Gvermi3353.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3353.t1
Unique NameGvermi3353.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:1200215..1201103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3353Gvermi3353Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 1200215..1201103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3353.t1Gvermi3353.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 1200215..1201103 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3353.t1.stop1Gvermi3353.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 1200215..1200217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3353.t1.CDS1Gvermi3353.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1200215..1200283 -
Gvermi3353.t1.CDS2Gvermi3353.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 1200378..1201103 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3353.t1.exon1Gvermi3353.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1200215..1200283 -
Gvermi3353.t1.exon2Gvermi3353.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 1200378..1201103 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3353.t1.intron1Gvermi3353.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_41 1200284..1200377 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3353.t1.start1Gvermi3353.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 1201101..1201103 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3353.t1 ID=Gvermi3353.t1|Name=Gvermi3353.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=265bp
MDSSGTIRRMSSSDIIPAFEDPPSAHSQKDIIADGYRMITRTLREPLFEL
YCEAELDSSQFIVQFDVFPFSAGGQRLAFEGRMLERLENGRLKSHMPVVV
KLQMATGAYLCRTMSERTRVCEVEADNTVRKHEITSSILEKWCSLGTNKQ
VDILPAIKLVVTRECTLGNIPQEKFPVLHHLFKKLSLDAVLYNGAIGTVE
EYLDGKFTKFLNNDGEHNHQVRANFPAAFAHWSWVDSGGTIMTWGSWGWR
NSSRSTGVTGCATT*
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spliced messenger RNA

>Gvermi3353.t1 ID=Gvermi3353.t1|Name=Gvermi3353.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=795bp|location=Sequence derived from alignment at ScGOVlb_41:1200215..1201103- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCATCCGGAACGATTAGAAGGATGTCATCGTCCGATATTATTCC
AGCTTTTGAAGACCCTCCATCTGCGCACTCTCAAAAAGATATCATCGCCG
ATGGGTATCGCATGATAACTCGAACACTACGTGAGCCTCTTTTCGAACTG
TACTGTGAGGCAGAACTAGATTCATCGCAATTTATTGTACAATTCGATGT
GTTTCCATTCTCAGCTGGGGGGCAACGACTGGCGTTTGAGGGGCGGATGC
TCGAGCGCCTTGAAAACGGGCGGCTCAAAAGCCACATGCCGGTGGTGGTC
AAGCTTCAAATGGCCACGGGTGCCTACTTGTGCCGCACGATGAGCGAAAG
AACTCGCGTGTGCGAAGTGGAGGCAGACAACACGGTGCGGAAACATGAAA
TCACGTCCAGCATTCTTGAAAAGTGGTGCTCGCTTGGAACAAACAAACAG
GTAGATATCTTACCCGCTATCAAGCTTGTTGTGACCAGGGAGTGCACGTT
GGGTAACATTCCGCAGGAAAAATTTCCGGTGCTGCATCACTTGTTCAAGA
AGCTTTCGTTGGACGCCGTGCTGTACAACGGTGCGATTGGCACCGTTGAA
GAATATCTGGATGGGAAGTTCACAAAGTTTCTCAACAATGACGGTGAGCA
CAACCATCAGGTGCGAGCGAATTTTCCGGCTGCGTTTGCACACTGGTCGT
GGGTTGACTCTGGCGGAACGATTATGACCTGGGGATCATGGGGGTGGAGG
AATTCTTCGCGAAGCACAGGTGTAACGGGCTGTGCAACGACCTGA
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protein sequence of Gvermi3353.t1

