Gvermi3585.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3585.t1
Unique Name	Gvermi3585.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	565

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:3457530..3459224 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	81824.XP_001742067.1
Preferred name	BYSL
PFAMs	Bystin
Max annot lvl	33154\|Opisthokonta
KEGG ko	ko:K14797
GOs	GO:0000003,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0001701,GO:0001824,GO:0001825,GO:0001829,GO:0002237,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0005874,GO:0005881,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007155,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007565,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009790,GO:0009792,GO:0009987,GO:0010033,GO:0010467,GO:0014070,GO:0015031,GO:0015630,GO:0015833,GO:0015931,GO:0016070,GO:0016072,GO:0016973,GO:0022414,GO:0022610,GO:0022613,GO:0030154,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0030688,GO:0031503,GO:0031974,GO:0031981,GO:0032496,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033993,GO:0034097,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0042221,GO:0042254,GO:0042274,GO:0042886,GO:0042995,GO:0043009,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0045177,GO:0045184,GO:0046483,GO:0046907,GO:0048471,GO:0048513,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060322,GO:0070013,GO:0070555,GO:0070727,GO:0070848,GO:0070887,GO:0071166,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071347,GO:0071363,GO:0071396,GO:0071407,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1901360,GO:1901363,GO:1901700,GO:1901701,GO:1990904
Evalue	3e-90
EggNOG OGs	KOG3871@1\|root,KOG3871@2759\|Eukaryota,38DBE@33154\|Opisthokonta
Description	ribosome biogenesis
COG category	W
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3585	Gvermi3585	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 3457530..3459224 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3585.t1.stop1	Gvermi3585.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 3457530..3457532 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3585.t1.CDS1	Gvermi3585.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 3457530..3459224 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3585.t1.exon1	Gvermi3585.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 3457530..3459224 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3585.t1.start1	Gvermi3585.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 3459222..3459224 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3585.t1	Gvermi3585.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 3457530..3459224 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:3457530..3459224-
coding sequence from alignment at ScGOVlb_41:3457530..3459224-

mRNA sequence

>Gvermi3585.t1 ID=Gvermi3585.t1|Name=Gvermi3585.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=565bp
MGKKRARPVTSFRRAEGPKENAPLHSQSFVDEVREVRDVEFASEKRQTER
SKRRKIIAEKELSEINRKSKALAKAAKSSSGPAAKRMDAKRAGLEVWKQA
ALRRKKSLSRRATAGKDIEDANRDIGAQDSLPADAKASAKILKEAKLQRQ
EIRHENLAAVADEAAKKNAALEIQLQGVGEKEKTKMPASADSDSEAEDDT
KSYIGTEIGFDDIDADERELDFLDASKITEDEELALAYFTGVSANAGTSS
DQQPNSDPAGPRVMLADIILAKIREKEEADAEAAAIAANPEKAERDRKIA
EVYGLVGNIMSKYRSGKVPKAFKVFPKQRNWEELMYLTRPDEWSPAAVFV
ATRLLASNLPAKQVISFYRDILLPRCMEDINENKKLNYHLYRALEKSVYK
PDSFCKGILFSLCEDRSCTLRQATIIGSVVRKVSIPMLHSAATLLYLSQL
PYSPQVSLIMMALLEKKYALPYRVLDSIVDSFLRMKKDQRALPVLWHKCL
LSFAQTYKMELTVDQKEKLKVLMRAHTHYAITPEIRRELFSSRNRGDSFD
PDANTIAKKIALAT*

