Gvermi3596.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3596.t1
Unique NameGvermi3596.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length135
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:3514940..3515344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3596Gvermi3596Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 3514940..3515344 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3596.t1.start1Gvermi3596.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 3514940..3514942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3596.t1.CDS1Gvermi3596.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 3514940..3515344 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3596.t1.exon1Gvermi3596.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 3514940..3515344 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3596.t1.stop1Gvermi3596.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 3515342..3515344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3596.t1Gvermi3596.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 3514940..3515344 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3596.t1 ID=Gvermi3596.t1|Name=Gvermi3596.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=135bp
MRVVWSTSSHESEVLAITLLNNAMLNDGTLTNVKLQFVTSAKERQREQLE
GTATVSMDTHLLAIDVFTRIENLLEDNESVPQASDNAITVCCKVSELIIL
VKEIKSERHAMFLQFKEHLSESNKDCHVFFSGPL*
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spliced messenger RNA

>Gvermi3596.t1 ID=Gvermi3596.t1|Name=Gvermi3596.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=405bp|location=Sequence derived from alignment at ScGOVlb_41:3514940..3515344+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTTGTTTGGTCTACTTCTTCTCACGAGAGTGAGGTACTTGCAAT
AACGCTTCTCAACAACGCAATGCTGAACGACGGAACCCTCACGAATGTAA
AGCTGCAATTTGTGACGTCGGCCAAAGAAAGGCAACGTGAACAACTGGAA
GGCACAGCTACGGTATCTATGGATACTCATCTTCTGGCCATCGATGTCTT
CACCAGGATTGAAAACCTTTTGGAAGATAATGAATCTGTTCCGCAAGCTT
CTGACAATGCTATCACGGTTTGTTGCAAGGTCAGTGAACTTATCATACTG
GTAAAAGAAATCAAATCTGAACGTCACGCTATGTTCCTCCAATTCAAGGA
ACACCTTTCGGAATCGAATAAAGATTGCCATGTCTTCTTTTCTGGACCTC
TTTGA
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protein sequence of Gvermi3596.t1

>Gvermi3596.t1 ID=Gvermi3596.t1|Name=Gvermi3596.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=135bp
MRVVWSTSSHESEVLAITLLNNAMLNDGTLTNVKLQFVTSAKERQREQLE
GTATVSMDTHLLAIDVFTRIENLLEDNESVPQASDNAITVCCKVSELIIL
VKEIKSERHAMFLQFKEHLSESNKDCHVFFSGPL*
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mRNA from alignment at ScGOVlb_41:3514940..3515344+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3596.t1 ID=Gvermi3596.t1|Name=Gvermi3596.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=405bp|location=Sequence derived from alignment at ScGOVlb_41:3514940..3515344+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGTTGTTTGGTCTACTTCTTCTCACGAGAGTGAGGTACTTGCAAT
AACGCTTCTCAACAACGCAATGCTGAACGACGGAACCCTCACGAATGTAA
AGCTGCAATTTGTGACGTCGGCCAAAGAAAGGCAACGTGAACAACTGGAA
GGCACAGCTACGGTATCTATGGATACTCATCTTCTGGCCATCGATGTCTT
CACCAGGATTGAAAACCTTTTGGAAGATAATGAATCTGTTCCGCAAGCTT
CTGACAATGCTATCACGGTTTGTTGCAAGGTCAGTGAACTTATCATACTG
GTAAAAGAAATCAAATCTGAACGTCACGCTATGTTCCTCCAATTCAAGGA
ACACCTTTCGGAATCGAATAAAGATTGCCATGTCTTCTTTTCTGGACCTC
TTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:3514940..3515344+

>Gvermi3596.t1 ID=Gvermi3596.t1|Name=Gvermi3596.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=405bp|location=Sequence derived from alignment at ScGOVlb_41:3514940..3515344+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGTTGTTTGGTCTACTTCTTCTCACGAGAGTGAGGTACTTGCAAT
AACGCTTCTCAACAACGCAATGCTGAACGACGGAACCCTCACGAATGTAA
AGCTGCAATTTGTGACGTCGGCCAAAGAAAGGCAACGTGAACAACTGGAA
GGCACAGCTACGGTATCTATGGATACTCATCTTCTGGCCATCGATGTCTT
CACCAGGATTGAAAACCTTTTGGAAGATAATGAATCTGTTCCGCAAGCTT
CTGACAATGCTATCACGGTTTGTTGCAAGGTCAGTGAACTTATCATACTG
GTAAAAGAAATCAAATCTGAACGTCACGCTATGTTCCTCCAATTCAAGGA
ACACCTTTCGGAATCGAATAAAGATTGCCATGTCTTCTTTTCTGGACCTC
TTTGA
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