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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 42345.XP_008804398.1 |
| PFAMs | ArgoL1,ArgoL2,ArgoMid,ArgoN,Gly-rich_Ago1,PAZ,Piwi |
| Max annot lvl | 35493|Streptophyta |
| KEGG ko | ko:K11593 |
| Evalue | 2.27e-115 |
| EggNOG OGs | KOG1041@1|root,KOG1041@2759|Eukaryota,37MK8@33090|Viridiplantae,3GBB2@35493|Streptophyta,3KYFE@4447|Liliopsida |
| Description | Belongs to the argonaute family |
| COG category | J |
| BRITE | ko00000,ko03019,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi3447.t1 ID=Gvermi3447.t1|Name=Gvermi3447.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=859bp MSNNRDKPMRRPGHGKVGKSIKIETNFVMLGIPKRLKASQYAVQLFRDKT EKGRTSQREVSATELISFNRNCFKLLLDKYGGEFGCLLAYNGRSIAYAPT EVNRNVLGVRMKLKVNKEGERPSKDQSHETVEIVLSHSKYLQYEDLASGA VDRSATSEYIACLDVVLAQAAAVGHVQVGRSFYNSAGAVPLGRRNVTSSA WMGFYQSVRMGELGLLVNMDESFTAFWNQGKRPLSDLIRDANDRQELRCS DPRALRNVAQKLRGVKVKAMHTGIVYKVFGFSDRGADRITFDSDGRRVSI TQYFHDTYNMRVRHGGAPCVKTHPKRDTYLPIEFLAVVPDQRVAGMLTPD EIQTMVRTASTKPHVRRSNAVKKIQQLKYHNHSICKDFRVKVEPDLIKLT ARVLPSPIIQYTKGNVTPSNGQWRARSSVINPATVLSWAVCSMARLSKDE VQTFAKDLIAAMKRAGLRLAMEYPKLYRCDERDIDREMHNMSSDFRKDKS LKHMRNPCLQLLVIIKERQDSKIYNMIKREGDLNLGVITQVCLAKHCGYR ARGREMYCDNVVLKINSKLGGQNGIVARYGVDKRCPVPDVSFLDIPHIIL GADVTHPMAGGSGPSIAALVGSRDRQGLQFASSLRSQTGKQEMISEIGEM FKEVYRSWFNAFKGKVHAQKIIMFRDGVSEGQFEEVMQREVHSIRKACME ISDSMRPLITYIIVTKRHHARFFPGAREYSDGKSGNIPPGTVVDTDVTSN EYYDFYLNSHAGIQGTNKPSKYTVLIDENKIPPDALYGYIYRLAHCFARC NRPVSMVHSAYYAHLLAFRGRAYMGDDMSDTASQASSSSKIPAVPNATAM LRNMLYFV* back to topspliced messenger RNA >Gvermi3447.t1 ID=Gvermi3447.t1|Name=Gvermi3447.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2577bp|location=Sequence derived from alignment at ScGOVlb_41:1454929..1457505- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAGCAATAACCGCGACAAGCCCATGCGCCGCCCCGGCCACGGCAAAGT GGGCAAGTCCATCAAAATTGAAACCAACTTTGTTATGTTGGGTATTCCGA AGCGTCTCAAAGCCTCCCAGTACGCCGTGCAGCTCTTCCGCGACAAGACC GAGAAAGGCCGCACTTCTCAGCGCGAAGTCAGCGCAACCGAGCTCATCTC CTTCAATCGCAACTGCTTCAAACTTTTGTTGGACAAGTATGGCGGTGAGT TTGGCTGCTTACTGGCCTACAATGGTCGCTCCATTGCCTATGCCCCCACC GAGGTCAATCGCAACGTCCTGGGAGTCCGCATGAAACTCAAGGTCAATAA GGAGGGCGAAAGGCCTTCCAAAGACCAATCCCATGAGACCGTCGAAATCG TGCTCAGCCATTCAAAGTACCTCCAGTATGAAGACCTGGCCTCTGGCGCC GTAGATAGGTCTGCCACGTCCGAGTACATTGCCTGCTTGGATGTTGTTCT