Gvermi3491.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3491.t1
Unique NameGvermi3491.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length469
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:2308931..2310510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4641.GSMUA_Achr2P19430_001
PFAMsHomeobox_KN,POX
Max annot lvl35493|Streptophyta
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007275,GO:0008150,GO:0008285,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009653,GO:0009791,GO:0009838,GO:0009889,GO:0009908,GO:0010227,GO:0010228,GO:0010371,GO:0010468,GO:0010556,GO:0010565,GO:0010817,GO:0019216,GO:0019219,GO:0019222,GO:0019747,GO:0022414,GO:0031323,GO:0031326,GO:0032350,GO:0032501,GO:0032502,GO:0042127,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043455,GO:0043565,GO:0044424,GO:0044464,GO:0046885,GO:0046890,GO:0048367,GO:0048437,GO:0048519,GO:0048523,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0048859,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0061458,GO:0062012,GO:0065007,GO:0065008,GO:0080090,GO:0090470,GO:0090567,GO:0090691,GO:0097159,GO:0099402,GO:0140110,GO:1901363,GO:1903506,GO:2000112,GO:2001141
Evalue4.54e-10
EggNOG OGsKOG0773@1|root,KOG0773@2759|Eukaryota,37SAT@33090|Viridiplantae,3G730@35493|Streptophyta,3KQFY@4447|Liliopsida
DescriptionAssociated with HOX
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3491Gvermi3491Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 2308931..2310510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3491.t1Gvermi3491.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 2308931..2310510 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3491.t1.stop1Gvermi3491.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 2308931..2308933 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3491.t1.CDS1Gvermi3491.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 2308931..2309979 -
Gvermi3491.t1.CDS2Gvermi3491.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 2310061..2310414 -
Gvermi3491.t1.CDS3Gvermi3491.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 2310507..2310510 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3491.t1.exon1Gvermi3491.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 2308931..2309979 -
Gvermi3491.t1.exon2Gvermi3491.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 2310061..2310414 -
Gvermi3491.t1.exon3Gvermi3491.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 2310507..2310510 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3491.t1.intron1Gvermi3491.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 2309980..2310060 -
Gvermi3491.t1.intron2Gvermi3491.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 2310415..2310506 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3491.t1.start1Gvermi3491.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 2310508..2310510 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3491.t1 ID=Gvermi3491.t1|Name=Gvermi3491.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=469bp
LRPEAMSPDRVKMCENRISGFSCPLNDRYAISTANQNGRPVKNVSNRERL
GSPLFSLPLDKAHQDARQGDEIYTGGCKCHRKRRSVSNYDGSESQDSHVM
SNFRDHVRSVRAKATTTRRNEPHRLITEKSNEQNSKGTLGSPSVSFGRCS
RHLKKPGTCIGFVEGVHPGCNNVEAQKKSLSVEEGNCTREYTYLKIPPEL
QRHILLLEEHMTHPKGLLEPHHECPITLIQYETVSPRLYPGWPWIFSEGG
LFELGYPNHDKDVHEYFYDNQEGLPATSAEILKAELLRHLRNIRNGFLAS
VMEMQLMLIRQSQFRGVSESEITENINFVVQSFKTARERTFEKFRVYIRT
RRWIENSSTRGGKGFTNEQNHTLRLWFFSNFHNPYPKSEDKKKLLYDTKL
NIGQINNWLINARSRVWKPTIDCICTERKKRKIKPCGSPNYDGKRRRINL
DSLHAAPSQSNSIGQKRG*
back to top

