Gvermi3299.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3299.t1
Unique NameGvermi3299.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length507
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:955140..956660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702604.1
Preferred nameABCH2
PFAMsAAA_assoc_C,ABC_tran
Max annot lvl2759|Eukaryota
KEGG koko:K02003
KEGG TC3.A.1
KEGG ModuleM00258
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0008144,GO:0008150,GO:0009653,GO:0015399,GO:0015405,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022804,GO:0022857,GO:0030554,GO:0030587,GO:0031224,GO:0031288,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0035639,GO:0036094,GO:0042623,GO:0042626,GO:0043167,GO:0043168,GO:0043190,GO:0043492,GO:0044425,GO:0044459,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071944,GO:0090702,GO:0097159,GO:0097367,GO:0098533,GO:0098796,GO:0098797,GO:0099120,GO:1901265,GO:1901363,GO:1902494,GO:1902495,GO:1904949,GO:1990351
Evalue1.64e-172
EggNOG OGsCOG1132@1|root,KOG0055@2759|Eukaryota
DescriptionATPase activity, coupled to transmembrane movement of substances
COG categoryV
BRITEko00000,ko00002,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3299Gvermi3299Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 955140..956660 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3299.t1.start1Gvermi3299.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 955140..955142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3299.t1.CDS1Gvermi3299.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 955140..956660 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3299.t1.exon1Gvermi3299.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 955140..956660 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3299.t1.stop1Gvermi3299.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 956658..956660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3299.t1Gvermi3299.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 955140..956660 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3299.t1 ID=Gvermi3299.t1|Name=Gvermi3299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=507bp
MTTNTPRVDISAPSTVKVPSPRSIISSLKHVSYDVAGVRVVEDVSLDISE
GEIVCILGPSGSGKSTILRMLAGLTRPSEGVALYKGRPFQGPNPGASIVF
QTFALYPWLTVLENVELGLSSASGVSRDDIRARSVTAIDIIGLDGYENAY
PRELSGGMRQRVGFARALAVEPEILCMDEPFSALDVLTAENLRSEVLRLW
QAGDVPTTSVLIVTHGIEEAVSLADRVVILGKDPGHVRNILPINLAHPRD
RKSAVFQEITDLVYTILSEKDYVVSQDDIAVLSRGGYSRYPSETHVLMGP
RTIINSKTEKEPGKTLKLVDSSQPEGFDNNEEVVHKEDSVSRYPQLPGVR
IGSVTGLLSFIADESEDLYRLGQRLQLDIDDLYPLIEAASILGFIEVDEG
DVRLNATGHVFLRASIDERKHMIRVAALSAPEARLVAQIHCLLSQSAKQE
LPEDLIFDTILLKHFSPTKARKQLDIAIEWGRYAELYGYESLTGTLFLDK
GDEVPE*
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spliced messenger RNA

>Gvermi3299.t1 ID=Gvermi3299.t1|Name=Gvermi3299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at ScGOVlb_41:955140..956660+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTACTAACACGCCCCGTGTTGATATCAGTGCACCTTCAACTGTGAA
