Gvermi3467.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3467.t1
Unique NameGvermi3467.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length650
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:1913252..1915201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3467Gvermi3467Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 1913252..1915201 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3467.t1.stop1Gvermi3467.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 1913252..1913254 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3467.t1.CDS1Gvermi3467.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1913252..1915201 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3467.t1.exon1Gvermi3467.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1913252..1915201 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3467.t1.start1Gvermi3467.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 1915199..1915201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3467.t1Gvermi3467.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 1913252..1915201 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3467.t1 ID=Gvermi3467.t1|Name=Gvermi3467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=650bp
MPCLPQLDHASLSTLHRQVTAIDEQPGLGWQTILSFTSVLFAGMQGTLAM
ESADPCRMSFEKVSLLLILEALEAGVVLAAEIYSFVELRAVLQNRLQWLY
WLPYCLLMYGVISLLMDVGFTLYLANRSRVRWIPFSNIHEYRNVCTSLVT
VFHLVITTCLSIILVGWRQRWWMKASPGVSSQEALEATRTESFLSVGAMC
FSSVWALALLMISLVLCCTHRDKIHRFLAVLKIVKTKLKSSRSNDDPHVA
TQEVTVCIDNQDANYKENPDGPEKRLGEVCTRRQRKRSVRNPVAFIVRIL
CPNKYEPQYRREETKSMKLIKDRCRLLLLLKNQINIQKEKRGNEKTYFKV
ILEETCPKAHISDEQGKTQETVEEIITHENIEQIKVLESVEQSKSHESVE
QSQTHESVEKIIPFEIVDQMKTRSDGTIETTTGDTDSEPNELLEEKEVLT
LCDAERLENGLKEYARAFKGTKVTSGDNPSSLVRVRRGDDGAENANSSQH
NDSVFANRQMCIGLIETCADLDDVVEIYCKECPLHVGNAILPDCNHDDSE
EQIHGNGNSAALHVVFLIATHISIFPLLFCVVCGVWRLWDRVDSETFRAL
KELADIVIVISIVEIALNLKHILWGRGSSKKADIPDFERVAIDAQNQSR*
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spliced messenger RNA

>Gvermi3467.t1 ID=Gvermi3467.t1|Name=Gvermi3467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1950bp|location=Sequence derived from alignment at ScGOVlb_41:1913252..1915201- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTGTCTTCCCCAACTTGACCATGCGTCACTCTCTACCCTCCATCG
CCAGGTAACTGCAATTGACGAGCAACCAGGGCTGGGCTGGCAGACTATCC
TGTCATTCACATCTGTTCTTTTCGCCGGCATGCAAGGAACGCTAGCGATG
GAATCTGCAGACCCATGTCGAATGTCATTCGAAAAGGTAAGCCTTCTTCT
