Gvermi3624.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3624.t1
Unique Name	Gvermi3624.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	754

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:3647927..3650188 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38727.Pavir.Ba03442.1.p
PFAMs	DCP1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12611
KEGG Pathway	ko03018,map03018
KEGG Module	M00395
Evalue	4.72e-19
EggNOG OGs	KOG2868@1\|root,KOG2868@2759\|Eukaryota,37SUR@33090\|Viridiplantae,3G79R@35493\|Streptophyta,3KNC4@4447\|Liliopsida,3IEA5@38820\|Poales
Description	Dcp1-like decapping family
COG category	AK
BRITE	ko00000,ko00001,ko00002,ko01000,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3624	Gvermi3624	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 3647927..3650188 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3624.t1.start1	Gvermi3624.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 3647927..3647929 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3624.t1.CDS1	Gvermi3624.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 3647927..3650188 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3624.t1.exon1	Gvermi3624.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 3647927..3650188 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3624.t1.stop1	Gvermi3624.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 3650186..3650188 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3624.t1	Gvermi3624.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 3647927..3650188 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:3647927..3650188+
coding sequence from alignment at ScGOVlb_41:3647927..3650188+

mRNA sequence

>Gvermi3624.t1 ID=Gvermi3624.t1|Name=Gvermi3624.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=754bp
MTAGIDFDPARRDAIAAKMNLSVLQRADPAVRKVLKLASHVCLYQLDDNH
AWRRLDIEGSLFVVELDVDHPNNSARTRHRIVIINRKSLDNYSDDVVVGN
KEIELQDQMIMYTNSKQKTIGIWFYQKPEASSLFQLLQALVQGKDPSPPQ
SPPAEIPSSSHPPDTSASQSTESARVLDNSPRSRRTQKRAPRNVNLKNAR
TRQVANPRLPKPAVDAPQQPSGQSTTKETPSVQDNSLERFFPGLKHTHGV
AGATLPPDVNTSSVMESVAVTTLTSDIESNKKTATEFKPTSEIDEAIIIA
SDNGLPDSILSKPSSSSDHLGVSDALNAIRSKAEKKPRPDPRRKTSPKPK
PASKMPTPLKFQRPKRGPPASKPGFHDASAQRPSALSVPLNAQAFEARYT
AERRKRTLSPPQKSVHEQVPNPVPPTTIDRIKGNGQASARVASMLPSEES
KRNAPSIVQSGSRPVQAAEPKTETLGRKVEAQAEARVAPAASTANEKRTH
LPAAPKSQEVDTDPHLPRGEVKISAGLPLRNGTGTMEDARRHLQALSMPL
DTLNDPLLRGMPPFRFPSGDMPIAHTAPIMPSPIAPPPQPPAPFTAGMHP
QMAMLMQHQLFLQQQQFLAQQQHQRRMQLQNIPLQSMPTVHESESRSAGN
LSNDFSSSHPTSAVDSAADLMRMINAGGRNGAVQKPREREMSEEEKGKSV
AQGVAVADRKGELSTCSAQKMDRSEFRAVLQRMLTDKRLFESVYANYVSA
NEN*

