Gvermi3462.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3462.t1
Unique NameGvermi3462.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length456
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:1798597..1799964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3462Gvermi3462Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 1798597..1799964 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3462.t1.stop1Gvermi3462.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 1798597..1798599 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3462.t1.CDS1Gvermi3462.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1798597..1799964 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3462.t1.exon1Gvermi3462.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1798597..1799964 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3462.t1.start1Gvermi3462.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 1799962..1799964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3462.t1Gvermi3462.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 1798597..1799964 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3462.t1 ID=Gvermi3462.t1|Name=Gvermi3462.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=456bp
MHSSTNFRSDISTLSAVVRQRAVHFEAQIKKDMLFWDELEDHDMKVKTCF
QRNKTGEVGIEITGENLDPSDFLPGVAFLIDVEHWKTFCHEVPSFSGIDR
DDPILFYKINKATRPSFRSVRLHMTAIHGSEVVPTVKVSFVNNLLKNHTK
KRFTFDDNPLYPVITRMLNAEDIISPGEIIHPNFEQPDMFSETVILPGSN
ITASGFLEGAFDNFRITRLFQLEVGWTQTLKADVASRLVAKSKYHASNER
EVYRRHIPDAYYSERLLFFGRLTVRAFSIVDFVQELQIDSGIDAYVRATT
ENVQAVTASFSSRQLDAESLLPPDYASYGTFDIHFDNTTEQTIAFSGFFG
ARPAILVEASLSGTSMTGKFSATLGLEASLVYRDPPFSSLSLFSSVVGSC
DQCHGLQGSASVKGKDLQYYVHQNGELVKHKILDSNLFQTELTTVCALPK
TCSVQ*
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spliced messenger RNA

>Gvermi3462.t1 ID=Gvermi3462.t1|Name=Gvermi3462.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at ScGOVlb_41:1798597..1799964- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTCGTCCACGAACTTTAGGTCCGACATATCGACTCTATCTGCTGT
GGTACGTCAAAGGGCTGTACATTTTGAAGCGCAAATCAAGAAGGATATGT
TGTTCTGGGACGAATTAGAAGATCATGACATGAAGGTGAAGACTTGTTTC
CAAAGGAATAAAACCGGAGAGGTGGGTATTGAAATCACGGGCGAGAACCT
TGACCCATCAGACTTTCTACCAGGTGTGGCTTTCTTGATCGATGTAGAGC
ACTGGAAAACGTTTTGTCATGAGGTTCCCTCGTTTAGTGGAATCGACCGC
GATGATCCGATTTTGTTCTATAAGATTAATAAGGCCACTAGGCCTTCCTT
CCGTTCAGTGCGTCTACACATGACTGCCATTCATGGCTCTGAGGTCGTTC
CGACCGTGAAAGTCTCCTTTGTCAACAACCTGTTGAAAAATCACACAAAG
AAGAGGTTCACATTTGATGACAATCCACTTTATCCGGTAATTACTCGTAT