spliced messenger RNA

>Gvermi3491.t1 ID=Gvermi3491.t1|Name=Gvermi3491.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1407bp|location=Sequence derived from alignment at ScGOVlb_41:2308931..2310510- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGAGACCGGAAGCCATGTCGCCTGATCGTGTGAAAATGTGCGAAAATAG
AATTTCAGGCTTCTCATGTCCTCTCAATGACAGATATGCGATCTCAACAG
CTAACCAAAACGGAAGGCCTGTCAAGAATGTGTCAAATAGAGAACGACTC
GGTAGCCCTTTGTTTTCTCTTCCTCTTGATAAAGCGCATCAAGATGCACG
CCAGGGTGATGAGATTTACACTGGGGGCTGCAAATGTCATCGTAAGAGAC
GTTCTGTTTCGAATTATGATGGATCAGAATCTCAGGATTCCCACGTCATG
TCTAATTTCCGAGATCATGTGAGAAGTGTAAGAGCCAAGGCCACAACAAC
GAGAAGAAATGAACCTCATCGTCTCATAACTGAGAAATCGAATGAGCAGA
ATAGCAAAGGAACACTTGGAAGTCCTTCAGTAAGTTTTGGAAGATGTTCG
AGGCATTTGAAGAAGCCAGGAACCTGCATTGGATTTGTAGAGGGGGTGCA
CCCAGGGTGTAACAATGTCGAAGCCCAGAAAAAAAGTCTTTCTGTGGAGG
AGGGAAATTGCACTCGAGAATATACATATCTGAAGATTCCGCCAGAACTT
CAACGTCACATTCTGCTTCTCGAAGAGCATATGACACACCCAAAGGGTCT
TCTTGAACCTCATCATGAATGCCCAATAACCCTTATTCAGTATGAAACTG
TGAGCCCTCGACTTTATCCTGGATGGCCTTGGATTTTCAGTGAAGGTGGC
CTGTTTGAACTAGGATACCCCAATCATGATAAGGATGTTCATGAATACTT
CTATGATAACCAGGAAGGGCTACCAGCCACGAGTGCTGAAATATTGAAGG
CTGAGTTGCTTAGACATCTTCGTAATATACGAAACGGATTTCTAGCGAGC
GTTATGGAAATGCAGTTGATGCTCATCAGACAATCACAGTTTCGAGGTGT
CTCAGAAAGTGAAATAACGGAAAACATCAACTTCGTTGTTCAGAGTTTTA
AAACTGCGAGAGAGCGAACATTCGAAAAATTTCGAGTGTATATCCGAACC
CGACGTTGGATTGAAAATAGCTCTACTCGCGGGGGTAAAGGATTTACCAA
TGAACAGAATCACACTCTCCGCCTATGGTTCTTCTCAAACTTTCACAACC
CTTATCCCAAATCAGAAGACAAGAAGAAGCTCCTATACGATACGAAGTTA
AACATTGGTCAAATCAATAACTGGTTAATTAATGCGAGAAGTCGTGTATG
GAAGCCTACGATAGACTGCATTTGTACAGAACGCAAAAAGAGAAAGATAA
AGCCGTGTGGTTCTCCGAACTACGATGGAAAACGCCGACGAATCAATCTG
GACAGCCTACATGCAGCACCAAGCCAGTCAAACAGTATTGGTCAAAAAAG
GGGATGA
back to top

protein sequence of Gvermi3491.t1

>Gvermi3491.t1 ID=Gvermi3491.t1|Name=Gvermi3491.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=469bp
LRPEAMSPDRVKMCENRISGFSCPLNDRYAISTANQNGRPVKNVSNRERL
GSPLFSLPLDKAHQDARQGDEIYTGGCKCHRKRRSVSNYDGSESQDSHVM
SNFRDHVRSVRAKATTTRRNEPHRLITEKSNEQNSKGTLGSPSVSFGRCS
RHLKKPGTCIGFVEGVHPGCNNVEAQKKSLSVEEGNCTREYTYLKIPPEL
QRHILLLEEHMTHPKGLLEPHHECPITLIQYETVSPRLYPGWPWIFSEGG
LFELGYPNHDKDVHEYFYDNQEGLPATSAEILKAELLRHLRNIRNGFLAS
VMEMQLMLIRQSQFRGVSESEITENINFVVQSFKTARERTFEKFRVYIRT
RRWIENSSTRGGKGFTNEQNHTLRLWFFSNFHNPYPKSEDKKKLLYDTKL
NIGQINNWLINARSRVWKPTIDCICTERKKRKIKPCGSPNYDGKRRRINL
DSLHAAPSQSNSIGQKRG*
back to top

mRNA from alignment at ScGOVlb_41:2308931..2310510-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3491.t1 ID=Gvermi3491.t1|Name=Gvermi3491.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1580bp|location=Sequence derived from alignment at ScGOVlb_41:2308931..2310510- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGAGTACGTGTTTGGTCAATCGAGCTCACGGAGAACAGTCCTCACAAAC
TCATGGATGTTTGAGATATCTGACAAAAAGCCACGGGGCGTTCAAGGACC
GGAAGCCATGTCGCCTGATCGTGTGAAAATGTGCGAAAATAGAATTTCAG
GCTTCTCATGTCCTCTCAATGACAGATATGCGATCTCAACAGCTAACCAA
AACGGAAGGCCTGTCAAGAATGTGTCAAATAGAGAACGACTCGGTAGCCC
TTTGTTTTCTCTTCCTCTTGATAAAGCGCATCAAGATGCACGCCAGGGTG
ATGAGATTTACACTGGGGGCTGCAAATGTCATCGTAAGAGACGTTCTGTT
TCGAATTATGATGGATCAGAATCTCAGGATTCCCACGTCATGTCTAATTT
CCGAGATCATGTGAGAAGTGTAAGAGCCAAGGCCACAACAACGAGAAGAA
GTGCGATAGGGTTTCTGCCAAAAACTTGCAGCGCTTTGCGGTCGAATACG
GAACGTTTATTTCTCAAAAGGCTTTGTTCAGATGAACCTCATCGTCTCAT
AACTGAGAAATCGAATGAGCAGAATAGCAAAGGAACACTTGGAAGTCCTT
CAGTAAGTTTTGGAAGATGTTCGAGGCATTTGAAGAAGCCAGGAACCTGC
ATTGGATTTGTAGAGGGGGTGCACCCAGGGTGTAACAATGTCGAAGCCCA
GAAAAAAAGTCTTTCTGTGGAGGAGGGAAATTGCACTCGAGAATATACAT
ATCTGAAGATTCCGCCAGAACTTCAACGTCACATTCTGCTTCTCGAAGAG
CATATGACACACCCAAAGGGTCTTCTTGAACCTCATCATGAATGCCCAAT
AACCCTTATTCAGTATGAAACTGTGAGCCCTCGACTTTATCCTGGATGGC
CTTGGATTTTCAGTGAAGGTGGCCTGTTTGAACTAGGATACCCCAATCAT
GATAAGGATGTTCATGAATACTTCTATGATAACCAGGAAGGGCTACCAGC
CACGAGTGCTGAAATATTGAAGGCTGAGTTGCTTAGACATCTTCGTAATA
TACGAAACGGATTTCTAGCGAGCGTTATGGAAATGCAGTTGATGCTCATC
AGACAATCACAGTTTCGAGGTGTCTCAGAAAGTGAAATAACGGAAAACAT
CAACTTCGTTGTTCAGAGTTTTAAAACTGCGAGAGAGCGAACATTCGAAA
AATTTCGAGTGTATATCCGAACCCGACGTTGGATTGAAAATAGCTCTACT
CGCGGGGGTAAAGGATTTACCAATGAACAGAATCACACTCTCCGCCTATG
GTTCTTCTCAAACTTTCACAACCCTTATCCCAAATCAGAAGACAAGAAGA
AGCTCCTATACGATACGAAGTTAAACATTGGTCAAATCAATAACTGGTTA
ATTAATGCGAGAAGTCGTGTATGGAAGCCTACGATAGACTGCATTTGTAC
AGAACGCAAAAAGAGAAAGATAAAGCCGTGTGGTTCTCCGAACTACGATG
GAAAACGCCGACGAATCAATCTGGACAGCCTACATGCAGCACCAAGCCAG
TCAAACAGTATTGGTCAAAAAAGGGGATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_41:2308931..2310510-

