Gvermi3299.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3299.t1
Unique Name	Gvermi3299.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	507

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:955140..956660 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702604.1
Preferred name	ABCH2
PFAMs	AAA_assoc_C,ABC_tran
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02003
KEGG TC	3.A.1
KEGG Module	M00258
GOs	GO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008144,GO:0008150,GO:0009653,GO:0015399,GO:0015405,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0030554,GO:0030587,GO:0031224,GO:0031288,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0043167,GO:0043168,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071944,GO:0090702,GO:0097159,GO:0097367,GO:0098533,GO:0098796,GO:0098797,GO:0099120,GO:1901265,GO:1901363,GO:1902494,GO:1902495,GO:1904949,GO:1990351
Evalue	1.64e-172
EggNOG OGs	COG1132@1\|root,KOG0055@2759\|Eukaryota
Description	ATPase activity, coupled to transmembrane movement of substances
COG category	V
BRITE	ko00000,ko00002,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3299	Gvermi3299	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 955140..956660 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3299.t1.start1	Gvermi3299.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 955140..955142 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3299.t1.CDS1	Gvermi3299.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 955140..956660 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3299.t1.exon1	Gvermi3299.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 955140..956660 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3299.t1.stop1	Gvermi3299.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 956658..956660 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3299.t1	Gvermi3299.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 955140..956660 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:955140..956660+
coding sequence from alignment at ScGOVlb_41:955140..956660+

mRNA sequence

>Gvermi3299.t1 ID=Gvermi3299.t1|Name=Gvermi3299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=507bp
MTTNTPRVDISAPSTVKVPSPRSIISSLKHVSYDVAGVRVVEDVSLDISE
GEIVCILGPSGSGKSTILRMLAGLTRPSEGVALYKGRPFQGPNPGASIVF
QTFALYPWLTVLENVELGLSSASGVSRDDIRARSVTAIDIIGLDGYENAY
PRELSGGMRQRVGFARALAVEPEILCMDEPFSALDVLTAENLRSEVLRLW
QAGDVPTTSVLIVTHGIEEAVSLADRVVILGKDPGHVRNILPINLAHPRD
RKSAVFQEITDLVYTILSEKDYVVSQDDIAVLSRGGYSRYPSETHVLMGP
RTIINSKTEKEPGKTLKLVDSSQPEGFDNNEEVVHKEDSVSRYPQLPGVR
IGSVTGLLSFIADESEDLYRLGQRLQLDIDDLYPLIEAASILGFIEVDEG
DVRLNATGHVFLRASIDERKHMIRVAALSAPEARLVAQIHCLLSQSAKQE
LPEDLIFDTILLKHFSPTKARKQLDIAIEWGRYAELYGYESLTGTLFLDK
GDEVPE*

spliced messenger RNA

>Gvermi3299.t1 ID=Gvermi3299.t1|Name=Gvermi3299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at ScGOVlb_41:955140..956660+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTACTAACACGCCCCGTGTTGATATCAGTGCACCTTCAACTGTGAA
AGTTCCTTCTCCGCGCTCCATTATTTCCTCGCTGAAGCATGTCTCATATG
ATGTGGCTGGTGTGCGTGTTGTGGAGGATGTCAGCTTGGACATCTCAGAA
GGAGAAATCGTTTGTATTCTTGGTCCATCAGGTTCAGGCAAGTCAACCAT
TCTGAGAATGTTGGCTGGTCTTACGCGCCCTTCTGAAGGAGTCGCTCTGT
ACAAAGGACGCCCTTTCCAGGGTCCCAATCCAGGCGCCTCAATTGTATTC
CAGACATTTGCCCTCTATCCATGGCTCACTGTCCTGGAGAATGTCGAGCT
TGGTCTGTCCAGCGCCTCTGGGGTTAGTCGCGACGATATTCGAGCACGTT
CTGTGACGGCCATTGATATCATAGGCTTAGACGGGTATGAAAACGCGTAC
CCCCGTGAGCTTTCAGGCGGCATGCGTCAACGCGTAGGCTTTGCAAGGGC
TCTCGCAGTCGAGCCAGAGATTCTATGCATGGATGAACCTTTCTCGGCGC
TCGACGTCCTAACAGCTGAGAACTTGCGTTCAGAAGTGTTGCGTCTGTGG
CAAGCAGGAGATGTGCCTACCACATCAGTGCTAATTGTCACGCATGGAAT
CGAGGAGGCAGTCAGTCTGGCGGACAGAGTGGTCATTCTCGGCAAAGATC
CAGGTCACGTCCGTAACATCTTACCCATCAATCTCGCTCACCCACGGGAC
CGAAAGAGTGCAGTCTTTCAAGAGATTACCGATCTTGTATACACTATTCT
CTCAGAAAAGGATTACGTGGTATCACAGGACGATATCGCTGTGCTCAGCC
GCGGCGGGTATTCTCGATATCCATCCGAAACGCACGTTTTGATGGGTCCC
AGAACTATTATCAATTCAAAAACAGAAAAAGAGCCAGGAAAAACTCTTAA
GCTCGTGGATTCCAGTCAGCCAGAAGGCTTTGATAACAATGAAGAGGTTG
TGCACAAAGAAGATTCTGTTTCGCGATACCCGCAATTACCAGGCGTACGG
ATTGGAAGCGTAACGGGACTTCTGTCTTTTATTGCAGATGAAAGCGAGGA
TCTTTATCGCTTGGGGCAAAGACTGCAGCTTGACATTGATGATCTCTATC
CCCTAATTGAAGCAGCCAGTATTTTGGGCTTCATTGAGGTCGACGAAGGT
GATGTTCGTTTGAACGCTACTGGTCATGTCTTTCTGCGTGCATCCATCGA
TGAGCGTAAGCACATGATTCGTGTGGCTGCGCTCTCTGCACCAGAAGCTC
GTTTAGTAGCACAGATACACTGCCTGCTGTCGCAATCTGCCAAACAAGAA
CTGCCGGAGGATCTGATCTTTGACACAATTCTTTTGAAGCACTTCTCTCC
AACCAAGGCGAGAAAGCAGCTTGATATTGCAATTGAGTGGGGACGTTATG
CGGAGTTGTATGGATATGAATCCTTGACAGGGACCCTCTTCCTAGACAAG
GGGGACGAAGTGCCTGAATGA