GTTAAATGCGGAAGATATTATTTCTCCTGGCGAAATTATTCACCCCAATT
TTGAGCAGCCTGATATGTTTTCAGAAACTGTTATTCTTCCGGGCTCGAAT
ATTACTGCGTCCGGTTTTTTAGAAGGGGCTTTTGACAACTTCAGAATAAC
TCGATTATTTCAGTTGGAAGTTGGATGGACTCAGACGTTAAAAGCTGATG
TGGCATCTAGACTAGTGGCTAAGAGCAAGTATCACGCATCTAATGAACGA
GAAGTGTACCGAAGACACATTCCTGACGCTTACTATTCGGAACGTTTGCT
GTTTTTTGGACGGTTAACAGTGAGGGCATTTTCTATTGTAGACTTCGTTC
AAGAACTGCAAATCGATTCAGGAATAGATGCCTATGTACGTGCAACAACA
GAAAACGTTCAAGCTGTTACGGCAAGTTTCTCTTCACGACAGTTGGATGC
TGAGTCTTTGCTTCCTCCAGACTATGCGAGTTATGGAACTTTTGATATCC
ATTTTGATAATACAACTGAACAAACCATCGCCTTTAGTGGGTTTTTTGGG
GCTCGGCCTGCAATCCTCGTAGAAGCCAGTTTGAGTGGTACTTCTATGAC
GGGAAAGTTTTCGGCTACATTAGGACTGGAAGCGTCACTGGTGTACAGAG
ACCCTCCTTTCTCTTCGCTATCGCTTTTCAGTTCTGTGGTAGGGAGTTGT
GACCAGTGCCACGGTCTTCAAGGAAGTGCTTCTGTAAAGGGAAAAGATCT
TCAATACTATGTTCACCAAAACGGGGAGCTTGTTAAACACAAGATCCTCG
ACTCAAACCTGTTTCAGACTGAACTAACCACTGTTTGTGCCTTGCCCAAA
ACTTGTTCAGTGCAGTAG
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protein sequence of Gvermi3462.t1

>Gvermi3462.t1 ID=Gvermi3462.t1|Name=Gvermi3462.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=456bp
MHSSTNFRSDISTLSAVVRQRAVHFEAQIKKDMLFWDELEDHDMKVKTCF
QRNKTGEVGIEITGENLDPSDFLPGVAFLIDVEHWKTFCHEVPSFSGIDR
DDPILFYKINKATRPSFRSVRLHMTAIHGSEVVPTVKVSFVNNLLKNHTK
KRFTFDDNPLYPVITRMLNAEDIISPGEIIHPNFEQPDMFSETVILPGSN
ITASGFLEGAFDNFRITRLFQLEVGWTQTLKADVASRLVAKSKYHASNER
EVYRRHIPDAYYSERLLFFGRLTVRAFSIVDFVQELQIDSGIDAYVRATT
ENVQAVTASFSSRQLDAESLLPPDYASYGTFDIHFDNTTEQTIAFSGFFG
ARPAILVEASLSGTSMTGKFSATLGLEASLVYRDPPFSSLSLFSSVVGSC
DQCHGLQGSASVKGKDLQYYVHQNGELVKHKILDSNLFQTELTTVCALPK
TCSVQ*
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mRNA from alignment at ScGOVlb_41:1798597..1799964-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3462.t1 ID=Gvermi3462.t1|Name=Gvermi3462.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at ScGOVlb_41:1798597..1799964- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATTCGTCCACGAACTTTAGGTCCGACATATCGACTCTATCTGCTGT
GGTACGTCAAAGGGCTGTACATTTTGAAGCGCAAATCAAGAAGGATATGT
TGTTCTGGGACGAATTAGAAGATCATGACATGAAGGTGAAGACTTGTTTC
CAAAGGAATAAAACCGGAGAGGTGGGTATTGAAATCACGGGCGAGAACCT
TGACCCATCAGACTTTCTACCAGGTGTGGCTTTCTTGATCGATGTAGAGC
ACTGGAAAACGTTTTGTCATGAGGTTCCCTCGTTTAGTGGAATCGACCGC
GATGATCCGATTTTGTTCTATAAGATTAATAAGGCCACTAGGCCTTCCTT
CCGTTCAGTGCGTCTACACATGACTGCCATTCATGGCTCTGAGGTCGTTC
CGACCGTGAAAGTCTCCTTTGTCAACAACCTGTTGAAAAATCACACAAAG
AAGAGGTTCACATTTGATGACAATCCACTTTATCCGGTAATTACTCGTAT
GTTAAATGCGGAAGATATTATTTCTCCTGGCGAAATTATTCACCCCAATT
TTGAGCAGCCTGATATGTTTTCAGAAACTGTTATTCTTCCGGGCTCGAAT
ATTACTGCGTCCGGTTTTTTAGAAGGGGCTTTTGACAACTTCAGAATAAC
