACACGATCATCTGTGGTCGCACAACTTAGTACAAACA
GTGCCAAGCAGCCAAAATCGACACCGCTAGCTTCATTTTACGTTGAAGTT
GATAATGAACCTGCTTTGGAACACCGAAACAAAGACAAGGAGCAGGTCAG
TCGTTTACTAAGCAAGTACAACGAAGATGAAAGTTTTAGAAGCAAAAGGG
GAATACAAGAACAGTGGGCAGATGAAAAAGATGAAGAGGATAAGCCTGAA
GCACTCTCCCTCGAACAATTCAACGAAAGAATTGCAAGAGCTCCGGAGCA
GATCTTGCGTTATGATCTTGGAGGAGAACCATTGTGGCCTCGATACCCCC
CGCCCCAAATTAAGTCAGATACATGCGAGTGCGGGATGCCCATGATCTTC
GAGGTCCAATTGCTTGGTTCCTGTCTACACTACTTGAGACCCGAAGAGTC
CCTGCCGCCAGAACAGAAAGAAGCGGGAATGAACTTTGCTTCGATCGCAA
TATACACATGTGCCGGTGACTGCGAAAAGACCAAGCCGATAGCAGAGAAT
GCGTCTTTCAAGGCATTTGGACAGCAAATCTGCGTCCAGCAAGAGGATTG
GTGA

protein sequence of Gvermi3626.t1

>Gvermi3626.t1 ID=Gvermi3626.t1|Name=Gvermi3626.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=368bp
MSSGCILGFASSEWKSESGAWYDTHIGGIACWPEGFCIDIPPCPICRRDR
TLVLQAYAPHYKHSQREIYLYACNYIQCSTQSESWFAVRVTNVEKVSNND
GQNSIPSTRPGNNVFGEERQSIKWDSDSDSDTSVSGSEALVQELESLSLA
LTQNETKKVGVAGKQTNKKAATRSSVVAQLSTNSAKQPKSTPLASFYVEV
DNEPALEHRNKDKEQVSRLLSKYNEDESFRSKRGIQEQWADEKDEEDKPE
ALSLEQFNERIARAPEQILRYDLGGEPLWPRYPPPQIKSDTCECGMPMIF
EVQLLGSCLHYLRPEESLPPEQKEAGMNFASIAIYTCAGDCEKTKPIAEN
ASFKAFGQQICVQQEDW*

mRNA from alignment at ScGOVlb_41:3652525..3653628-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3626.t1 ID=Gvermi3626.t1|Name=Gvermi3626.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at ScGOVlb_41:3652525..3653628- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCATCTGGCTGCATTCTGGGATTTGCTTCCTCAGAATGGAAATCCGA
AAGTGGCGCATGGTATGATACTCACATTGGAGGTATCGCCTGCTGGCCTG
AAGGTTTTTGCATAGATATTCCGCCTTGTCCGATTTGTCGGCGTGACCGA
ACTCTTGTGCTGCAGGCCTATGCTCCACACTACAAGCATTCGCAAAGGGA
AATATACTTATACGCTTGCAACTACATTCAATGTTCCACACAATCAGAGT
CGTGGTTCGCTGTTCGTGTGACAAACGTTGAAAAAGTGAGCAACAACGAC
GGTCAGAACTCCATCCCCTCCACTCGCCCGGGGAACAACGTATTTGGGGA
AGAGCGTCAGAGTATCAAGTGGGATTCAGATTCAGATTCAGACACAAGTG
TTTCCGGATCAGAGGCTTTGGTGCAAGAATTAGAATCGCTTTCACTGGCT
CTTACACAAAATGAAACAAAAAAGGTCGGGGTGGCGGGGAAACAAACGAA
TAAGAAGGCAGCCACACGATCATCTGTGGTCGCACAACTTAGTACAAACA
GTGCCAAGCAGCCAAAATCGACACCGCTAGCTTCATTTTACGTTGAAGTT
GATAATGAACCTGCTTTGGAACACCGAAACAAAGACAAGGAGCAGGTCAG
TCGTTTACTAAGCAAGTACAACGAAGATGAAAGTTTTAGAAGCAAAAGGG
GAATACAAGAACAGTGGGCAGATGAAAAAGATGAAGAGGATAAGCCTGAA
GCACTCTCCCTCGAACAATTCAACGAAAGAATTGCAAGAGCTCCGGAGCA
GATCTTGCGTTATGATCTTGGAGGAGAACCATTGTGGCCTCGATACCCCC
CGCCCCAAATTAAGTCAGATACATGCGAGTGCGGGATGCCCATGATCTTC
GAGGTCCAATTGCTTGGTTCCTGTCTACACTACTTGAGACCCGAAGAGTC
CCTGCCGCCAGAACAGAAAGAAGCGGGAATGAACTTTGCTTCGATCGCAA
TATACACATGTGCCGGTGACTGCGAAAAGACCAAGCCGATAGCAGAGAAT
GCGTCTTTCAAGGCATTTGGACAGCAAATCTGCGTCCAGCAAGAGGATTG
GTGA