TGCGCAAGCTGCTGCCGTCGGTCACGTTCAGGTTGGCCGCTCCTTCTATA ATTCGGCAGGTGCAGTCCCTCTTGGCCGTCGAAACGTAACCAGCAGTGCG TGGATGGGTTTTTACCAAAGTGTTCGCATGGGCGAGCTTGGATTATTGGT CAACATGGACGAATCGTTTACTGCCTTTTGGAACCAAGGCAAAAGGCCCC TCTCAGATTTAATCCGTGATGCTAATGACAGGCAGGAGCTAAGATGCAGT GACCCCAGGGCACTTCGGAATGTTGCGCAGAAGTTAAGAGGTGTCAAGGT CAAGGCTATGCACACTGGCATCGTGTACAAAGTATTCGGCTTTTCCGACC GAGGTGCGGACAGAATCACCTTCGACTCTGACGGCCGCAGAGTTTCTATA ACTCAGTACTTTCACGATACCTACAACATGAGAGTGAGACACGGAGGTGC CCCGTGCGTCAAAACTCATCCAAAGAGAGATACGTATCTCCCCATTGAAT TCCTAGCCGTCGTTCCTGATCAACGTGTGGCCGGCATGTTGACTCCGGAT GAAATCCAAACAATGGTCAGGACTGCAAGCACAAAACCACACGTTCGAAG GAGTAATGCAGTCAAAAAAATCCAACAGCTTAAGTATCACAATCATTCAA TATGCAAAGATTTCCGAGTTAAAGTAGAACCCGATTTGATCAAGTTGACA GCTCGTGTATTGCCTTCACCAATTATCCAGTACACGAAAGGCAATGTCAC GCCTTCAAACGGCCAGTGGAGAGCGAGGAGCTCGGTGATCAACCCCGCAA CGGTGTTGTCGTGGGCGGTCTGCAGCATGGCAAGATTGAGTAAGGATGAA GTTCAAACATTTGCCAAGGACTTGATAGCTGCGATGAAAAGGGCCGGACT CCGCCTTGCCATGGAATACCCGAAACTTTACCGCTGTGATGAAAGGGATA TAGACCGTGAAATGCACAACATGTCTAGTGATTTCAGGAAGGACAAAAGC TTAAAACATATGCGAAATCCATGTCTCCAGTTGCTTGTCATCATCAAGGA GAGACAGGACTCAAAGATCTACAACATGATCAAAAGAGAAGGTGATCTTA ACCTCGGCGTCATTACCCAGGTTTGTCTGGCGAAGCACTGTGGCTATAGA GCGAGAGGGCGCGAAATGTATTGCGACAATGTTGTGCTCAAGATTAATTC AAAACTCGGCGGTCAGAATGGAATTGTTGCTCGATATGGAGTTGACAAAC GCTGTCCGGTACCTGACGTCAGCTTTCTAGACATACCCCATATAATCCTT GGAGCTGACGTTACTCATCCAATGGCGGGAGGAAGTGGACCGAGTATTGC TGCCCTAGTTGGCTCTCGAGATCGCCAGGGGTTACAATTTGCTTCCTCGC TCCGCAGTCAAACAGGTAAACAGGAAATGATCAGTGAAATAGGGGAAATG TTCAAGGAGGTCTATCGTTCGTGGTTTAATGCTTTCAAGGGGAAGGTGCA TGCTCAAAAGATCATTATGTTTCGGGACGGCGTATCCGAAGGTCAATTTG AAGAGGTTATGCAACGTGAAGTACATTCGATTCGCAAAGCTTGCATGGAG ATTAGTGACAGCATGCGACCGTTGATCACATACATCATTGTCACTAAGCG CCACCACGCGCGATTCTTTCCCGGTGCCAGGGAATATTCTGATGGGAAGT CTGGAAACATCCCACCGGGAACCGTTGTGGATACGGACGTGACTAGTAAC GAGTATTATGACTTTTACTTGAATTCGCACGCTGGAATTCAAGGGACAAA CAAACCGTCAAAGTATACTGTGCTTATCGACGAGAACAAGATACCGCCAG ATGCGTTGTATGGTTACATATATCGACTAGCTCATTGCTTCGCGAGGTGC AATCGCCCTGTTTCAATGGTACATAGTGCTTACTATGCGCATCTTTTGGC CTTTCGTGGACGTGCTTACATGGGCGATGATATGTCCGACACTGCGTCTC AAGCGTCTAGTAGTTCCAAAATTCCAGCGGTGCCGAATGCAACTGCTATG TTGAGGAATATGCTCTACTTTGTGTAG back to topprotein sequence of Gvermi3447.t1 >Gvermi3447.t1 ID=Gvermi3447.t1|Name=Gvermi3447.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=859bp