protein sequence of Gvermi3299.t1

>Gvermi3299.t1 ID=Gvermi3299.t1|Name=Gvermi3299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=507bp
MTTNTPRVDISAPSTVKVPSPRSIISSLKHVSYDVAGVRVVEDVSLDISE
GEIVCILGPSGSGKSTILRMLAGLTRPSEGVALYKGRPFQGPNPGASIVF
QTFALYPWLTVLENVELGLSSASGVSRDDIRARSVTAIDIIGLDGYENAY
PRELSGGMRQRVGFARALAVEPEILCMDEPFSALDVLTAENLRSEVLRLW
QAGDVPTTSVLIVTHGIEEAVSLADRVVILGKDPGHVRNILPINLAHPRD
RKSAVFQEITDLVYTILSEKDYVVSQDDIAVLSRGGYSRYPSETHVLMGP
RTIINSKTEKEPGKTLKLVDSSQPEGFDNNEEVVHKEDSVSRYPQLPGVR
IGSVTGLLSFIADESEDLYRLGQRLQLDIDDLYPLIEAASILGFIEVDEG
DVRLNATGHVFLRASIDERKHMIRVAALSAPEARLVAQIHCLLSQSAKQE
LPEDLIFDTILLKHFSPTKARKQLDIAIEWGRYAELYGYESLTGTLFLDK
GDEVPE*

mRNA from alignment at ScGOVlb_41:955140..956660+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3299.t1 ID=Gvermi3299.t1|Name=Gvermi3299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at ScGOVlb_41:955140..956660+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTACTAACACGCCCCGTGTTGATATCAGTGCACCTTCAACTGTGAA
AGTTCCTTCTCCGCGCTCCATTATTTCCTCGCTGAAGCATGTCTCATATG
ATGTGGCTGGTGTGCGTGTTGTGGAGGATGTCAGCTTGGACATCTCAGAA
GGAGAAATCGTTTGTATTCTTGGTCCATCAGGTTCAGGCAAGTCAACCAT
TCTGAGAATGTTGGCTGGTCTTACGCGCCCTTCTGAAGGAGTCGCTCTGT
ACAAAGGACGCCCTTTCCAGGGTCCCAATCCAGGCGCCTCAATTGTATTC
CAGACATTTGCCCTCTATCCATGGCTCACTGTCCTGGAGAATGTCGAGCT
TGGTCTGTCCAGCGCCTCTGGGGTTAGTCGCGACGATATTCGAGCACGTT
CTGTGACGGCCATTGATATCATAGGCTTAGACGGGTATGAAAACGCGTAC
CCCCGTGAGCTTTCAGGCGGCATGCGTCAACGCGTAGGCTTTGCAAGGGC
TCTCGCAGTCGAGCCAGAGATTCTATGCATGGATGAACCTTTCTCGGCGC
TCGACGTCCTAACAGCTGAGAACTTGCGTTCAGAAGTGTTGCGTCTGTGG
CAAGCAGGAGATGTGCCTACCACATCAGTGCTAATTGTCACGCATGGAAT
CGAGGAGGCAGTCAGTCTGGCGGACAGAGTGGTCATTCTCGGCAAAGATC
CAGGTCACGTCCGTAACATCTTACCCATCAATCTCGCTCACCCACGGGAC
CGAAAGAGTGCAGTCTTTCAAGAGATTACCGATCTTGTATACACTATTCT
CTCAGAAAAGGATTACGTGGTATCACAGGACGATATCGCTGTGCTCAGCC
GCGGCGGGTATTCTCGATATCCATCCGAAACGCACGTTTTGATGGGTCCC
AGAACTATTATCAATTCAAAAACAGAAAAAGAGCCAGGAAAAACTCTTAA
GCTCGTGGATTCCAGTCAGCCAGAAGGCTTTGATAACAATGAAGAGGTTG
TGCACAAAGAAGATTCTGTTTCGCGATACCCGCAATTACCAGGCGTACGG
ATTGGAAGCGTAACGGGACTTCTGTCTTTTATTGCAGATGAAAGCGAGGA
TCTTTATCGCTTGGGGCAAAGACTGCAGCTTGACATTGATGATCTCTATC
CCCTAATTGAAGCAGCCAGTATTTTGGGCTTCATTGAGGTCGACGAAGGT
GATGTTCGTTTGAACGCTACTGGTCATGTCTTTCTGCGTGCATCCATCGA
TGAGCGTAAGCACATGATTCGTGTGGCTGCGCTCTCTGCACCAGAAGCTC
GTTTAGTAGCACAGATACACTGCCTGCTGTCGCAATCTGCCAAACAAGAA
CTGCCGGAGGATCTGATCTTTGACACAATTCTTTTGAAGCACTTCTCTCC
AACCAAGGCGAGAAAGCAGCTTGATATTGCAATTGAGTGGGGACGTTATG
CGGAGTTGTATGGATATGAATCCTTGACAGGGACCCTCTTCCTAGACAAG
GGGGACGAAGTGCCTGAATGA