Coding sequence (CDS) from alignment at ScGOVlb_41:3652525..3653628-

>Gvermi3626.t1 ID=Gvermi3626.t1|Name=Gvermi3626.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1104bp|location=Sequence derived from alignment at ScGOVlb_41:3652525..3653628- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCATCTGGCTGCATTCTGGGATTTGCTTCCTCAGAATGGAAATCCGA
AAGTGGCGCATGGTATGATACTCACATTGGAGGTATCGCCTGCTGGCCTG
AAGGTTTTTGCATAGATATTCCGCCTTGTCCGATTTGTCGGCGTGACCGA
ACTCTTGTGCTGCAGGCCTATGCTCCACACTACAAGCATTCGCAAAGGGA
AATATACTTATACGCTTGCAACTACATTCAATGTTCCACACAATCAGAGT
CGTGGTTCGCTGTTCGTGTGACAAACGTTGAAAAAGTGAGCAACAACGAC
GGTCAGAACTCCATCCCCTCCACTCGCCCGGGGAACAACGTATTTGGGGA
AGAGCGTCAGAGTATCAAGTGGGATTCAGATTCAGATTCAGACACAAGTG
TTTCCGGATCAGAGGCTTTGGTGCAAGAATTAGAATCGCTTTCACTGGCT
CTTACACAAAATGAAACAAAAAAGGTCGGGGTGGCGGGGAAACAAACGAA
TAAGAAGGCAGCCACACGATCATCTGTGGTCGCACAACTTAGTACAAACA
GTGCCAAGCAGCCAAAATCGACACCGCTAGCTTCATTTTACGTTGAAGTT
GATAATGAACCTGCTTTGGAACACCGAAACAAAGACAAGGAGCAGGTCAG
TCGTTTACTAAGCAAGTACAACGAAGATGAAAGTTTTAGAAGCAAAAGGG
GAATACAAGAACAGTGGGCAGATGAAAAAGATGAAGAGGATAAGCCTGAA
GCACTCTCCCTCGAACAATTCAACGAAAGAATTGCAAGAGCTCCGGAGCA
GATCTTGCGTTATGATCTTGGAGGAGAACCATTGTGGCCTCGATACCCCC
CGCCCCAAATTAAGTCAGATACATGCGAGTGCGGGATGCCCATGATCTTC
GAGGTCCAATTGCTTGGTTCCTGTCTACACTACTTGAGACCCGAAGAGTC
CCTGCCGCCAGAACAGAAAGAAGCGGGAATGAACTTTGCTTCGATCGCAA
TATACACATGTGCCGGTGACTGCGAAAAGACCAAGCCGATAGCAGAGAAT
GCGTCTTTCAAGGCATTTGGACAGCAAATCTGCGTCCAGCAAGAGGATTG
GTGA