MSNNRDKPMRRPGHGKVGKSIKIETNFVMLGIPKRLKASQYAVQLFRDKT EKGRTSQREVSATELISFNRNCFKLLLDKYGGEFGCLLAYNGRSIAYAPT EVNRNVLGVRMKLKVNKEGERPSKDQSHETVEIVLSHSKYLQYEDLASGA VDRSATSEYIACLDVVLAQAAAVGHVQVGRSFYNSAGAVPLGRRNVTSSA WMGFYQSVRMGELGLLVNMDESFTAFWNQGKRPLSDLIRDANDRQELRCS DPRALRNVAQKLRGVKVKAMHTGIVYKVFGFSDRGADRITFDSDGRRVSI TQYFHDTYNMRVRHGGAPCVKTHPKRDTYLPIEFLAVVPDQRVAGMLTPD EIQTMVRTASTKPHVRRSNAVKKIQQLKYHNHSICKDFRVKVEPDLIKLT ARVLPSPIIQYTKGNVTPSNGQWRARSSVINPATVLSWAVCSMARLSKDE VQTFAKDLIAAMKRAGLRLAMEYPKLYRCDERDIDREMHNMSSDFRKDKS LKHMRNPCLQLLVIIKERQDSKIYNMIKREGDLNLGVITQVCLAKHCGYR ARGREMYCDNVVLKINSKLGGQNGIVARYGVDKRCPVPDVSFLDIPHIIL GADVTHPMAGGSGPSIAALVGSRDRQGLQFASSLRSQTGKQEMISEIGEM FKEVYRSWFNAFKGKVHAQKIIMFRDGVSEGQFEEVMQREVHSIRKACME ISDSMRPLITYIIVTKRHHARFFPGAREYSDGKSGNIPPGTVVDTDVTSN EYYDFYLNSHAGIQGTNKPSKYTVLIDENKIPPDALYGYIYRLAHCFARC NRPVSMVHSAYYAHLLAFRGRAYMGDDMSDTASQASSSSKIPAVPNATAM LRNMLYFV* back to topmRNA from alignment at ScGOVlb_41:1454929..1457505- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi3447.t1 ID=Gvermi3447.t1|Name=Gvermi3447.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2577bp|location=Sequence derived from alignment at ScGOVlb_41:1454929..1457505- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGAGCAATAACCGCGACAAGCCCATGCGCCGCCCCGGCCACGGCAAAGT
GGGCAAGTCCATCAAAATTGAAACCAACTTTGTTATGTTGGGTATTCCGA
AGCGTCTCAAAGCCTCCCAGTACGCCGTGCAGCTCTTCCGCGACAAGACC
GAGAAAGGCCGCACTTCTCAGCGCGAAGTCAGCGCAACCGAGCTCATCTC
CTTCAATCGCAACTGCTTCAAACTTTTGTTGGACAAGTATGGCGGTGAGT
TTGGCTGCTTACTGGCCTACAATGGTCGCTCCATTGCCTATGCCCCCACC
GAGGTCAATCGCAACGTCCTGGGAGTCCGCATGAAACTCAAGGTCAATAA
GGAGGGCGAAAGGCCTTCCAAAGACCAATCCCATGAGACCGTCGAAATCG
TGCTCAGCCATTCAAAGTACCTCCAGTATGAAGACCTGGCCTCTGGCGCC
GTAGATAGGTCTGCCACGTCCGAGTACATTGCCTGCTTGGATGTTGTTCT
TGCGCAAGCTGCTGCCGTCGGTCACGTTCAGGTTGGCCGCTCCTTCTATA
ATTCGGCAGGTGCAGTCCCTCTTGGCCGTCGAAACGTAACCAGCAGTGCG
TGGATGGGTTTTTACCAAAGTGTTCGCATGGGCGAGCTTGGATTATTGGT
CAACATGGACGAATCGTTTACTGCCTTTTGGAACCAAGGCAAAAGGCCCC
TCTCAGATTTAATCCGTGATGCTAATGACAGGCAGGAGCTAAGATGCAGT
GACCCCAGGGCACTTCGGAATGTTGCGCAGAAGTTAAGAGGTGTCAAGGT
CAAGGCTATGCACACTGGCATCGTGTACAAAGTATTCGGCTTTTCCGACC
GAGGTGCGGACAGAATCACCTTCGACTCTGACGGCCGCAGAGTTTCTATA
ACTCAGTACTTTCACGATACCTACAACATGAGAGTGAGACACGGAGGTGC
CCCGTGCGTCAAAACTCATCCAAAGAGAGATACGTATCTCCCCATTGAAT
TCCTAGCCGTCGTTCCTGATCAACGTGTGGCCGGCATGTTGACTCCGGAT