spliced messenger RNA

>Gvermi3585.t1 ID=Gvermi3585.t1|Name=Gvermi3585.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at ScGOVlb_41:3457530..3459224- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAAGAAGAGAGCAAGGCCCGTTACTAGCTTCCGCAGAGCAGAAGG
ACCAAAGGAAAATGCGCCGCTCCATTCGCAGAGTTTTGTCGATGAAGTTC
GCGAAGTCAGAGATGTGGAATTTGCCTCGGAAAAGCGACAAACAGAGCGT
TCGAAGAGAAGGAAGATAATAGCAGAAAAAGAATTGTCAGAAATCAACAG
GAAGTCAAAAGCGTTAGCTAAAGCTGCGAAATCGAGCTCTGGACCAGCGG
CGAAGCGAATGGATGCGAAGCGCGCTGGGCTTGAAGTATGGAAACAGGCT
GCCTTAAGGAGAAAAAAGTCTCTTTCTCGAAGGGCTACTGCTGGAAAAGA
CATTGAGGACGCGAATCGCGATATCGGCGCACAGGATTCGCTCCCCGCTG
ATGCAAAGGCGTCAGCCAAGATTTTAAAAGAGGCAAAGTTGCAGCGTCAA
GAGATCCGACATGAAAATCTTGCGGCTGTCGCAGATGAAGCGGCGAAGAA
GAACGCCGCGTTGGAGATTCAGCTTCAAGGCGTAGGTGAGAAGGAGAAAA
CAAAAATGCCTGCGTCAGCGGACAGCGATTCTGAGGCTGAAGACGACACA
AAGAGCTACATAGGTACAGAAATCGGGTTCGATGACATCGATGCGGATGA
AAGAGAGCTAGACTTCCTGGATGCAAGCAAAATCACGGAGGATGAGGAGC
TGGCTCTAGCATATTTCACTGGTGTGTCAGCAAATGCGGGAACATCCTCT
GACCAGCAGCCAAACTCTGATCCAGCCGGTCCGCGTGTAATGCTGGCAGA
CATCATTCTCGCGAAGATCAGAGAAAAAGAAGAAGCCGATGCAGAGGCCG
CTGCCATTGCTGCCAATCCGGAAAAGGCAGAAAGAGATCGAAAGATTGCT
GAAGTGTATGGCTTGGTGGGCAATATCATGTCCAAGTACAGAAGCGGAAA
GGTACCGAAGGCATTTAAAGTTTTCCCCAAGCAAAGAAACTGGGAGGAGT
TGATGTATCTCACAAGGCCTGATGAATGGTCTCCAGCGGCGGTATTTGTC
GCCACGAGGCTTTTGGCTTCCAATCTGCCCGCAAAGCAAGTGATCTCATT
CTATCGAGATATTTTGCTCCCGCGGTGCATGGAGGATATCAACGAAAACA
AGAAGCTCAACTATCACTTATACCGCGCTCTGGAAAAGTCTGTCTATAAG
CCAGACTCATTCTGCAAGGGTATCTTATTTTCCTTGTGTGAAGATCGCAG
CTGTACGTTGAGGCAAGCCACAATAATCGGGTCGGTGGTGAGAAAGGTGT
CAATTCCAATGTTACATTCCGCTGCAACGTTGTTGTATTTATCACAATTG
CCATACAGTCCACAAGTCTCTCTAATTATGATGGCGCTACTGGAGAAAAA
ATACGCACTGCCGTATAGAGTCCTCGATTCGATTGTGGACAGCTTCCTGA
GAATGAAAAAGGACCAACGCGCACTGCCAGTCCTTTGGCACAAATGCCTT
CTTTCGTTTGCCCAAACTTACAAAATGGAGCTAACCGTGGACCAAAAAGA
GAAGCTGAAGGTTTTGATGAGAGCACACACGCATTATGCCATTACGCCGG
AAATTCGGCGAGAGTTATTCTCATCGAGAAATCGTGGTGACTCATTTGAC
CCCGACGCAAACACTATTGCCAAGAAAATAGCCCTAGCAACTTAG

protein sequence of Gvermi3585.t1

>Gvermi3585.t1 ID=Gvermi3585.t1|Name=Gvermi3585.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=565bp
MGKKRARPVTSFRRAEGPKENAPLHSQSFVDEVREVRDVEFASEKRQTER
SKRRKIIAEKELSEINRKSKALAKAAKSSSGPAAKRMDAKRAGLEVWKQA
ALRRKKSLSRRATAGKDIEDANRDIGAQDSLPADAKASAKILKEAKLQRQ
EIRHENLAAVADEAAKKNAALEIQLQGVGEKEKTKMPASADSDSEAEDDT
KSYIGTEIGFDDIDADERELDFLDASKITEDEELALAYFTGVSANAGTSS
DQQPNSDPAGPRVMLADIILAKIREKEEADAEAAAIAANPEKAERDRKIA
EVYGLVGNIMSKYRSGKVPKAFKVFPKQRNWEELMYLTRPDEWSPAAVFV
ATRLLASNLPAKQVISFYRDILLPRCMEDINENKKLNYHLYRALEKSVYK
PDSFCKGILFSLCEDRSCTLRQATIIGSVVRKVSIPMLHSAATLLYLSQL
PYSPQVSLIMMALLEKKYALPYRVLDSIVDSFLRMKKDQRALPVLWHKCL
LSFAQTYKMELTVDQKEKLKVLMRAHTHYAITPEIRRELFSSRNRGDSFD
PDANTIAKKIALAT*