TCGATTATTTCAGTTGGAAGTTGGATGGACTCAGACGTTAAAAGCTGATG
TGGCATCTAGACTAGTGGCTAAGAGCAAGTATCACGCATCTAATGAACGA
GAAGTGTACCGAAGACACATTCCTGACGCTTACTATTCGGAACGTTTGCT
GTTTTTTGGACGGTTAACAGTGAGGGCATTTTCTATTGTAGACTTCGTTC
AAGAACTGCAAATCGATTCAGGAATAGATGCCTATGTACGTGCAACAACA
GAAAACGTTCAAGCTGTTACGGCAAGTTTCTCTTCACGACAGTTGGATGC
TGAGTCTTTGCTTCCTCCAGACTATGCGAGTTATGGAACTTTTGATATCC
ATTTTGATAATACAACTGAACAAACCATCGCCTTTAGTGGGTTTTTTGGG
GCTCGGCCTGCAATCCTCGTAGAAGCCAGTTTGAGTGGTACTTCTATGAC
GGGAAAGTTTTCGGCTACATTAGGACTGGAAGCGTCACTGGTGTACAGAG
ACCCTCCTTTCTCTTCGCTATCGCTTTTCAGTTCTGTGGTAGGGAGTTGT
GACCAGTGCCACGGTCTTCAAGGAAGTGCTTCTGTAAAGGGAAAAGATCT
TCAATACTATGTTCACCAAAACGGGGAGCTTGTTAAACACAAGATCCTCG
ACTCAAACCTGTTTCAGACTGAACTAACCACTGTTTGTGCCTTGCCCAAA
ACTTGTTCAGTGCAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:1798597..1799964-

>Gvermi3462.t1 ID=Gvermi3462.t1|Name=Gvermi3462.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1368bp|location=Sequence derived from alignment at ScGOVlb_41:1798597..1799964- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATTCGTCCACGAACTTTAGGTCCGACATATCGACTCTATCTGCTGT
GGTACGTCAAAGGGCTGTACATTTTGAAGCGCAAATCAAGAAGGATATGT
TGTTCTGGGACGAATTAGAAGATCATGACATGAAGGTGAAGACTTGTTTC
CAAAGGAATAAAACCGGAGAGGTGGGTATTGAAATCACGGGCGAGAACCT
TGACCCATCAGACTTTCTACCAGGTGTGGCTTTCTTGATCGATGTAGAGC
ACTGGAAAACGTTTTGTCATGAGGTTCCCTCGTTTAGTGGAATCGACCGC
GATGATCCGATTTTGTTCTATAAGATTAATAAGGCCACTAGGCCTTCCTT
CCGTTCAGTGCGTCTACACATGACTGCCATTCATGGCTCTGAGGTCGTTC
CGACCGTGAAAGTCTCCTTTGTCAACAACCTGTTGAAAAATCACACAAAG
AAGAGGTTCACATTTGATGACAATCCACTTTATCCGGTAATTACTCGTAT
GTTAAATGCGGAAGATATTATTTCTCCTGGCGAAATTATTCACCCCAATT
TTGAGCAGCCTGATATGTTTTCAGAAACTGTTATTCTTCCGGGCTCGAAT
ATTACTGCGTCCGGTTTTTTAGAAGGGGCTTTTGACAACTTCAGAATAAC
TCGATTATTTCAGTTGGAAGTTGGATGGACTCAGACGTTAAAAGCTGATG
TGGCATCTAGACTAGTGGCTAAGAGCAAGTATCACGCATCTAATGAACGA
GAAGTGTACCGAAGACACATTCCTGACGCTTACTATTCGGAACGTTTGCT
GTTTTTTGGACGGTTAACAGTGAGGGCATTTTCTATTGTAGACTTCGTTC
AAGAACTGCAAATCGATTCAGGAATAGATGCCTATGTACGTGCAACAACA
GAAAACGTTCAAGCTGTTACGGCAAGTTTCTCTTCACGACAGTTGGATGC
TGAGTCTTTGCTTCCTCCAGACTATGCGAGTTATGGAACTTTTGATATCC
ATTTTGATAATACAACTGAACAAACCATCGCCTTTAGTGGGTTTTTTGGG
GCTCGGCCTGCAATCCTCGTAGAAGCCAGTTTGAGTGGTACTTCTATGAC
GGGAAAGTTTTCGGCTACATTAGGACTGGAAGCGTCACTGGTGTACAGAG
ACCCTCCTTTCTCTTCGCTATCGCTTTTCAGTTCTGTGGTAGGGAGTTGT
GACCAGTGCCACGGTCTTCAAGGAAGTGCTTCTGTAAAGGGAAAAGATCT
TCAATACTATGTTCACCAAAACGGGGAGCTTGTTAAACACAAGATCCTCG
ACTCAAACCTGTTTCAGACTGAACTAACCACTGTTTGTGCCTTGCCCAAA
ACTTGTTCAGTGCAGTAG
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