>Gvermi3491.t1 ID=Gvermi3491.t1|Name=Gvermi3491.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1407bp|location=Sequence derived from alignment at ScGOVlb_41:2308931..2310510- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGAGACCGGAAGCCATGTCGCCTGATCGTGTGAAAATGTGCGAAAATAG
AATTTCAGGCTTCTCATGTCCTCTCAATGACAGATATGCGATCTCAACAG
CTAACCAAAACGGAAGGCCTGTCAAGAATGTGTCAAATAGAGAACGACTC
GGTAGCCCTTTGTTTTCTCTTCCTCTTGATAAAGCGCATCAAGATGCACG
CCAGGGTGATGAGATTTACACTGGGGGCTGCAAATGTCATCGTAAGAGAC
GTTCTGTTTCGAATTATGATGGATCAGAATCTCAGGATTCCCACGTCATG
TCTAATTTCCGAGATCATGTGAGAAGTGTAAGAGCCAAGGCCACAACAAC
GAGAAGAAATGAACCTCATCGTCTCATAACTGAGAAATCGAATGAGCAGA
ATAGCAAAGGAACACTTGGAAGTCCTTCAGTAAGTTTTGGAAGATGTTCG
AGGCATTTGAAGAAGCCAGGAACCTGCATTGGATTTGTAGAGGGGGTGCA
CCCAGGGTGTAACAATGTCGAAGCCCAGAAAAAAAGTCTTTCTGTGGAGG
AGGGAAATTGCACTCGAGAATATACATATCTGAAGATTCCGCCAGAACTT
CAACGTCACATTCTGCTTCTCGAAGAGCATATGACACACCCAAAGGGTCT
TCTTGAACCTCATCATGAATGCCCAATAACCCTTATTCAGTATGAAACTG
TGAGCCCTCGACTTTATCCTGGATGGCCTTGGATTTTCAGTGAAGGTGGC
CTGTTTGAACTAGGATACCCCAATCATGATAAGGATGTTCATGAATACTT
CTATGATAACCAGGAAGGGCTACCAGCCACGAGTGCTGAAATATTGAAGG
CTGAGTTGCTTAGACATCTTCGTAATATACGAAACGGATTTCTAGCGAGC
GTTATGGAAATGCAGTTGATGCTCATCAGACAATCACAGTTTCGAGGTGT
CTCAGAAAGTGAAATAACGGAAAACATCAACTTCGTTGTTCAGAGTTTTA
AAACTGCGAGAGAGCGAACATTCGAAAAATTTCGAGTGTATATCCGAACC
CGACGTTGGATTGAAAATAGCTCTACTCGCGGGGGTAAAGGATTTACCAA
TGAACAGAATCACACTCTCCGCCTATGGTTCTTCTCAAACTTTCACAACC
CTTATCCCAAATCAGAAGACAAGAAGAAGCTCCTATACGATACGAAGTTA
AACATTGGTCAAATCAATAACTGGTTAATTAATGCGAGAAGTCGTGTATG
GAAGCCTACGATAGACTGCATTTGTACAGAACGCAAAAAGAGAAAGATAA
AGCCGTGTGGTTCTCCGAACTACGATGGAAAACGCCGACGAATCAATCTG
GACAGCCTACATGCAGCACCAAGCCAGTCAAACAGTATTGGTCAAAAAAG
GGGATGA
back to top