Gvermi3503.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3503.t1
Unique NameGvermi3503.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length369
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:2499783..2500889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog15368.BRADI3G15000.1
PFAMsRrnaAD
Max annot lvl35493|Streptophyta
KEGG rclassRC00003,RC03257
KEGG koko:K14191
KEGG ReactionR10716
GOsGO:0000154,GO:0000179,GO:0001510,GO:0001708,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0019219,GO:0019222,GO:0022613,GO:0030154,GO:0031167,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032259,GO:0032502,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051301,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140098,GO:0140102,GO:1901360,GO:2000232,GO:2000234
Evalue5.85e-117
EggNOG OGsCOG0030@1|root,KOG0820@2759|Eukaryota,37MCF@33090|Viridiplantae,3G9XB@35493|Streptophyta,3KNKN@4447|Liliopsida,3I98X@38820|Poales
EC2.1.1.183
DescriptionBelongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family
COG categoryA
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3503Gvermi3503Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 2499783..2500889 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3503.t1.stop1Gvermi3503.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 2499783..2499785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3503.t1.CDS1Gvermi3503.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 2499783..2500889 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3503.t1.exon1Gvermi3503.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 2499783..2500889 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3503.t1.start1Gvermi3503.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 2500887..2500889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3503.t1Gvermi3503.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 2499783..2500889 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3503.t1 ID=Gvermi3503.t1|Name=Gvermi3503.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=369bp
MGRITKQRKLQKSAQGVLGHRGIEFNKTYGQHILRNPRVADAIVAKAGLK
STDTVLEVGPGTGNLSVRLLAQCKKLVAFEVDPRMIVELFKRVQGAAHES
RLNVIEGDVLKHTIPFFDVCVANTPYQISSPLVFRLLAHRPMFRAAILMF
QREFAMRLIAKPGDALYCRLSVNVQLLSRVSHLMKVARHNFRPPPKVESS
VVRIEPRNPPPEISFDEWDGMLRLCFQRKHRMLRAIFMQKKVLKLLEEKQ
KASHAMGNNSLKESNEQSILRLGHELAAGMEICDQVHANTVAVGVEMDSA
VTDDMEVDFPKKRKGGTRKDCGTEQPFKQKLENVFDETDFATLRAAQMSV
DDFKKLLTTFHTHGVYFS*
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spliced messenger RNA

>Gvermi3503.t1 ID=Gvermi3503.t1|Name=Gvermi3503.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at ScGOVlb_41:2499783..2500889- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGGATAACGAAGCAGCGTAAGCTGCAGAAGAGCGCTCAGGGCGT
GCTGGGCCACCGCGGAATCGAATTCAATAAGACCTATGGGCAGCACATCC
TGCGAAACCCCCGCGTCGCCGACGCCATCGTTGCGAAGGCCGGGCTCAAA
TCCACCGACACCGTGCTCGAGGTGGGACCGGGAACTGGAAATCTCTCCGT
CAGGCTTTTAGCGCAGTGCAAAAAACTCGTGGCCTTCGAAGTTGACCCGC
GGATGATTGTGGAGCTTTTCAAACGTGTGCAAGGCGCTGCGCATGAATCG
AGGCTCAACGTTATAGAAGGCGATGTGTTGAAGCACACCATTCCCTTTTT
CGACGTGTGTGTCGCGAACACGCCGTACCAGATATCGTCGCCGTTGGTGT
TTCGGCTTTTGGCGCACCGGCCGATGTTTCGTGCGGCTATTCTGATGTTT
CAACGTGAGTTTGCAATGCGTCTTATCGCCAAGCCTGGCGATGCTTTGTA
CTGTCGCTTATCTGTGAACGTGCAGTTATTATCCCGGGTATCGCACCTCA
TGAAGGTTGCCCGCCACAATTTCCGTCCGCCCCCTAAAGTGGAGTCATCC
GTGGTACGCATCGAGCCTCGGAACCCTCCCCCTGAAATAAGCTTTGACGA
ATGGGATGGAATGCTTCGATTGTGTTTTCAACGAAAGCATCGCATGCTGC
GTGCCATCTTCATGCAAAAGAAAGTTCTGAAACTGTTAGAGGAGAAGCAA
AAAGCATCTCATGCAATGGGCAACAACAGCCTGAAAGAAAGCAATGAACA
GAGCATCTTGCGGTTGGGGCATGAATTGGCTGCCGGCATGGAAATATGTG
ACCAAGTACATGCTAATACTGTAGCGGTAGGTGTGGAAATGGACAGTGCC
GTCACCGATGACATGGAAGTGGATTTTCCAAAGAAACGAAAAGGAGGCAC
TCGCAAAGATTGCGGAACGGAGCAACCTTTTAAACAGAAGCTTGAGAATG
TTTTTGATGAGACTGACTTTGCAACGCTTCGCGCCGCTCAAATGAGCGTT
GATGACTTCAAAAAACTCTTGACTACGTTTCATACGCACGGTGTGTATTT
TTCTTGA
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protein sequence of Gvermi3503.t1