AGTTCCTTCTCCGCGCTCCATTATTTCCTCGCTGAAGCATGTCTCATATG
ATGTGGCTGGTGTGCGTGTTGTGGAGGATGTCAGCTTGGACATCTCAGAA
GGAGAAATCGTTTGTATTCTTGGTCCATCAGGTTCAGGCAAGTCAACCAT
TCTGAGAATGTTGGCTGGTCTTACGCGCCCTTCTGAAGGAGTCGCTCTGT
ACAAAGGACGCCCTTTCCAGGGTCCCAATCCAGGCGCCTCAATTGTATTC
CAGACATTTGCCCTCTATCCATGGCTCACTGTCCTGGAGAATGTCGAGCT
TGGTCTGTCCAGCGCCTCTGGGGTTAGTCGCGACGATATTCGAGCACGTT
CTGTGACGGCCATTGATATCATAGGCTTAGACGGGTATGAAAACGCGTAC
CCCCGTGAGCTTTCAGGCGGCATGCGTCAACGCGTAGGCTTTGCAAGGGC
TCTCGCAGTCGAGCCAGAGATTCTATGCATGGATGAACCTTTCTCGGCGC
TCGACGTCCTAACAGCTGAGAACTTGCGTTCAGAAGTGTTGCGTCTGTGG
CAAGCAGGAGATGTGCCTACCACATCAGTGCTAATTGTCACGCATGGAAT
CGAGGAGGCAGTCAGTCTGGCGGACAGAGTGGTCATTCTCGGCAAAGATC
CAGGTCACGTCCGTAACATCTTACCCATCAATCTCGCTCACCCACGGGAC
CGAAAGAGTGCAGTCTTTCAAGAGATTACCGATCTTGTATACACTATTCT
CTCAGAAAAGGATTACGTGGTATCACAGGACGATATCGCTGTGCTCAGCC
GCGGCGGGTATTCTCGATATCCATCCGAAACGCACGTTTTGATGGGTCCC
AGAACTATTATCAATTCAAAAACAGAAAAAGAGCCAGGAAAAACTCTTAA
GCTCGTGGATTCCAGTCAGCCAGAAGGCTTTGATAACAATGAAGAGGTTG
TGCACAAAGAAGATTCTGTTTCGCGATACCCGCAATTACCAGGCGTACGG
ATTGGAAGCGTAACGGGACTTCTGTCTTTTATTGCAGATGAAAGCGAGGA
TCTTTATCGCTTGGGGCAAAGACTGCAGCTTGACATTGATGATCTCTATC
CCCTAATTGAAGCAGCCAGTATTTTGGGCTTCATTGAGGTCGACGAAGGT
GATGTTCGTTTGAACGCTACTGGTCATGTCTTTCTGCGTGCATCCATCGA
TGAGCGTAAGCACATGATTCGTGTGGCTGCGCTCTCTGCACCAGAAGCTC
GTTTAGTAGCACAGATACACTGCCTGCTGTCGCAATCTGCCAAACAAGAA
CTGCCGGAGGATCTGATCTTTGACACAATTCTTTTGAAGCACTTCTCTCC
AACCAAGGCGAGAAAGCAGCTTGATATTGCAATTGAGTGGGGACGTTATG
CGGAGTTGTATGGATATGAATCCTTGACAGGGACCCTCTTCCTAGACAAG
GGGGACGAAGTGCCTGAATGA
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protein sequence of Gvermi3299.t1

>Gvermi3299.t1 ID=Gvermi3299.t1|Name=Gvermi3299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=507bp
MTTNTPRVDISAPSTVKVPSPRSIISSLKHVSYDVAGVRVVEDVSLDISE
GEIVCILGPSGSGKSTILRMLAGLTRPSEGVALYKGRPFQGPNPGASIVF
QTFALYPWLTVLENVELGLSSASGVSRDDIRARSVTAIDIIGLDGYENAY
PRELSGGMRQRVGFARALAVEPEILCMDEPFSALDVLTAENLRSEVLRLW
QAGDVPTTSVLIVTHGIEEAVSLADRVVILGKDPGHVRNILPINLAHPRD
RKSAVFQEITDLVYTILSEKDYVVSQDDIAVLSRGGYSRYPSETHVLMGP
RTIINSKTEKEPGKTLKLVDSSQPEGFDNNEEVVHKEDSVSRYPQLPGVR
IGSVTGLLSFIADESEDLYRLGQRLQLDIDDLYPLIEAASILGFIEVDEG
DVRLNATGHVFLRASIDERKHMIRVAALSAPEARLVAQIHCLLSQSAKQE
LPEDLIFDTILLKHFSPTKARKQLDIAIEWGRYAELYGYESLTGTLFLDK
GDEVPE*
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mRNA from alignment at ScGOVlb_41:955140..956660+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3299.t1 ID=Gvermi3299.t1|Name=Gvermi3299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at ScGOVlb_41:955140..956660+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTACTAACACGCCCCGTGTTGATATCAGTGCACCTTCAACTGTGAA
AGTTCCTTCTCCGCGCTCCATTATTTCCTCGCTGAAGCATGTCTCATATG
ATGTGGCTGGTGTGCGTGTTGTGGAGGATGTCAGCTTGGACATCTCAGAA
GGAGAAATCGTTTGTATTCTTGGTCCATCAGGTTCAGGCAAGTCAACCAT
TCTGAGAATGTTGGCTGGTCTTACGCGCCCTTCTGAAGGAGTCGCTCTGT
ACAAAGGACGCCCTTTCCAGGGTCCCAATCCAGGCGCCTCAATTGTATTC
CAGACATTTGCCCTCTATCCATGGCTCACTGTCCTGGAGAATGTCGAGCT
TGGTCTGTCCAGCGCCTCTGGGGTTAGTCGCGACGATATTCGAGCACGTT
CTGTGACGGCCATTGATATCATAGGCTTAGACGGGTATGAAAACGCGTAC