TATTTTGGAAGCCCTTGAGGCGGGTGTCGTACTTGCCGCCGAGATTTATT
CTTTTGTCGAGCTTCGAGCTGTTCTACAGAATCGACTTCAATGGCTGTAC
TGGTTGCCGTACTGCCTTTTGATGTACGGAGTCATCAGCCTTCTAATGGA
CGTCGGTTTCACCCTGTACCTGGCAAATCGTTCTCGGGTGCGGTGGATCC
CTTTTTCCAACATCCATGAATATCGCAATGTCTGCACCTCACTTGTTACA
GTATTCCATCTTGTAATTACAACATGCCTCTCCATTATTCTTGTGGGATG
GCGACAGAGATGGTGGATGAAGGCGTCTCCTGGTGTATCGAGTCAGGAAG
CTCTGGAAGCTACGAGAACAGAATCGTTCCTCAGCGTTGGGGCAATGTGT
TTTTCATCTGTCTGGGCCCTTGCGCTCCTCATGATTTCCCTGGTGTTATG
CTGTACGCACAGGGATAAAATTCACAGATTTCTTGCTGTACTAAAAATCG
TGAAGACGAAGTTGAAATCTAGTCGTAGCAATGATGATCCACATGTTGCA
ACACAAGAAGTTACAGTCTGCATTGACAATCAAGACGCTAACTACAAGGA
AAATCCTGATGGACCTGAGAAAAGACTTGGTGAGGTGTGCACTCGAAGAC
AACGAAAAAGAAGTGTTCGAAATCCTGTAGCCTTCATTGTCAGGATTCTG
TGTCCCAACAAGTACGAGCCTCAATATCGGAGAGAAGAAACCAAATCGAT
GAAACTCATAAAGGACCGCTGCCGGCTATTGTTGCTTCTCAAGAACCAGA
TCAACATCCAGAAGGAAAAGAGAGGAAATGAGAAAACCTATTTTAAAGTG
ATTCTTGAAGAGACGTGTCCAAAAGCTCATATTAGTGATGAACAAGGCAA
AACACAGGAAACGGTTGAAGAAATCATAACGCATGAAAATATTGAGCAAA
TCAAAGTACTTGAAAGTGTTGAGCAAAGCAAATCGCATGAAAGTGTTGAG
CAAAGCCAAACACATGAAAGTGTTGAAAAAATCATACCGTTTGAAATTGT
TGACCAAATGAAAACACGAAGTGATGGGACCATCGAAACAACCACTGGTG
ATACCGATTCTGAGCCGAATGAATTGCTCGAAGAAAAAGAAGTCTTGACC
CTCTGCGACGCAGAAAGACTGGAAAATGGTTTAAAAGAGTATGCAAGGGC
TTTCAAAGGAACCAAAGTCACTTCAGGAGACAATCCGTCAAGTTTGGTGC
GCGTACGGAGAGGGGATGATGGTGCAGAAAATGCAAATTCGTCTCAACAT
AATGATTCTGTATTTGCGAACCGTCAAATGTGTATAGGTCTCATCGAGAC
CTGTGCGGATTTGGACGACGTTGTTGAAATTTACTGCAAAGAGTGTCCTC
TTCACGTTGGAAATGCGATTTTACCGGATTGTAATCATGACGATAGCGAA
GAACAAATCCATGGAAACGGAAACTCAGCCGCTCTTCACGTTGTATTTCT
CATTGCAACCCATATTTCTATTTTTCCTCTATTATTCTGTGTGGTGTGCG
GGGTCTGGCGATTATGGGACAGAGTGGACTCCGAAACATTCCGGGCTCTC
AAAGAACTTGCTGACATTGTCATCGTGATATCTATTGTTGAAATAGCTTT
GAATTTGAAACATATTCTATGGGGTCGTGGTTCTTCCAAAAAGGCCGACA
TTCCGGATTTTGAGCGCGTTGCAATTGATGCTCAAAACCAGTCAAGATAG
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protein sequence of Gvermi3467.t1

>Gvermi3467.t1 ID=Gvermi3467.t1|Name=Gvermi3467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=650bp
MPCLPQLDHASLSTLHRQVTAIDEQPGLGWQTILSFTSVLFAGMQGTLAM
ESADPCRMSFEKVSLLLILEALEAGVVLAAEIYSFVELRAVLQNRLQWLY
WLPYCLLMYGVISLLMDVGFTLYLANRSRVRWIPFSNIHEYRNVCTSLVT
VFHLVITTCLSIILVGWRQRWWMKASPGVSSQEALEATRTESFLSVGAMC
FSSVWALALLMISLVLCCTHRDKIHRFLAVLKIVKTKLKSSRSNDDPHVA
TQEVTVCIDNQDANYKENPDGPEKRLGEVCTRRQRKRSVRNPVAFIVRIL
CPNKYEPQYRREETKSMKLIKDRCRLLLLLKNQINIQKEKRGNEKTYFKV
ILEETCPKAHISDEQGKTQETVEEIITHENIEQIKVLESVEQSKSHESVE
QSQTHESVEKIIPFEIVDQMKTRSDGTIETTTGDTDSEPNELLEEKEVLT