>Gvermi3353.t1 ID=Gvermi3353.t1|Name=Gvermi3353.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=265bp
MDSSGTIRRMSSSDIIPAFEDPPSAHSQKDIIADGYRMITRTLREPLFEL
YCEAELDSSQFIVQFDVFPFSAGGQRLAFEGRMLERLENGRLKSHMPVVV
KLQMATGAYLCRTMSERTRVCEVEADNTVRKHEITSSILEKWCSLGTNKQ
VDILPAIKLVVTRECTLGNIPQEKFPVLHHLFKKLSLDAVLYNGAIGTVE
EYLDGKFTKFLNNDGEHNHQVRANFPAAFAHWSWVDSGGTIMTWGSWGWR
NSSRSTGVTGCATT*
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mRNA from alignment at ScGOVlb_41:1200215..1201103-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3353.t1 ID=Gvermi3353.t1|Name=Gvermi3353.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=889bp|location=Sequence derived from alignment at ScGOVlb_41:1200215..1201103- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACTCATCCGGAACGATTAGAAGGATGTCATCGTCCGATATTATTCC
AGCTTTTGAAGACCCTCCATCTGCGCACTCTCAAAAAGATATCATCGCCG
ATGGGTATCGCATGATAACTCGAACACTACGTGAGCCTCTTTTCGAACTG
TACTGTGAGGCAGAACTAGATTCATCGCAATTTATTGTACAATTCGATGT
GTTTCCATTCTCAGCTGGGGGGCAACGACTGGCGTTTGAGGGGCGGATGC
TCGAGCGCCTTGAAAACGGGCGGCTCAAAAGCCACATGCCGGTGGTGGTC
AAGCTTCAAATGGCCACGGGTGCCTACTTGTGCCGCACGATGAGCGAAAG
AACTCGCGTGTGCGAAGTGGAGGCAGACAACACGGTGCGGAAACATGAAA
TCACGTCCAGCATTCTTGAAAAGTGGTGCTCGCTTGGAACAAACAAACAG
GTAGATATCTTACCCGCTATCAAGCTTGTTGTGACCAGGGAGTGCACGTT
GGGTAACATTCCGCAGGAAAAATTTCCGGTGCTGCATCACTTGTTCAAGA
AGCTTTCGTTGGACGCCGTGCTGTACAACGGTGCGATTGGCACCGTTGAA
GAATATCTGGATGGGAAGTTCACAAAGTTTCTCAACAATGACGGTGAGCA
CAACCATCAGGTGCGAGCGAATTTTCCGGCTGCGTTTGCACACTGGTCGT
GGGTTGACTCTGGCGGAACGATTATGGTGAGCGATATTCAAGGGGTGCGC
AGTGGGAATGGATACGTGCTGACCGACCCGTGCGTGCACTCGGTGAGCGG
GGCGACGTTCGGGGCGACAGACCTGGGGATCATGGGGGTGGAGGAATTCT
TCGCGAAGCACAGGTGTAACGGGCTGTGCAACGACCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:1200215..1201103-

>Gvermi3353.t1 ID=Gvermi3353.t1|Name=Gvermi3353.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=795bp|location=Sequence derived from alignment at ScGOVlb_41:1200215..1201103- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACTCATCCGGAACGATTAGAAGGATGTCATCGTCCGATATTATTCC
AGCTTTTGAAGACCCTCCATCTGCGCACTCTCAAAAAGATATCATCGCCG
ATGGGTATCGCATGATAACTCGAACACTACGTGAGCCTCTTTTCGAACTG
TACTGTGAGGCAGAACTAGATTCATCGCAATTTATTGTACAATTCGATGT
GTTTCCATTCTCAGCTGGGGGGCAACGACTGGCGTTTGAGGGGCGGATGC
TCGAGCGCCTTGAAAACGGGCGGCTCAAAAGCCACATGCCGGTGGTGGTC
AAGCTTCAAATGGCCACGGGTGCCTACTTGTGCCGCACGATGAGCGAAAG
AACTCGCGTGTGCGAAGTGGAGGCAGACAACACGGTGCGGAAACATGAAA
TCACGTCCAGCATTCTTGAAAAGTGGTGCTCGCTTGGAACAAACAAACAG
GTAGATATCTTACCCGCTATCAAGCTTGTTGTGACCAGGGAGTGCACGTT
GGGTAACATTCCGCAGGAAAAATTTCCGGTGCTGCATCACTTGTTCAAGA
AGCTTTCGTTGGACGCCGTGCTGTACAACGGTGCGATTGGCACCGTTGAA
GAATATCTGGATGGGAAGTTCACAAAGTTTCTCAACAATGACGGTGAGCA
CAACCATCAGGTGCGAGCGAATTTTCCGGCTGCGTTTGCACACTGGTCGT
GGGTTGACTCTGGCGGAACGATTATGACCTGGGGATCATGGGGGTGGAGG
AATTCTTCGCGAAGCACAGGTGTAACGGGCTGTGCAACGACCTGA
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