mRNA from alignment at ScGOVlb_41:3457530..3459224-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3585.t1 ID=Gvermi3585.t1|Name=Gvermi3585.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1695bp|location=Sequence derived from alignment at ScGOVlb_41:3457530..3459224- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAAAGAAGAGAGCAAGGCCCGTTACTAGCTTCCGCAGAGCAGAAGG
ACCAAAGGAAAATGCGCCGCTCCATTCGCAGAGTTTTGTCGATGAAGTTC
GCGAAGTCAGAGATGTGGAATTTGCCTCGGAAAAGCGACAAACAGAGCGT
TCGAAGAGAAGGAAGATAATAGCAGAAAAAGAATTGTCAGAAATCAACAG
GAAGTCAAAAGCGTTAGCTAAAGCTGCGAAATCGAGCTCTGGACCAGCGG
CGAAGCGAATGGATGCGAAGCGCGCTGGGCTTGAAGTATGGAAACAGGCT
GCCTTAAGGAGAAAAAAGTCTCTTTCTCGAAGGGCTACTGCTGGAAAAGA
CATTGAGGACGCGAATCGCGATATCGGCGCACAGGATTCGCTCCCCGCTG
ATGCAAAGGCGTCAGCCAAGATTTTAAAAGAGGCAAAGTTGCAGCGTCAA
GAGATCCGACATGAAAATCTTGCGGCTGTCGCAGATGAAGCGGCGAAGAA
GAACGCCGCGTTGGAGATTCAGCTTCAAGGCGTAGGTGAGAAGGAGAAAA
CAAAAATGCCTGCGTCAGCGGACAGCGATTCTGAGGCTGAAGACGACACA
AAGAGCTACATAGGTACAGAAATCGGGTTCGATGACATCGATGCGGATGA
AAGAGAGCTAGACTTCCTGGATGCAAGCAAAATCACGGAGGATGAGGAGC
TGGCTCTAGCATATTTCACTGGTGTGTCAGCAAATGCGGGAACATCCTCT
GACCAGCAGCCAAACTCTGATCCAGCCGGTCCGCGTGTAATGCTGGCAGA
CATCATTCTCGCGAAGATCAGAGAAAAAGAAGAAGCCGATGCAGAGGCCG
CTGCCATTGCTGCCAATCCGGAAAAGGCAGAAAGAGATCGAAAGATTGCT
GAAGTGTATGGCTTGGTGGGCAATATCATGTCCAAGTACAGAAGCGGAAA
GGTACCGAAGGCATTTAAAGTTTTCCCCAAGCAAAGAAACTGGGAGGAGT
TGATGTATCTCACAAGGCCTGATGAATGGTCTCCAGCGGCGGTATTTGTC
GCCACGAGGCTTTTGGCTTCCAATCTGCCCGCAAAGCAAGTGATCTCATT
CTATCGAGATATTTTGCTCCCGCGGTGCATGGAGGATATCAACGAAAACA
AGAAGCTCAACTATCACTTATACCGCGCTCTGGAAAAGTCTGTCTATAAG
CCAGACTCATTCTGCAAGGGTATCTTATTTTCCTTGTGTGAAGATCGCAG
CTGTACGTTGAGGCAAGCCACAATAATCGGGTCGGTGGTGAGAAAGGTGT
CAATTCCAATGTTACATTCCGCTGCAACGTTGTTGTATTTATCACAATTG
CCATACAGTCCACAAGTCTCTCTAATTATGATGGCGCTACTGGAGAAAAA
ATACGCACTGCCGTATAGAGTCCTCGATTCGATTGTGGACAGCTTCCTGA
GAATGAAAAAGGACCAACGCGCACTGCCAGTCCTTTGGCACAAATGCCTT
CTTTCGTTTGCCCAAACTTACAAAATGGAGCTAACCGTGGACCAAAAAGA
GAAGCTGAAGGTTTTGATGAGAGCACACACGCATTATGCCATTACGCCGG
AAATTCGGCGAGAGTTATTCTCATCGAGAAATCGTGGTGACTCATTTGAC
CCCGACGCAAACACTATTGCCAAGAAAATAGCCCTAGCAACTTAG