Coding sequence (CDS) from alignment at ScGOVlb_41:955140..956660+

>Gvermi3299.t1 ID=Gvermi3299.t1|Name=Gvermi3299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1521bp|location=Sequence derived from alignment at ScGOVlb_41:955140..956660+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTACTAACACGCCCCGTGTTGATATCAGTGCACCTTCAACTGTGAA
AGTTCCTTCTCCGCGCTCCATTATTTCCTCGCTGAAGCATGTCTCATATG
ATGTGGCTGGTGTGCGTGTTGTGGAGGATGTCAGCTTGGACATCTCAGAA
GGAGAAATCGTTTGTATTCTTGGTCCATCAGGTTCAGGCAAGTCAACCAT
TCTGAGAATGTTGGCTGGTCTTACGCGCCCTTCTGAAGGAGTCGCTCTGT
ACAAAGGACGCCCTTTCCAGGGTCCCAATCCAGGCGCCTCAATTGTATTC
CAGACATTTGCCCTCTATCCATGGCTCACTGTCCTGGAGAATGTCGAGCT
TGGTCTGTCCAGCGCCTCTGGGGTTAGTCGCGACGATATTCGAGCACGTT
CTGTGACGGCCATTGATATCATAGGCTTAGACGGGTATGAAAACGCGTAC
CCCCGTGAGCTTTCAGGCGGCATGCGTCAACGCGTAGGCTTTGCAAGGGC
TCTCGCAGTCGAGCCAGAGATTCTATGCATGGATGAACCTTTCTCGGCGC
TCGACGTCCTAACAGCTGAGAACTTGCGTTCAGAAGTGTTGCGTCTGTGG
CAAGCAGGAGATGTGCCTACCACATCAGTGCTAATTGTCACGCATGGAAT
CGAGGAGGCAGTCAGTCTGGCGGACAGAGTGGTCATTCTCGGCAAAGATC
CAGGTCACGTCCGTAACATCTTACCCATCAATCTCGCTCACCCACGGGAC
CGAAAGAGTGCAGTCTTTCAAGAGATTACCGATCTTGTATACACTATTCT
CTCAGAAAAGGATTACGTGGTATCACAGGACGATATCGCTGTGCTCAGCC
GCGGCGGGTATTCTCGATATCCATCCGAAACGCACGTTTTGATGGGTCCC
AGAACTATTATCAATTCAAAAACAGAAAAAGAGCCAGGAAAAACTCTTAA
GCTCGTGGATTCCAGTCAGCCAGAAGGCTTTGATAACAATGAAGAGGTTG
TGCACAAAGAAGATTCTGTTTCGCGATACCCGCAATTACCAGGCGTACGG
ATTGGAAGCGTAACGGGACTTCTGTCTTTTATTGCAGATGAAAGCGAGGA
TCTTTATCGCTTGGGGCAAAGACTGCAGCTTGACATTGATGATCTCTATC
CCCTAATTGAAGCAGCCAGTATTTTGGGCTTCATTGAGGTCGACGAAGGT
GATGTTCGTTTGAACGCTACTGGTCATGTCTTTCTGCGTGCATCCATCGA
TGAGCGTAAGCACATGATTCGTGTGGCTGCGCTCTCTGCACCAGAAGCTC
GTTTAGTAGCACAGATACACTGCCTGCTGTCGCAATCTGCCAAACAAGAA
CTGCCGGAGGATCTGATCTTTGACACAATTCTTTTGAAGCACTTCTCTCC
AACCAAGGCGAGAAAGCAGCTTGATATTGCAATTGAGTGGGGACGTTATG
CGGAGTTGTATGGATATGAATCCTTGACAGGGACCCTCTTCCTAGACAAG
GGGGACGAAGTGCCTGAATGA