spliced messenger RNA

>Gvermi3624.t1 ID=Gvermi3624.t1|Name=Gvermi3624.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2262bp|location=Sequence derived from alignment at ScGOVlb_41:3647927..3650188+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCAGGGATCGACTTTGACCCAGCGCGTCGTGATGCCATCGCCGC
AAAAATGAACCTATCCGTGCTGCAGAGGGCTGACCCCGCAGTTAGGAAAG
TGCTCAAGCTCGCTTCGCACGTCTGCCTCTACCAGCTCGACGACAACCAC
GCGTGGCGTCGCCTTGACATTGAAGGCTCTCTCTTCGTCGTCGAGCTCGA
TGTAGACCACCCAAACAACTCCGCTCGCACCCGTCACCGCATCGTAATCA
TCAACCGAAAAAGCCTGGACAACTACTCCGACGACGTCGTCGTGGGCAAC
AAGGAAATCGAGCTCCAAGACCAGATGATCATGTACACAAACTCCAAGCA
GAAAACCATCGGAATCTGGTTCTATCAGAAACCCGAAGCTTCTTCTCTAT
TCCAACTCCTCCAAGCTCTCGTACAAGGGAAAGACCCCTCTCCGCCCCAG
TCGCCGCCCGCTGAAATACCGTCCTCCTCGCACCCTCCTGACACTTCTGC
CTCACAATCCACGGAATCCGCGCGCGTTCTGGACAACTCGCCGCGCTCGC
GCCGCACGCAGAAGCGCGCGCCGCGTAACGTAAACCTCAAGAACGCAAGG
ACTCGTCAGGTCGCCAACCCGCGTTTGCCGAAGCCTGCCGTCGACGCCCC
CCAGCAGCCCAGCGGCCAATCCACAACCAAAGAAACACCGAGTGTGCAGG
ACAACTCGCTTGAGCGTTTCTTTCCCGGACTCAAGCACACCCATGGCGTC
GCGGGCGCCACGTTACCTCCAGACGTCAACACATCTTCTGTTATGGAGAG
TGTTGCTGTAACTACGCTAACATCCGACATTGAGTCGAACAAGAAAACTG
CCACTGAGTTTAAACCCACATCTGAGATTGACGAGGCTATCATCATCGCA
TCCGACAACGGCTTACCGGATTCCATTCTCTCCAAGCCTTCGTCATCTTC
TGATCACCTTGGTGTGTCAGATGCTTTGAACGCAATACGCTCAAAAGCCG
AGAAGAAGCCGAGGCCCGATCCAAGGCGCAAAACTTCTCCAAAACCGAAA
CCCGCTTCGAAGATGCCCACACCGCTCAAGTTTCAAAGGCCGAAACGAGG
ACCCCCTGCATCCAAGCCGGGATTTCATGACGCGAGTGCGCAACGTCCGT
CTGCTCTATCGGTCCCGCTGAACGCTCAGGCATTCGAAGCCCGATATACC
GCTGAGCGGCGAAAGCGAACTTTGTCTCCACCGCAGAAGAGTGTTCATGA
ACAGGTGCCAAATCCTGTGCCGCCGACAACGATCGATCGCATCAAAGGCA
ACGGTCAAGCTTCGGCGAGAGTTGCATCAATGCTCCCTAGCGAAGAGAGC
AAGAGAAACGCTCCTTCTATTGTTCAAAGCGGCTCACGACCCGTTCAAGC
CGCTGAGCCAAAGACGGAGACTCTTGGAAGGAAGGTTGAAGCGCAGGCAG
AAGCACGAGTCGCGCCCGCCGCTAGCACGGCCAACGAAAAAAGAACGCAC
CTTCCTGCCGCACCCAAGTCGCAGGAAGTTGACACAGACCCCCACCTGCC
TCGTGGTGAAGTTAAAATAAGTGCTGGACTACCGTTACGTAATGGTACCG
GAACCATGGAGGATGCTCGTCGTCACCTGCAGGCATTGTCTATGCCGCTG
GACACTTTGAACGACCCCCTTTTGCGCGGTATGCCGCCGTTCCGATTCCC
GTCCGGGGATATGCCGATCGCACATACCGCACCTATCATGCCGTCTCCCA
TTGCTCCGCCGCCGCAGCCGCCAGCGCCTTTTACTGCCGGGATGCACCCG
CAGATGGCAATGTTGATGCAGCACCAATTGTTCTTGCAACAGCAGCAATT
CTTAGCTCAACAGCAACACCAACGTCGGATGCAATTGCAGAATATCCCGC
TGCAGTCAATGCCTACCGTACACGAGTCTGAATCGCGTAGCGCGGGTAAC
CTGTCGAATGATTTTTCTTCCTCACATCCTACTAGTGCTGTCGACTCTGC
TGCAGATCTCATGCGAATGATAAATGCGGGCGGTAGGAACGGTGCGGTAC
AGAAGCCCAGAGAGCGGGAGATGAGCGAGGAAGAAAAGGGCAAGTCTGTT
GCGCAAGGCGTTGCAGTGGCTGATAGAAAGGGAGAGCTTTCAACTTGTTC
CGCACAAAAGATGGACCGTTCGGAGTTCCGTGCAGTTCTGCAGCGCATGC
TCACGGACAAGCGACTGTTTGAGAGTGTGTATGCCAACTACGTTTCCGCA
AATGAGAACTAG