LCDAERLENGLKEYARAFKGTKVTSGDNPSSLVRVRRGDDGAENANSSQH
NDSVFANRQMCIGLIETCADLDDVVEIYCKECPLHVGNAILPDCNHDDSE
EQIHGNGNSAALHVVFLIATHISIFPLLFCVVCGVWRLWDRVDSETFRAL
KELADIVIVISIVEIALNLKHILWGRGSSKKADIPDFERVAIDAQNQSR*
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mRNA from alignment at ScGOVlb_41:1913252..1915201-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3467.t1 ID=Gvermi3467.t1|Name=Gvermi3467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1950bp|location=Sequence derived from alignment at ScGOVlb_41:1913252..1915201- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTGTCTTCCCCAACTTGACCATGCGTCACTCTCTACCCTCCATCG
CCAGGTAACTGCAATTGACGAGCAACCAGGGCTGGGCTGGCAGACTATCC
TGTCATTCACATCTGTTCTTTTCGCCGGCATGCAAGGAACGCTAGCGATG
GAATCTGCAGACCCATGTCGAATGTCATTCGAAAAGGTAAGCCTTCTTCT
TATTTTGGAAGCCCTTGAGGCGGGTGTCGTACTTGCCGCCGAGATTTATT
CTTTTGTCGAGCTTCGAGCTGTTCTACAGAATCGACTTCAATGGCTGTAC
TGGTTGCCGTACTGCCTTTTGATGTACGGAGTCATCAGCCTTCTAATGGA
CGTCGGTTTCACCCTGTACCTGGCAAATCGTTCTCGGGTGCGGTGGATCC
CTTTTTCCAACATCCATGAATATCGCAATGTCTGCACCTCACTTGTTACA
GTATTCCATCTTGTAATTACAACATGCCTCTCCATTATTCTTGTGGGATG
GCGACAGAGATGGTGGATGAAGGCGTCTCCTGGTGTATCGAGTCAGGAAG
CTCTGGAAGCTACGAGAACAGAATCGTTCCTCAGCGTTGGGGCAATGTGT
TTTTCATCTGTCTGGGCCCTTGCGCTCCTCATGATTTCCCTGGTGTTATG
CTGTACGCACAGGGATAAAATTCACAGATTTCTTGCTGTACTAAAAATCG
TGAAGACGAAGTTGAAATCTAGTCGTAGCAATGATGATCCACATGTTGCA
ACACAAGAAGTTACAGTCTGCATTGACAATCAAGACGCTAACTACAAGGA
AAATCCTGATGGACCTGAGAAAAGACTTGGTGAGGTGTGCACTCGAAGAC
AACGAAAAAGAAGTGTTCGAAATCCTGTAGCCTTCATTGTCAGGATTCTG
TGTCCCAACAAGTACGAGCCTCAATATCGGAGAGAAGAAACCAAATCGAT
GAAACTCATAAAGGACCGCTGCCGGCTATTGTTGCTTCTCAAGAACCAGA
TCAACATCCAGAAGGAAAAGAGAGGAAATGAGAAAACCTATTTTAAAGTG
ATTCTTGAAGAGACGTGTCCAAAAGCTCATATTAGTGATGAACAAGGCAA
AACACAGGAAACGGTTGAAGAAATCATAACGCATGAAAATATTGAGCAAA
TCAAAGTACTTGAAAGTGTTGAGCAAAGCAAATCGCATGAAAGTGTTGAG
CAAAGCCAAACACATGAAAGTGTTGAAAAAATCATACCGTTTGAAATTGT
TGACCAAATGAAAACACGAAGTGATGGGACCATCGAAACAACCACTGGTG
ATACCGATTCTGAGCCGAATGAATTGCTCGAAGAAAAAGAAGTCTTGACC
CTCTGCGACGCAGAAAGACTGGAAAATGGTTTAAAAGAGTATGCAAGGGC
TTTCAAAGGAACCAAAGTCACTTCAGGAGACAATCCGTCAAGTTTGGTGC
GCGTACGGAGAGGGGATGATGGTGCAGAAAATGCAAATTCGTCTCAACAT
AATGATTCTGTATTTGCGAACCGTCAAATGTGTATAGGTCTCATCGAGAC
CTGTGCGGATTTGGACGACGTTGTTGAAATTTACTGCAAAGAGTGTCCTC
TTCACGTTGGAAATGCGATTTTACCGGATTGTAATCATGACGATAGCGAA
GAACAAATCCATGGAAACGGAAACTCAGCCGCTCTTCACGTTGTATTTCT
CATTGCAACCCATATTTCTATTTTTCCTCTATTATTCTGTGTGGTGTGCG
GGGTCTGGCGATTATGGGACAGAGTGGACTCCGAAACATTCCGGGCTCTC
AAAGAACTTGCTGACATTGTCATCGTGATATCTATTGTTGAAATAGCTTT