>Gvermi3503.t1 ID=Gvermi3503.t1|Name=Gvermi3503.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=369bp
MGRITKQRKLQKSAQGVLGHRGIEFNKTYGQHILRNPRVADAIVAKAGLK
STDTVLEVGPGTGNLSVRLLAQCKKLVAFEVDPRMIVELFKRVQGAAHES
RLNVIEGDVLKHTIPFFDVCVANTPYQISSPLVFRLLAHRPMFRAAILMF
QREFAMRLIAKPGDALYCRLSVNVQLLSRVSHLMKVARHNFRPPPKVESS
VVRIEPRNPPPEISFDEWDGMLRLCFQRKHRMLRAIFMQKKVLKLLEEKQ
KASHAMGNNSLKESNEQSILRLGHELAAGMEICDQVHANTVAVGVEMDSA
VTDDMEVDFPKKRKGGTRKDCGTEQPFKQKLENVFDETDFATLRAAQMSV
DDFKKLLTTFHTHGVYFS*
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mRNA from alignment at ScGOVlb_41:2499783..2500889-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3503.t1 ID=Gvermi3503.t1|Name=Gvermi3503.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at ScGOVlb_41:2499783..2500889- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCAGGATAACGAAGCAGCGTAAGCTGCAGAAGAGCGCTCAGGGCGT
GCTGGGCCACCGCGGAATCGAATTCAATAAGACCTATGGGCAGCACATCC
TGCGAAACCCCCGCGTCGCCGACGCCATCGTTGCGAAGGCCGGGCTCAAA
TCCACCGACACCGTGCTCGAGGTGGGACCGGGAACTGGAAATCTCTCCGT
CAGGCTTTTAGCGCAGTGCAAAAAACTCGTGGCCTTCGAAGTTGACCCGC
GGATGATTGTGGAGCTTTTCAAACGTGTGCAAGGCGCTGCGCATGAATCG
AGGCTCAACGTTATAGAAGGCGATGTGTTGAAGCACACCATTCCCTTTTT
CGACGTGTGTGTCGCGAACACGCCGTACCAGATATCGTCGCCGTTGGTGT
TTCGGCTTTTGGCGCACCGGCCGATGTTTCGTGCGGCTATTCTGATGTTT
CAACGTGAGTTTGCAATGCGTCTTATCGCCAAGCCTGGCGATGCTTTGTA
CTGTCGCTTATCTGTGAACGTGCAGTTATTATCCCGGGTATCGCACCTCA
TGAAGGTTGCCCGCCACAATTTCCGTCCGCCCCCTAAAGTGGAGTCATCC
GTGGTACGCATCGAGCCTCGGAACCCTCCCCCTGAAATAAGCTTTGACGA
ATGGGATGGAATGCTTCGATTGTGTTTTCAACGAAAGCATCGCATGCTGC
GTGCCATCTTCATGCAAAAGAAAGTTCTGAAACTGTTAGAGGAGAAGCAA
AAAGCATCTCATGCAATGGGCAACAACAGCCTGAAAGAAAGCAATGAACA
GAGCATCTTGCGGTTGGGGCATGAATTGGCTGCCGGCATGGAAATATGTG
ACCAAGTACATGCTAATACTGTAGCGGTAGGTGTGGAAATGGACAGTGCC
GTCACCGATGACATGGAAGTGGATTTTCCAAAGAAACGAAAAGGAGGCAC
TCGCAAAGATTGCGGAACGGAGCAACCTTTTAAACAGAAGCTTGAGAATG
TTTTTGATGAGACTGACTTTGCAACGCTTCGCGCCGCTCAAATGAGCGTT
GATGACTTCAAAAAACTCTTGACTACGTTTCATACGCACGGTGTGTATTT
TTCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:2499783..2500889-

>Gvermi3503.t1 ID=Gvermi3503.t1|Name=Gvermi3503.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1107bp|location=Sequence derived from alignment at ScGOVlb_41:2499783..2500889- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCAGGATAACGAAGCAGCGTAAGCTGCAGAAGAGCGCTCAGGGCGT
GCTGGGCCACCGCGGAATCGAATTCAATAAGACCTATGGGCAGCACATCC
TGCGAAACCCCCGCGTCGCCGACGCCATCGTTGCGAAGGCCGGGCTCAAA
TCCACCGACACCGTGCTCGAGGTGGGACCGGGAACTGGAAATCTCTCCGT
CAGGCTTTTAGCGCAGTGCAAAAAACTCGTGGCCTTCGAAGTTGACCCGC
GGATGATTGTGGAGCTTTTCAAACGTGTGCAAGGCGCTGCGCATGAATCG
AGGCTCAACGTTATAGAAGGCGATGTGTTGAAGCACACCATTCCCTTTTT
CGACGTGTGTGTCGCGAACACGCCGTACCAGATATCGTCGCCGTTGGTGT
TTCGGCTTTTGGCGCACCGGCCGATGTTTCGTGCGGCTATTCTGATGTTT
CAACGTGAGTTTGCAATGCGTCTTATCGCCAAGCCTGGCGATGCTTTGTA
CTGTCGCTTATCTGTGAACGTGCAGTTATTATCCCGGGTATCGCACCTCA
TGAAGGTTGCCCGCCACAATTTCCGTCCGCCCCCTAAAGTGGAGTCATCC
GTGGTACGCATCGAGCCTCGGAACCCTCCCCCTGAAATAAGCTTTGACGA
ATGGGATGGAATGCTTCGATTGTGTTTTCAACGAAAGCATCGCATGCTGC
GTGCCATCTTCATGCAAAAGAAAGTTCTGAAACTGTTAGAGGAGAAGCAA
AAAGCATCTCATGCAATGGGCAACAACAGCCTGAAAGAAAGCAATGAACA
GAGCATCTTGCGGTTGGGGCATGAATTGGCTGCCGGCATGGAAATATGTG
ACCAAGTACATGCTAATACTGTAGCGGTAGGTGTGGAAATGGACAGTGCC
GTCACCGATGACATGGAAGTGGATTTTCCAAAGAAACGAAAAGGAGGCAC
TCGCAAAGATTGCGGAACGGAGCAACCTTTTAAACAGAAGCTTGAGAATG
TTTTTGATGAGACTGACTTTGCAACGCTTCGCGCCGCTCAAATGAGCGTT
GATGACTTCAAAAAACTCTTGACTACGTTTCATACGCACGGTGTGTATTT
TTCTTGA
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