protein sequence of Gvermi3624.t1

>Gvermi3624.t1 ID=Gvermi3624.t1|Name=Gvermi3624.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=754bp
MTAGIDFDPARRDAIAAKMNLSVLQRADPAVRKVLKLASHVCLYQLDDNH
AWRRLDIEGSLFVVELDVDHPNNSARTRHRIVIINRKSLDNYSDDVVVGN
KEIELQDQMIMYTNSKQKTIGIWFYQKPEASSLFQLLQALVQGKDPSPPQ
SPPAEIPSSSHPPDTSASQSTESARVLDNSPRSRRTQKRAPRNVNLKNAR
TRQVANPRLPKPAVDAPQQPSGQSTTKETPSVQDNSLERFFPGLKHTHGV
AGATLPPDVNTSSVMESVAVTTLTSDIESNKKTATEFKPTSEIDEAIIIA
SDNGLPDSILSKPSSSSDHLGVSDALNAIRSKAEKKPRPDPRRKTSPKPK
PASKMPTPLKFQRPKRGPPASKPGFHDASAQRPSALSVPLNAQAFEARYT
AERRKRTLSPPQKSVHEQVPNPVPPTTIDRIKGNGQASARVASMLPSEES
KRNAPSIVQSGSRPVQAAEPKTETLGRKVEAQAEARVAPAASTANEKRTH
LPAAPKSQEVDTDPHLPRGEVKISAGLPLRNGTGTMEDARRHLQALSMPL
DTLNDPLLRGMPPFRFPSGDMPIAHTAPIMPSPIAPPPQPPAPFTAGMHP
QMAMLMQHQLFLQQQQFLAQQQHQRRMQLQNIPLQSMPTVHESESRSAGN
LSNDFSSSHPTSAVDSAADLMRMINAGGRNGAVQKPREREMSEEEKGKSV
AQGVAVADRKGELSTCSAQKMDRSEFRAVLQRMLTDKRLFESVYANYVSA
NEN*