GAATTTGAAACATATTCTATGGGGTCGTGGTTCTTCCAAAAAGGCCGACA
TTCCGGATTTTGAGCGCGTTGCAATTGATGCTCAAAACCAGTCAAGATAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:1913252..1915201-

>Gvermi3467.t1 ID=Gvermi3467.t1|Name=Gvermi3467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1950bp|location=Sequence derived from alignment at ScGOVlb_41:1913252..1915201- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTGTCTTCCCCAACTTGACCATGCGTCACTCTCTACCCTCCATCG
CCAGGTAACTGCAATTGACGAGCAACCAGGGCTGGGCTGGCAGACTATCC
TGTCATTCACATCTGTTCTTTTCGCCGGCATGCAAGGAACGCTAGCGATG
GAATCTGCAGACCCATGTCGAATGTCATTCGAAAAGGTAAGCCTTCTTCT
TATTTTGGAAGCCCTTGAGGCGGGTGTCGTACTTGCCGCCGAGATTTATT
CTTTTGTCGAGCTTCGAGCTGTTCTACAGAATCGACTTCAATGGCTGTAC
TGGTTGCCGTACTGCCTTTTGATGTACGGAGTCATCAGCCTTCTAATGGA
CGTCGGTTTCACCCTGTACCTGGCAAATCGTTCTCGGGTGCGGTGGATCC
CTTTTTCCAACATCCATGAATATCGCAATGTCTGCACCTCACTTGTTACA
GTATTCCATCTTGTAATTACAACATGCCTCTCCATTATTCTTGTGGGATG
GCGACAGAGATGGTGGATGAAGGCGTCTCCTGGTGTATCGAGTCAGGAAG
CTCTGGAAGCTACGAGAACAGAATCGTTCCTCAGCGTTGGGGCAATGTGT
TTTTCATCTGTCTGGGCCCTTGCGCTCCTCATGATTTCCCTGGTGTTATG
CTGTACGCACAGGGATAAAATTCACAGATTTCTTGCTGTACTAAAAATCG
TGAAGACGAAGTTGAAATCTAGTCGTAGCAATGATGATCCACATGTTGCA
ACACAAGAAGTTACAGTCTGCATTGACAATCAAGACGCTAACTACAAGGA
AAATCCTGATGGACCTGAGAAAAGACTTGGTGAGGTGTGCACTCGAAGAC
AACGAAAAAGAAGTGTTCGAAATCCTGTAGCCTTCATTGTCAGGATTCTG
TGTCCCAACAAGTACGAGCCTCAATATCGGAGAGAAGAAACCAAATCGAT
GAAACTCATAAAGGACCGCTGCCGGCTATTGTTGCTTCTCAAGAACCAGA
TCAACATCCAGAAGGAAAAGAGAGGAAATGAGAAAACCTATTTTAAAGTG
ATTCTTGAAGAGACGTGTCCAAAAGCTCATATTAGTGATGAACAAGGCAA
AACACAGGAAACGGTTGAAGAAATCATAACGCATGAAAATATTGAGCAAA
TCAAAGTACTTGAAAGTGTTGAGCAAAGCAAATCGCATGAAAGTGTTGAG
CAAAGCCAAACACATGAAAGTGTTGAAAAAATCATACCGTTTGAAATTGT
TGACCAAATGAAAACACGAAGTGATGGGACCATCGAAACAACCACTGGTG
ATACCGATTCTGAGCCGAATGAATTGCTCGAAGAAAAAGAAGTCTTGACC
CTCTGCGACGCAGAAAGACTGGAAAATGGTTTAAAAGAGTATGCAAGGGC
TTTCAAAGGAACCAAAGTCACTTCAGGAGACAATCCGTCAAGTTTGGTGC
GCGTACGGAGAGGGGATGATGGTGCAGAAAATGCAAATTCGTCTCAACAT
AATGATTCTGTATTTGCGAACCGTCAAATGTGTATAGGTCTCATCGAGAC
CTGTGCGGATTTGGACGACGTTGTTGAAATTTACTGCAAAGAGTGTCCTC
TTCACGTTGGAAATGCGATTTTACCGGATTGTAATCATGACGATAGCGAA
GAACAAATCCATGGAAACGGAAACTCAGCCGCTCTTCACGTTGTATTTCT
CATTGCAACCCATATTTCTATTTTTCCTCTATTATTCTGTGTGGTGTGCG
GGGTCTGGCGATTATGGGACAGAGTGGACTCCGAAACATTCCGGGCTCTC
AAAGAACTTGCTGACATTGTCATCGTGATATCTATTGTTGAAATAGCTTT
GAATTTGAAACATATTCTATGGGGTCGTGGTTCTTCCAAAAAGGCCGACA
TTCCGGATTTTGAGCGCGTTGCAATTGATGCTCAAAACCAGTCAAGATAG
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