Gvermi3469.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3469.t1
Unique NameGvermi3469.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length497
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:1954966..1956456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3469Gvermi3469Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 1954966..1956456 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3469.t1.stop1Gvermi3469.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 1954966..1954968 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3469.t1.CDS1Gvermi3469.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1954966..1956456 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3469.t1.exon1Gvermi3469.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1954966..1956456 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3469.t1.start1Gvermi3469.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 1956454..1956456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3469.t1Gvermi3469.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 1954966..1956456 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3469.t1 ID=Gvermi3469.t1|Name=Gvermi3469.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=497bp
MAYANKGAASAMSRWCSHCRPITYSNNLCSALGVHHLLHFGAGIERSSDD
LLEFAETQQGMPYFALLSLWLMLNVLIRAPYMVFLLVMLLVNEAWRIAEQ
TLYISVYICSFGLFNFTRMNSFYATFMRLVESMFGKVWHDSEIRLVTSKQ
ECTLCKSGGCKNGLCYRFERGWLFDQLHISCECFKRHVSNRMALSTEQDD
CKTCFEQSDRITQGKYFGRSSSLDNFAQDGCGVFDDKVIERYYDMERSMW
VSVTLKTDDLRESKLPEIEFGRNDLDEVFTIPIPSPAPLFQMPELRYNFL
KSRGRVEASEDIVYTPIVLMKRSLSLVVAVMAVRTASRTFHEEKTLAIIT
TVTLVAAYFINMMRDRISLSELGGVHSRVSRMLAIDALSSASNLIRYNNA
DASWSRHIGYGGHIVGKINVLENILHNRAIVMGNKIVGLSREGTSIYIAD
VVHGTSDVHNSLGSRTLKAVKWRKGDHSEVIEATKHEVAPLSHFVA*
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spliced messenger RNA

>Gvermi3469.t1 ID=Gvermi3469.t1|Name=Gvermi3469.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at ScGOVlb_41:1954966..1956456- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTACGCGAACAAGGGAGCTGCCTCAGCCATGTCGCGATGGTGCTC
CCATTGCCGTCCAATCACGTACTCTAACAACCTTTGCTCCGCGCTTGGTG
TGCATCACCTGTTGCATTTCGGCGCGGGCATCGAACGAAGCTCCGATGAT
CTGCTCGAGTTTGCTGAAACCCAGCAAGGTATGCCCTACTTCGCCCTGCT
GTCATTGTGGCTCATGTTGAACGTGCTAATACGCGCTCCATACATGGTCT
TTCTGTTGGTGATGTTGCTAGTCAACGAGGCGTGGCGCATTGCCGAACAA
ACACTGTACATCTCCGTTTACATTTGTTCGTTCGGGCTGTTCAACTTCAC
TCGAATGAATTCGTTTTACGCTACATTCATGCGATTAGTGGAGTCAATGT
TTGGCAAGGTTTGGCACGATAGTGAGATCCGTCTCGTCACTTCCAAACAA
GAATGTACGCTGTGCAAGTCTGGCGGATGTAAAAACGGATTGTGTTACCG
GTTCGAACGAGGGTGGTTATTCGATCAGTTGCACATTTCATGTGAATGCT
TTAAGAGACATGTATCGAATCGAATGGCTCTAAGTACTGAGCAAGACGAC
TGCAAGACCTGCTTTGAGCAGTCTGATCGCATCACGCAGGGCAAATACTT