Coding sequence (CDS) from alignment at ScGOVlb_41:3457530..3459224-

>Gvermi3585.t1 ID=Gvermi3585.t1|Name=Gvermi3585.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1695bp|location=Sequence derived from alignment at ScGOVlb_41:3457530..3459224- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAAAGAAGAGAGCAAGGCCCGTTACTAGCTTCCGCAGAGCAGAAGG
ACCAAAGGAAAATGCGCCGCTCCATTCGCAGAGTTTTGTCGATGAAGTTC
GCGAAGTCAGAGATGTGGAATTTGCCTCGGAAAAGCGACAAACAGAGCGT
TCGAAGAGAAGGAAGATAATAGCAGAAAAAGAATTGTCAGAAATCAACAG
GAAGTCAAAAGCGTTAGCTAAAGCTGCGAAATCGAGCTCTGGACCAGCGG
CGAAGCGAATGGATGCGAAGCGCGCTGGGCTTGAAGTATGGAAACAGGCT
GCCTTAAGGAGAAAAAAGTCTCTTTCTCGAAGGGCTACTGCTGGAAAAGA
CATTGAGGACGCGAATCGCGATATCGGCGCACAGGATTCGCTCCCCGCTG
ATGCAAAGGCGTCAGCCAAGATTTTAAAAGAGGCAAAGTTGCAGCGTCAA
GAGATCCGACATGAAAATCTTGCGGCTGTCGCAGATGAAGCGGCGAAGAA
GAACGCCGCGTTGGAGATTCAGCTTCAAGGCGTAGGTGAGAAGGAGAAAA
CAAAAATGCCTGCGTCAGCGGACAGCGATTCTGAGGCTGAAGACGACACA
AAGAGCTACATAGGTACAGAAATCGGGTTCGATGACATCGATGCGGATGA
AAGAGAGCTAGACTTCCTGGATGCAAGCAAAATCACGGAGGATGAGGAGC
TGGCTCTAGCATATTTCACTGGTGTGTCAGCAAATGCGGGAACATCCTCT
GACCAGCAGCCAAACTCTGATCCAGCCGGTCCGCGTGTAATGCTGGCAGA
CATCATTCTCGCGAAGATCAGAGAAAAAGAAGAAGCCGATGCAGAGGCCG
CTGCCATTGCTGCCAATCCGGAAAAGGCAGAAAGAGATCGAAAGATTGCT
GAAGTGTATGGCTTGGTGGGCAATATCATGTCCAAGTACAGAAGCGGAAA
GGTACCGAAGGCATTTAAAGTTTTCCCCAAGCAAAGAAACTGGGAGGAGT
TGATGTATCTCACAAGGCCTGATGAATGGTCTCCAGCGGCGGTATTTGTC
GCCACGAGGCTTTTGGCTTCCAATCTGCCCGCAAAGCAAGTGATCTCATT
CTATCGAGATATTTTGCTCCCGCGGTGCATGGAGGATATCAACGAAAACA
AGAAGCTCAACTATCACTTATACCGCGCTCTGGAAAAGTCTGTCTATAAG
CCAGACTCATTCTGCAAGGGTATCTTATTTTCCTTGTGTGAAGATCGCAG
CTGTACGTTGAGGCAAGCCACAATAATCGGGTCGGTGGTGAGAAAGGTGT
CAATTCCAATGTTACATTCCGCTGCAACGTTGTTGTATTTATCACAATTG
CCATACAGTCCACAAGTCTCTCTAATTATGATGGCGCTACTGGAGAAAAA
ATACGCACTGCCGTATAGAGTCCTCGATTCGATTGTGGACAGCTTCCTGA
GAATGAAAAAGGACCAACGCGCACTGCCAGTCCTTTGGCACAAATGCCTT
CTTTCGTTTGCCCAAACTTACAAAATGGAGCTAACCGTGGACCAAAAAGA
GAAGCTGAAGGTTTTGATGAGAGCACACACGCATTATGCCATTACGCCGG
AAATTCGGCGAGAGTTATTCTCATCGAGAAATCGTGGTGACTCATTTGAC
CCCGACGCAAACACTATTGCCAAGAAAATAGCCCTAGCAACTTAG