mRNA from alignment at ScGOVlb_41:3647927..3650188+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3624.t1 ID=Gvermi3624.t1|Name=Gvermi3624.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2262bp|location=Sequence derived from alignment at ScGOVlb_41:3647927..3650188+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGCAGGGATCGACTTTGACCCAGCGCGTCGTGATGCCATCGCCGC
AAAAATGAACCTATCCGTGCTGCAGAGGGCTGACCCCGCAGTTAGGAAAG
TGCTCAAGCTCGCTTCGCACGTCTGCCTCTACCAGCTCGACGACAACCAC
GCGTGGCGTCGCCTTGACATTGAAGGCTCTCTCTTCGTCGTCGAGCTCGA
TGTAGACCACCCAAACAACTCCGCTCGCACCCGTCACCGCATCGTAATCA
TCAACCGAAAAAGCCTGGACAACTACTCCGACGACGTCGTCGTGGGCAAC
AAGGAAATCGAGCTCCAAGACCAGATGATCATGTACACAAACTCCAAGCA
GAAAACCATCGGAATCTGGTTCTATCAGAAACCCGAAGCTTCTTCTCTAT
TCCAACTCCTCCAAGCTCTCGTACAAGGGAAAGACCCCTCTCCGCCCCAG
TCGCCGCCCGCTGAAATACCGTCCTCCTCGCACCCTCCTGACACTTCTGC
CTCACAATCCACGGAATCCGCGCGCGTTCTGGACAACTCGCCGCGCTCGC
GCCGCACGCAGAAGCGCGCGCCGCGTAACGTAAACCTCAAGAACGCAAGG
ACTCGTCAGGTCGCCAACCCGCGTTTGCCGAAGCCTGCCGTCGACGCCCC
CCAGCAGCCCAGCGGCCAATCCACAACCAAAGAAACACCGAGTGTGCAGG
ACAACTCGCTTGAGCGTTTCTTTCCCGGACTCAAGCACACCCATGGCGTC
GCGGGCGCCACGTTACCTCCAGACGTCAACACATCTTCTGTTATGGAGAG
TGTTGCTGTAACTACGCTAACATCCGACATTGAGTCGAACAAGAAAACTG
CCACTGAGTTTAAACCCACATCTGAGATTGACGAGGCTATCATCATCGCA
TCCGACAACGGCTTACCGGATTCCATTCTCTCCAAGCCTTCGTCATCTTC
TGATCACCTTGGTGTGTCAGATGCTTTGAACGCAATACGCTCAAAAGCCG
AGAAGAAGCCGAGGCCCGATCCAAGGCGCAAAACTTCTCCAAAACCGAAA
CCCGCTTCGAAGATGCCCACACCGCTCAAGTTTCAAAGGCCGAAACGAGG
ACCCCCTGCATCCAAGCCGGGATTTCATGACGCGAGTGCGCAACGTCCGT
CTGCTCTATCGGTCCCGCTGAACGCTCAGGCATTCGAAGCCCGATATACC
GCTGAGCGGCGAAAGCGAACTTTGTCTCCACCGCAGAAGAGTGTTCATGA
ACAGGTGCCAAATCCTGTGCCGCCGACAACGATCGATCGCATCAAAGGCA
ACGGTCAAGCTTCGGCGAGAGTTGCATCAATGCTCCCTAGCGAAGAGAGC
AAGAGAAACGCTCCTTCTATTGTTCAAAGCGGCTCACGACCCGTTCAAGC
CGCTGAGCCAAAGACGGAGACTCTTGGAAGGAAGGTTGAAGCGCAGGCAG
AAGCACGAGTCGCGCCCGCCGCTAGCACGGCCAACGAAAAAAGAACGCAC
CTTCCTGCCGCACCCAAGTCGCAGGAAGTTGACACAGACCCCCACCTGCC
TCGTGGTGAAGTTAAAATAAGTGCTGGACTACCGTTACGTAATGGTACCG
GAACCATGGAGGATGCTCGTCGTCACCTGCAGGCATTGTCTATGCCGCTG
GACACTTTGAACGACCCCCTTTTGCGCGGTATGCCGCCGTTCCGATTCCC
GTCCGGGGATATGCCGATCGCACATACCGCACCTATCATGCCGTCTCCCA
TTGCTCCGCCGCCGCAGCCGCCAGCGCCTTTTACTGCCGGGATGCACCCG
CAGATGGCAATGTTGATGCAGCACCAATTGTTCTTGCAACAGCAGCAATT
CTTAGCTCAACAGCAACACCAACGTCGGATGCAATTGCAGAATATCCCGC
TGCAGTCAATGCCTACCGTACACGAGTCTGAATCGCGTAGCGCGGGTAAC
CTGTCGAATGATTTTTCTTCCTCACATCCTACTAGTGCTGTCGACTCTGC
TGCAGATCTCATGCGAATGATAAATGCGGGCGGTAGGAACGGTGCGGTAC
AGAAGCCCAGAGAGCGGGAGATGAGCGAGGAAGAAAAGGGCAAGTCTGTT
GCGCAAGGCGTTGCAGTGGCTGATAGAAAGGGAGAGCTTTCAACTTGTTC
CGCACAAAAGATGGACCGTTCGGAGTTCCGTGCAGTTCTGCAGCGCATGC
TCACGGACAAGCGACTGTTTGAGAGTGTGTATGCCAACTACGTTTCCGCA
AATGAGAACTAG