GAAATCCAAACAATGGTCAGGACTGCAAGCACAAAACCACACGTTCGAAG
GAGTAATGCAGTCAAAAAAATCCAACAGCTTAAGTATCACAATCATTCAA
TATGCAAAGATTTCCGAGTTAAAGTAGAACCCGATTTGATCAAGTTGACA
GCTCGTGTATTGCCTTCACCAATTATCCAGTACACGAAAGGCAATGTCAC
GCCTTCAAACGGCCAGTGGAGAGCGAGGAGCTCGGTGATCAACCCCGCAA
CGGTGTTGTCGTGGGCGGTCTGCAGCATGGCAAGATTGAGTAAGGATGAA
GTTCAAACATTTGCCAAGGACTTGATAGCTGCGATGAAAAGGGCCGGACT
CCGCCTTGCCATGGAATACCCGAAACTTTACCGCTGTGATGAAAGGGATA
TAGACCGTGAAATGCACAACATGTCTAGTGATTTCAGGAAGGACAAAAGC
TTAAAACATATGCGAAATCCATGTCTCCAGTTGCTTGTCATCATCAAGGA
GAGACAGGACTCAAAGATCTACAACATGATCAAAAGAGAAGGTGATCTTA
ACCTCGGCGTCATTACCCAGGTTTGTCTGGCGAAGCACTGTGGCTATAGA
GCGAGAGGGCGCGAAATGTATTGCGACAATGTTGTGCTCAAGATTAATTC
AAAACTCGGCGGTCAGAATGGAATTGTTGCTCGATATGGAGTTGACAAAC
GCTGTCCGGTACCTGACGTCAGCTTTCTAGACATACCCCATATAATCCTT
GGAGCTGACGTTACTCATCCAATGGCGGGAGGAAGTGGACCGAGTATTGC
TGCCCTAGTTGGCTCTCGAGATCGCCAGGGGTTACAATTTGCTTCCTCGC
TCCGCAGTCAAACAGGTAAACAGGAAATGATCAGTGAAATAGGGGAAATG
TTCAAGGAGGTCTATCGTTCGTGGTTTAATGCTTTCAAGGGGAAGGTGCA
TGCTCAAAAGATCATTATGTTTCGGGACGGCGTATCCGAAGGTCAATTTG
AAGAGGTTATGCAACGTGAAGTACATTCGATTCGCAAAGCTTGCATGGAG
ATTAGTGACAGCATGCGACCGTTGATCACATACATCATTGTCACTAAGCG
CCACCACGCGCGATTCTTTCCCGGTGCCAGGGAATATTCTGATGGGAAGT
CTGGAAACATCCCACCGGGAACCGTTGTGGATACGGACGTGACTAGTAAC
GAGTATTATGACTTTTACTTGAATTCGCACGCTGGAATTCAAGGGACAAA
CAAACCGTCAAAGTATACTGTGCTTATCGACGAGAACAAGATACCGCCAG
ATGCGTTGTATGGTTACATATATCGACTAGCTCATTGCTTCGCGAGGTGC
AATCGCCCTGTTTCAATGGTACATAGTGCTTACTATGCGCATCTTTTGGC
CTTTCGTGGACGTGCTTACATGGGCGATGATATGTCCGACACTGCGTCTC
AAGCGTCTAGTAGTTCCAAAATTCCAGCGGTGCCGAATGCAACTGCTATG
TTGAGGAATATGCTCTACTTTGTGTAG back to topCoding sequence (CDS) from alignment at ScGOVlb_41:1454929..1457505- >Gvermi3447.t1 ID=Gvermi3447.t1|Name=Gvermi3447.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2577bp|location=Sequence derived from alignment at ScGOVlb_41:1454929..1457505- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGAGCAATAACCGCGACAAGCCCATGCGCCGCCCCGGCCACGGCAAAGT GGGCAAGTCCATCAAAATTGAAACCAACTTTGTTATGTTGGGTATTCCGA AGCGTCTCAAAGCCTCCCAGTACGCCGTGCAGCTCTTCCGCGACAAGACC GAGAAAGGCCGCACTTCTCAGCGCGAAGTCAGCGCAACCGAGCTCATCTC CTTCAATCGCAACTGCTTCAAACTTTTGTTGGACAAGTATGGCGGTGAGT TTGGCTGCTTACTGGCCTACAATGGTCGCTCCATTGCCTATGCCCCCACC GAGGTCAATCGCAACGTCCTGGGAGTCCGCATGAAACTCAAGGTCAATAA GGAGGGCGAAAGGCCTTCCAAAGACCAATCCCATGAGACCGTCGAAATCG