CCCCGTGAGCTTTCAGGCGGCATGCGTCAACGCGTAGGCTTTGCAAGGGC
TCTCGCAGTCGAGCCAGAGATTCTATGCATGGATGAACCTTTCTCGGCGC
TCGACGTCCTAACAGCTGAGAACTTGCGTTCAGAAGTGTTGCGTCTGTGG
CAAGCAGGAGATGTGCCTACCACATCAGTGCTAATTGTCACGCATGGAAT
CGAGGAGGCAGTCAGTCTGGCGGACAGAGTGGTCATTCTCGGCAAAGATC
CAGGTCACGTCCGTAACATCTTACCCATCAATCTCGCTCACCCACGGGAC
CGAAAGAGTGCAGTCTTTCAAGAGATTACCGATCTTGTATACACTATTCT
CTCAGAAAAGGATTACGTGGTATCACAGGACGATATCGCTGTGCTCAGCC
GCGGCGGGTATTCTCGATATCCATCCGAAACGCACGTTTTGATGGGTCCC
AGAACTATTATCAATTCAAAAACAGAAAAAGAGCCAGGAAAAACTCTTAA
GCTCGTGGATTCCAGTCAGCCAGAAGGCTTTGATAACAATGAAGAGGTTG
TGCACAAAGAAGATTCTGTTTCGCGATACCCGCAATTACCAGGCGTACGG
ATTGGAAGCGTAACGGGACTTCTGTCTTTTATTGCAGATGAAAGCGAGGA
TCTTTATCGCTTGGGGCAAAGACTGCAGCTTGACATTGATGATCTCTATC
CCCTAATTGAAGCAGCCAGTATTTTGGGCTTCATTGAGGTCGACGAAGGT
GATGTTCGTTTGAACGCTACTGGTCATGTCTTTCTGCGTGCATCCATCGA
TGAGCGTAAGCACATGATTCGTGTGGCTGCGCTCTCTGCACCAGAAGCTC
GTTTAGTAGCACAGATACACTGCCTGCTGTCGCAATCTGCCAAACAAGAA
CTGCCGGAGGATCTGATCTTTGACACAATTCTTTTGAAGCACTTCTCTCC
AACCAAGGCGAGAAAGCAGCTTGATATTGCAATTGAGTGGGGACGTTATG
CGGAGTTGTATGGATATGAATCCTTGACAGGGACCCTCTTCCTAGACAAG
GGGGACGAAGTGCCTGAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_41:955140..956660+

>Gvermi3299.t1 ID=Gvermi3299.t1|Name=Gvermi3299.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1521bp|location=Sequence derived from alignment at ScGOVlb_41:955140..956660+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTACTAACACGCCCCGTGTTGATATCAGTGCACCTTCAACTGTGAA
AGTTCCTTCTCCGCGCTCCATTATTTCCTCGCTGAAGCATGTCTCATATG
ATGTGGCTGGTGTGCGTGTTGTGGAGGATGTCAGCTTGGACATCTCAGAA
GGAGAAATCGTTTGTATTCTTGGTCCATCAGGTTCAGGCAAGTCAACCAT
TCTGAGAATGTTGGCTGGTCTTACGCGCCCTTCTGAAGGAGTCGCTCTGT
ACAAAGGACGCCCTTTCCAGGGTCCCAATCCAGGCGCCTCAATTGTATTC
CAGACATTTGCCCTCTATCCATGGCTCACTGTCCTGGAGAATGTCGAGCT
TGGTCTGTCCAGCGCCTCTGGGGTTAGTCGCGACGATATTCGAGCACGTT
CTGTGACGGCCATTGATATCATAGGCTTAGACGGGTATGAAAACGCGTAC
CCCCGTGAGCTTTCAGGCGGCATGCGTCAACGCGTAGGCTTTGCAAGGGC
TCTCGCAGTCGAGCCAGAGATTCTATGCATGGATGAACCTTTCTCGGCGC
TCGACGTCCTAACAGCTGAGAACTTGCGTTCAGAAGTGTTGCGTCTGTGG
CAAGCAGGAGATGTGCCTACCACATCAGTGCTAATTGTCACGCATGGAAT
CGAGGAGGCAGTCAGTCTGGCGGACAGAGTGGTCATTCTCGGCAAAGATC
CAGGTCACGTCCGTAACATCTTACCCATCAATCTCGCTCACCCACGGGAC
CGAAAGAGTGCAGTCTTTCAAGAGATTACCGATCTTGTATACACTATTCT
CTCAGAAAAGGATTACGTGGTATCACAGGACGATATCGCTGTGCTCAGCC
GCGGCGGGTATTCTCGATATCCATCCGAAACGCACGTTTTGATGGGTCCC
AGAACTATTATCAATTCAAAAACAGAAAAAGAGCCAGGAAAAACTCTTAA
GCTCGTGGATTCCAGTCAGCCAGAAGGCTTTGATAACAATGAAGAGGTTG
TGCACAAAGAAGATTCTGTTTCGCGATACCCGCAATTACCAGGCGTACGG
ATTGGAAGCGTAACGGGACTTCTGTCTTTTATTGCAGATGAAAGCGAGGA
TCTTTATCGCTTGGGGCAAAGACTGCAGCTTGACATTGATGATCTCTATC
CCCTAATTGAAGCAGCCAGTATTTTGGGCTTCATTGAGGTCGACGAAGGT
GATGTTCGTTTGAACGCTACTGGTCATGTCTTTCTGCGTGCATCCATCGA
TGAGCGTAAGCACATGATTCGTGTGGCTGCGCTCTCTGCACCAGAAGCTC
GTTTAGTAGCACAGATACACTGCCTGCTGTCGCAATCTGCCAAACAAGAA
CTGCCGGAGGATCTGATCTTTGACACAATTCTTTTGAAGCACTTCTCTCC
AACCAAGGCGAGAAAGCAGCTTGATATTGCAATTGAGTGGGGACGTTATG
CGGAGTTGTATGGATATGAATCCTTGACAGGGACCCTCTTCCTAGACAAG
GGGGACGAAGTGCCTGAATGA
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