Gvermi3391.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3391.t2
Unique NameGvermi3391.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:1320792..1321360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog666685.R2APBS1_0345
Preferred namecutA
PFAMsCutA1
Max annot lvl135614|Xanthomonadales
KEGG koko:K03926
Evalue2.74e-28
EggNOG OGsCOG1324@1|root,COG1324@2|Bacteria,1N6TN@1224|Proteobacteria,1SCFM@1236|Gammaproteobacteria,1X7GP@135614|Xanthomonadales
Descriptionprotein involved in tolerance to divalent cations
COG categoryP
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3391Gvermi3391Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 1320792..1321360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3391.t2Gvermi3391.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 1320792..1321360 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3391.t2.start1Gvermi3391.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 1320792..1320794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3391.t2.CDS1Gvermi3391.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1320792..1320880 +
Gvermi3391.t2.CDS2Gvermi3391.t2.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1321009..1321360 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3391.t2.exon1Gvermi3391.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1320792..1320880 +
Gvermi3391.t2.exon2Gvermi3391.t2.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1321009..1321360 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3391.t2.intron1Gvermi3391.t2.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 1320881..1321008 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3391.t2.stop1Gvermi3391.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 1321358..1321360 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3391.t2 ID=Gvermi3391.t2|Name=Gvermi3391.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=147bp
MRYASAVALSLVALVTVVASVTLSQRVSKSDAVERQQQTAYVMAMSTVPD
ESTAQAIASALVSERVVACVNTVSSVKSTYRWQGNVVHDSELLLIMKTRS
SLVGTLQKRLTELHPYDVPELIVHPISGGNAAYLQWLHDSTDDSTQ*
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spliced messenger RNA

>Gvermi3391.t2 ID=Gvermi3391.t2|Name=Gvermi3391.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=441bp|location=Sequence derived from alignment at ScGOVlb_41:1320792..1321360+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTATGCTTCCGCCGTCGCCCTGTCGCTGGTCGCGCTCGTCACCGT
CGTGGCCTCCGTGACCCTTTCGCAGCGCGTCAGCAAAAGTGACGCCGTGG
AGCGCCAGCAGCAAACTGCGTATGTGATGGCCATGTCCACCGTGCCCGAC
GAGTCGACGGCGCAAGCCATAGCCAGCGCTCTGGTGTCCGAGCGCGTGGT
GGCGTGCGTGAACACTGTGAGCTCCGTGAAGAGCACGTATCGGTGGCAGG
GAAACGTGGTGCACGACAGCGAGTTGCTTCTGATCATGAAGACGCGCTCC
TCGCTAGTGGGCACGTTGCAGAAGCGGTTGACCGAGCTTCATCCGTACGA
CGTGCCCGAACTGATTGTTCACCCCATCAGCGGCGGCAATGCGGCGTACC
TGCAATGGCTGCACGACTCGACGGATGACAGCACGCAGTGA
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protein sequence of Gvermi3391.t2

>Gvermi3391.t2 ID=Gvermi3391.t2|Name=Gvermi3391.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=147bp
MRYASAVALSLVALVTVVASVTLSQRVSKSDAVERQQQTAYVMAMSTVPD
ESTAQAIASALVSERVVACVNTVSSVKSTYRWQGNVVHDSELLLIMKTRS
SLVGTLQKRLTELHPYDVPELIVHPISGGNAAYLQWLHDSTDDSTQ*
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mRNA from alignment at ScGOVlb_41:1320792..1321360+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3391.t2 ID=Gvermi3391.t2|Name=Gvermi3391.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=569bp|location=Sequence derived from alignment at ScGOVlb_41:1320792..1321360+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGGTATGCTTCCGCCGTCGCCCTGTCGCTGGTCGCGCTCGTCACCGT
CGTGGCCTCCGTGACCCTTTCGCAGCGCGTCAGCAAAAGGTTCGCCCGCA
CCCGCTTCGGTTCGCCCGCCGCTGCGCGGCCCCCCCCTAACCGCTCTCCC
CCTTCCATCACCGTCGCTAACCCTTTTCTAACCTTACTCGCGCGTTGCGT
TTGCTCGCTCGCGCCAGTGACGCCGTGGAGCGCCAGCAGCAAACTGCGTA
TGTGATGGCCATGTCCACCGTGCCCGACGAGTCGACGGCGCAAGCCATAG
CCAGCGCTCTGGTGTCCGAGCGCGTGGTGGCGTGCGTGAACACTGTGAGC
TCCGTGAAGAGCACGTATCGGTGGCAGGGAAACGTGGTGCACGACAGCGA
GTTGCTTCTGATCATGAAGACGCGCTCCTCGCTAGTGGGCACGTTGCAGA
AGCGGTTGACCGAGCTTCATCCGTACGACGTGCCCGAACTGATTGTTCAC
CCCATCAGCGGCGGCAATGCGGCGTACCTGCAATGGCTGCACGACTCGAC
GGATGACAGCACGCAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:1320792..1321360+

>Gvermi3391.t2 ID=Gvermi3391.t2|Name=Gvermi3391.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=441bp|location=Sequence derived from alignment at ScGOVlb_41:1320792..1321360+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGGTATGCTTCCGCCGTCGCCCTGTCGCTGGTCGCGCTCGTCACCGT
CGTGGCCTCCGTGACCCTTTCGCAGCGCGTCAGCAAAAGTGACGCCGTGG
AGCGCCAGCAGCAAACTGCGTATGTGATGGCCATGTCCACCGTGCCCGAC
GAGTCGACGGCGCAAGCCATAGCCAGCGCTCTGGTGTCCGAGCGCGTGGT
GGCGTGCGTGAACACTGTGAGCTCCGTGAAGAGCACGTATCGGTGGCAGG
GAAACGTGGTGCACGACAGCGAGTTGCTTCTGATCATGAAGACGCGCTCC
TCGCTAGTGGGCACGTTGCAGAAGCGGTTGACCGAGCTTCATCCGTACGA
CGTGCCCGAACTGATTGTTCACCCCATCAGCGGCGGCAATGCGGCGTACC
TGCAATGGCTGCACGACTCGACGGATGACAGCACGCAGTGA
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