CGGACGAAGTTCCTCGCTCGATAACTTCGCACAAGATGGATGTGGTGTCT
TTGATGACAAAGTCATAGAACGGTATTATGACATGGAACGGTCAATGTGG
GTATCGGTTACTCTCAAAACGGACGATCTGCGTGAGTCCAAGCTTCCTGA
GATCGAATTCGGAAGGAATGATTTGGATGAGGTTTTTACAATACCAATTC
CGTCCCCGGCCCCACTGTTCCAGATGCCTGAGCTACGATATAACTTTTTG
AAGAGCAGGGGAAGAGTTGAAGCATCCGAAGATATTGTATATACACCCAT
TGTTTTGATGAAGAGATCGCTTTCTCTTGTTGTCGCTGTTATGGCGGTTA
GAACAGCTTCCAGGACATTTCATGAAGAAAAGACTCTGGCTATTATAACC
ACGGTGACGCTTGTTGCTGCGTACTTCATCAACATGATGAGGGATAGGAT
TTCTCTATCGGAACTGGGAGGCGTGCACAGTCGTGTGTCTCGAATGCTTG
CTATCGATGCCTTGTCTTCTGCATCAAATCTCATAAGATATAACAATGCC
GATGCCAGTTGGAGCAGGCATATCGGGTACGGAGGGCACATAGTGGGTAA
GATTAATGTACTGGAAAATATTCTACACAACCGCGCGATTGTGATGGGGA
ACAAGATTGTTGGCTTGTCACGAGAAGGCACCAGTATCTACATCGCCGAT
GTAGTTCACGGCACCTCAGATGTTCACAACTCTCTGGGCAGTCGAACACT
GAAAGCAGTGAAATGGCGCAAGGGTGATCATTCTGAGGTGATTGAAGCTA
CAAAACATGAAGTGGCTCCATTATCTCATTTTGTGGCATAG
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protein sequence of Gvermi3469.t1

>Gvermi3469.t1 ID=Gvermi3469.t1|Name=Gvermi3469.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=497bp
MAYANKGAASAMSRWCSHCRPITYSNNLCSALGVHHLLHFGAGIERSSDD
LLEFAETQQGMPYFALLSLWLMLNVLIRAPYMVFLLVMLLVNEAWRIAEQ
TLYISVYICSFGLFNFTRMNSFYATFMRLVESMFGKVWHDSEIRLVTSKQ
ECTLCKSGGCKNGLCYRFERGWLFDQLHISCECFKRHVSNRMALSTEQDD
CKTCFEQSDRITQGKYFGRSSSLDNFAQDGCGVFDDKVIERYYDMERSMW
VSVTLKTDDLRESKLPEIEFGRNDLDEVFTIPIPSPAPLFQMPELRYNFL
KSRGRVEASEDIVYTPIVLMKRSLSLVVAVMAVRTASRTFHEEKTLAIIT
TVTLVAAYFINMMRDRISLSELGGVHSRVSRMLAIDALSSASNLIRYNNA
DASWSRHIGYGGHIVGKINVLENILHNRAIVMGNKIVGLSREGTSIYIAD
VVHGTSDVHNSLGSRTLKAVKWRKGDHSEVIEATKHEVAPLSHFVA*
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mRNA from alignment at ScGOVlb_41:1954966..1956456-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3469.t1 ID=Gvermi3469.t1|Name=Gvermi3469.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at ScGOVlb_41:1954966..1956456- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTACGCGAACAAGGGAGCTGCCTCAGCCATGTCGCGATGGTGCTC
CCATTGCCGTCCAATCACGTACTCTAACAACCTTTGCTCCGCGCTTGGTG
TGCATCACCTGTTGCATTTCGGCGCGGGCATCGAACGAAGCTCCGATGAT
CTGCTCGAGTTTGCTGAAACCCAGCAAGGTATGCCCTACTTCGCCCTGCT
GTCATTGTGGCTCATGTTGAACGTGCTAATACGCGCTCCATACATGGTCT
TTCTGTTGGTGATGTTGCTAGTCAACGAGGCGTGGCGCATTGCCGAACAA
ACACTGTACATCTCCGTTTACATTTGTTCGTTCGGGCTGTTCAACTTCAC
TCGAATGAATTCGTTTTACGCTACATTCATGCGATTAGTGGAGTCAATGT
TTGGCAAGGTTTGGCACGATAGTGAGATCCGTCTCGTCACTTCCAAACAA
GAATGTACGCTGTGCAAGTCTGGCGGATGTAAAAACGGATTGTGTTACCG
GTTCGAACGAGGGTGGTTATTCGATCAGTTGCACATTTCATGTGAATGCT
TTAAGAGACATGTATCGAATCGAATGGCTCTAAGTACTGAGCAAGACGAC
TGCAAGACCTGCTTTGAGCAGTCTGATCGCATCACGCAGGGCAAATACTT
CGGACGAAGTTCCTCGCTCGATAACTTCGCACAAGATGGATGTGGTGTCT
TTGATGACAAAGTCATAGAACGGTATTATGACATGGAACGGTCAATGTGG