Coding sequence (CDS) from alignment at ScGOVlb_41:3647927..3650188+

>Gvermi3624.t1 ID=Gvermi3624.t1|Name=Gvermi3624.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2262bp|location=Sequence derived from alignment at ScGOVlb_41:3647927..3650188+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGCAGGGATCGACTTTGACCCAGCGCGTCGTGATGCCATCGCCGC
AAAAATGAACCTATCCGTGCTGCAGAGGGCTGACCCCGCAGTTAGGAAAG
TGCTCAAGCTCGCTTCGCACGTCTGCCTCTACCAGCTCGACGACAACCAC
GCGTGGCGTCGCCTTGACATTGAAGGCTCTCTCTTCGTCGTCGAGCTCGA
TGTAGACCACCCAAACAACTCCGCTCGCACCCGTCACCGCATCGTAATCA
TCAACCGAAAAAGCCTGGACAACTACTCCGACGACGTCGTCGTGGGCAAC
AAGGAAATCGAGCTCCAAGACCAGATGATCATGTACACAAACTCCAAGCA
GAAAACCATCGGAATCTGGTTCTATCAGAAACCCGAAGCTTCTTCTCTAT
TCCAACTCCTCCAAGCTCTCGTACAAGGGAAAGACCCCTCTCCGCCCCAG
TCGCCGCCCGCTGAAATACCGTCCTCCTCGCACCCTCCTGACACTTCTGC
CTCACAATCCACGGAATCCGCGCGCGTTCTGGACAACTCGCCGCGCTCGC
GCCGCACGCAGAAGCGCGCGCCGCGTAACGTAAACCTCAAGAACGCAAGG
ACTCGTCAGGTCGCCAACCCGCGTTTGCCGAAGCCTGCCGTCGACGCCCC
CCAGCAGCCCAGCGGCCAATCCACAACCAAAGAAACACCGAGTGTGCAGG
ACAACTCGCTTGAGCGTTTCTTTCCCGGACTCAAGCACACCCATGGCGTC
GCGGGCGCCACGTTACCTCCAGACGTCAACACATCTTCTGTTATGGAGAG
TGTTGCTGTAACTACGCTAACATCCGACATTGAGTCGAACAAGAAAACTG
CCACTGAGTTTAAACCCACATCTGAGATTGACGAGGCTATCATCATCGCA
TCCGACAACGGCTTACCGGATTCCATTCTCTCCAAGCCTTCGTCATCTTC
TGATCACCTTGGTGTGTCAGATGCTTTGAACGCAATACGCTCAAAAGCCG
AGAAGAAGCCGAGGCCCGATCCAAGGCGCAAAACTTCTCCAAAACCGAAA
CCCGCTTCGAAGATGCCCACACCGCTCAAGTTTCAAAGGCCGAAACGAGG
ACCCCCTGCATCCAAGCCGGGATTTCATGACGCGAGTGCGCAACGTCCGT
CTGCTCTATCGGTCCCGCTGAACGCTCAGGCATTCGAAGCCCGATATACC
GCTGAGCGGCGAAAGCGAACTTTGTCTCCACCGCAGAAGAGTGTTCATGA
ACAGGTGCCAAATCCTGTGCCGCCGACAACGATCGATCGCATCAAAGGCA
ACGGTCAAGCTTCGGCGAGAGTTGCATCAATGCTCCCTAGCGAAGAGAGC
AAGAGAAACGCTCCTTCTATTGTTCAAAGCGGCTCACGACCCGTTCAAGC
CGCTGAGCCAAAGACGGAGACTCTTGGAAGGAAGGTTGAAGCGCAGGCAG
AAGCACGAGTCGCGCCCGCCGCTAGCACGGCCAACGAAAAAAGAACGCAC
CTTCCTGCCGCACCCAAGTCGCAGGAAGTTGACACAGACCCCCACCTGCC
TCGTGGTGAAGTTAAAATAAGTGCTGGACTACCGTTACGTAATGGTACCG
GAACCATGGAGGATGCTCGTCGTCACCTGCAGGCATTGTCTATGCCGCTG
GACACTTTGAACGACCCCCTTTTGCGCGGTATGCCGCCGTTCCGATTCCC
GTCCGGGGATATGCCGATCGCACATACCGCACCTATCATGCCGTCTCCCA
TTGCTCCGCCGCCGCAGCCGCCAGCGCCTTTTACTGCCGGGATGCACCCG
CAGATGGCAATGTTGATGCAGCACCAATTGTTCTTGCAACAGCAGCAATT
CTTAGCTCAACAGCAACACCAACGTCGGATGCAATTGCAGAATATCCCGC
TGCAGTCAATGCCTACCGTACACGAGTCTGAATCGCGTAGCGCGGGTAAC
CTGTCGAATGATTTTTCTTCCTCACATCCTACTAGTGCTGTCGACTCTGC
TGCAGATCTCATGCGAATGATAAATGCGGGCGGTAGGAACGGTGCGGTAC
AGAAGCCCAGAGAGCGGGAGATGAGCGAGGAAGAAAAGGGCAAGTCTGTT
GCGCAAGGCGTTGCAGTGGCTGATAGAAAGGGAGAGCTTTCAACTTGTTC
CGCACAAAAGATGGACCGTTCGGAGTTCCGTGCAGTTCTGCAGCGCATGC
TCACGGACAAGCGACTGTTTGAGAGTGTGTATGCCAACTACGTTTCCGCA
AATGAGAACTAG