TGCTCAGCCATTCAAAGTACCTCCAGTATGAAGACCTGGCCTCTGGCGCC GTAGATAGGTCTGCCACGTCCGAGTACATTGCCTGCTTGGATGTTGTTCT TGCGCAAGCTGCTGCCGTCGGTCACGTTCAGGTTGGCCGCTCCTTCTATA ATTCGGCAGGTGCAGTCCCTCTTGGCCGTCGAAACGTAACCAGCAGTGCG TGGATGGGTTTTTACCAAAGTGTTCGCATGGGCGAGCTTGGATTATTGGT CAACATGGACGAATCGTTTACTGCCTTTTGGAACCAAGGCAAAAGGCCCC TCTCAGATTTAATCCGTGATGCTAATGACAGGCAGGAGCTAAGATGCAGT GACCCCAGGGCACTTCGGAATGTTGCGCAGAAGTTAAGAGGTGTCAAGGT CAAGGCTATGCACACTGGCATCGTGTACAAAGTATTCGGCTTTTCCGACC GAGGTGCGGACAGAATCACCTTCGACTCTGACGGCCGCAGAGTTTCTATA ACTCAGTACTTTCACGATACCTACAACATGAGAGTGAGACACGGAGGTGC CCCGTGCGTCAAAACTCATCCAAAGAGAGATACGTATCTCCCCATTGAAT TCCTAGCCGTCGTTCCTGATCAACGTGTGGCCGGCATGTTGACTCCGGAT GAAATCCAAACAATGGTCAGGACTGCAAGCACAAAACCACACGTTCGAAG GAGTAATGCAGTCAAAAAAATCCAACAGCTTAAGTATCACAATCATTCAA TATGCAAAGATTTCCGAGTTAAAGTAGAACCCGATTTGATCAAGTTGACA GCTCGTGTATTGCCTTCACCAATTATCCAGTACACGAAAGGCAATGTCAC GCCTTCAAACGGCCAGTGGAGAGCGAGGAGCTCGGTGATCAACCCCGCAA CGGTGTTGTCGTGGGCGGTCTGCAGCATGGCAAGATTGAGTAAGGATGAA GTTCAAACATTTGCCAAGGACTTGATAGCTGCGATGAAAAGGGCCGGACT CCGCCTTGCCATGGAATACCCGAAACTTTACCGCTGTGATGAAAGGGATA TAGACCGTGAAATGCACAACATGTCTAGTGATTTCAGGAAGGACAAAAGC TTAAAACATATGCGAAATCCATGTCTCCAGTTGCTTGTCATCATCAAGGA GAGACAGGACTCAAAGATCTACAACATGATCAAAAGAGAAGGTGATCTTA ACCTCGGCGTCATTACCCAGGTTTGTCTGGCGAAGCACTGTGGCTATAGA GCGAGAGGGCGCGAAATGTATTGCGACAATGTTGTGCTCAAGATTAATTC AAAACTCGGCGGTCAGAATGGAATTGTTGCTCGATATGGAGTTGACAAAC GCTGTCCGGTACCTGACGTCAGCTTTCTAGACATACCCCATATAATCCTT GGAGCTGACGTTACTCATCCAATGGCGGGAGGAAGTGGACCGAGTATTGC TGCCCTAGTTGGCTCTCGAGATCGCCAGGGGTTACAATTTGCTTCCTCGC TCCGCAGTCAAACAGGTAAACAGGAAATGATCAGTGAAATAGGGGAAATG TTCAAGGAGGTCTATCGTTCGTGGTTTAATGCTTTCAAGGGGAAGGTGCA TGCTCAAAAGATCATTATGTTTCGGGACGGCGTATCCGAAGGTCAATTTG AAGAGGTTATGCAACGTGAAGTACATTCGATTCGCAAAGCTTGCATGGAG ATTAGTGACAGCATGCGACCGTTGATCACATACATCATTGTCACTAAGCG CCACCACGCGCGATTCTTTCCCGGTGCCAGGGAATATTCTGATGGGAAGT CTGGAAACATCCCACCGGGAACCGTTGTGGATACGGACGTGACTAGTAAC GAGTATTATGACTTTTACTTGAATTCGCACGCTGGAATTCAAGGGACAAA CAAACCGTCAAAGTATACTGTGCTTATCGACGAGAACAAGATACCGCCAG ATGCGTTGTATGGTTACATATATCGACTAGCTCATTGCTTCGCGAGGTGC AATCGCCCTGTTTCAATGGTACATAGTGCTTACTATGCGCATCTTTTGGC CTTTCGTGGACGTGCTTACATGGGCGATGATATGTCCGACACTGCGTCTC AAGCGTCTAGTAGTTCCAAAATTCCAGCGGTGCCGAATGCAACTGCTATG TTGAGGAATATGCTCTACTTTGTGTAG back to top
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