GTATCGGTTACTCTCAAAACGGACGATCTGCGTGAGTCCAAGCTTCCTGA
GATCGAATTCGGAAGGAATGATTTGGATGAGGTTTTTACAATACCAATTC
CGTCCCCGGCCCCACTGTTCCAGATGCCTGAGCTACGATATAACTTTTTG
AAGAGCAGGGGAAGAGTTGAAGCATCCGAAGATATTGTATATACACCCAT
TGTTTTGATGAAGAGATCGCTTTCTCTTGTTGTCGCTGTTATGGCGGTTA
GAACAGCTTCCAGGACATTTCATGAAGAAAAGACTCTGGCTATTATAACC
ACGGTGACGCTTGTTGCTGCGTACTTCATCAACATGATGAGGGATAGGAT
TTCTCTATCGGAACTGGGAGGCGTGCACAGTCGTGTGTCTCGAATGCTTG
CTATCGATGCCTTGTCTTCTGCATCAAATCTCATAAGATATAACAATGCC
GATGCCAGTTGGAGCAGGCATATCGGGTACGGAGGGCACATAGTGGGTAA
GATTAATGTACTGGAAAATATTCTACACAACCGCGCGATTGTGATGGGGA
ACAAGATTGTTGGCTTGTCACGAGAAGGCACCAGTATCTACATCGCCGAT
GTAGTTCACGGCACCTCAGATGTTCACAACTCTCTGGGCAGTCGAACACT
GAAAGCAGTGAAATGGCGCAAGGGTGATCATTCTGAGGTGATTGAAGCTA
CAAAACATGAAGTGGCTCCATTATCTCATTTTGTGGCATAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:1954966..1956456-

>Gvermi3469.t1 ID=Gvermi3469.t1|Name=Gvermi3469.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1491bp|location=Sequence derived from alignment at ScGOVlb_41:1954966..1956456- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTACGCGAACAAGGGAGCTGCCTCAGCCATGTCGCGATGGTGCTC
CCATTGCCGTCCAATCACGTACTCTAACAACCTTTGCTCCGCGCTTGGTG
TGCATCACCTGTTGCATTTCGGCGCGGGCATCGAACGAAGCTCCGATGAT
CTGCTCGAGTTTGCTGAAACCCAGCAAGGTATGCCCTACTTCGCCCTGCT
GTCATTGTGGCTCATGTTGAACGTGCTAATACGCGCTCCATACATGGTCT
TTCTGTTGGTGATGTTGCTAGTCAACGAGGCGTGGCGCATTGCCGAACAA
ACACTGTACATCTCCGTTTACATTTGTTCGTTCGGGCTGTTCAACTTCAC
TCGAATGAATTCGTTTTACGCTACATTCATGCGATTAGTGGAGTCAATGT
TTGGCAAGGTTTGGCACGATAGTGAGATCCGTCTCGTCACTTCCAAACAA
GAATGTACGCTGTGCAAGTCTGGCGGATGTAAAAACGGATTGTGTTACCG
GTTCGAACGAGGGTGGTTATTCGATCAGTTGCACATTTCATGTGAATGCT
TTAAGAGACATGTATCGAATCGAATGGCTCTAAGTACTGAGCAAGACGAC
TGCAAGACCTGCTTTGAGCAGTCTGATCGCATCACGCAGGGCAAATACTT
CGGACGAAGTTCCTCGCTCGATAACTTCGCACAAGATGGATGTGGTGTCT
TTGATGACAAAGTCATAGAACGGTATTATGACATGGAACGGTCAATGTGG
GTATCGGTTACTCTCAAAACGGACGATCTGCGTGAGTCCAAGCTTCCTGA
GATCGAATTCGGAAGGAATGATTTGGATGAGGTTTTTACAATACCAATTC
CGTCCCCGGCCCCACTGTTCCAGATGCCTGAGCTACGATATAACTTTTTG
AAGAGCAGGGGAAGAGTTGAAGCATCCGAAGATATTGTATATACACCCAT
TGTTTTGATGAAGAGATCGCTTTCTCTTGTTGTCGCTGTTATGGCGGTTA
GAACAGCTTCCAGGACATTTCATGAAGAAAAGACTCTGGCTATTATAACC
ACGGTGACGCTTGTTGCTGCGTACTTCATCAACATGATGAGGGATAGGAT
TTCTCTATCGGAACTGGGAGGCGTGCACAGTCGTGTGTCTCGAATGCTTG
CTATCGATGCCTTGTCTTCTGCATCAAATCTCATAAGATATAACAATGCC
GATGCCAGTTGGAGCAGGCATATCGGGTACGGAGGGCACATAGTGGGTAA
GATTAATGTACTGGAAAATATTCTACACAACCGCGCGATTGTGATGGGGA
ACAAGATTGTTGGCTTGTCACGAGAAGGCACCAGTATCTACATCGCCGAT
GTAGTTCACGGCACCTCAGATGTTCACAACTCTCTGGGCAGTCGAACACT
GAAAGCAGTGAAATGGCGCAAGGGTGATCATTCTGAGGTGATTGAAGCTA
CAAAACATGAAGTGGCTCCATTATCTCATTTTGTGGCATAG
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