Gvermi328.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi328.t1
Unique NameGvermi328.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length799
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_708contigScGOVlb_708:66..2661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi328Gvermi328Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_708 66..2661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi328.t1Gvermi328.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_708 66..2661 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi328.t1.stop1Gvermi328.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_708 66..68 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi328.t1.CDS1Gvermi328.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_708 66..1111 -
Gvermi328.t1.CDS2Gvermi328.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_708 1311..2661 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi328.t1.exon1Gvermi328.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_708 66..1111 -
Gvermi328.t1.exon2Gvermi328.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_708 1311..2661 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi328.t1.intron1Gvermi328.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_708 1112..1310 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi328.t1.start1Gvermi328.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_708 2659..2661 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi328.t1 ID=Gvermi328.t1|Name=Gvermi328.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=799bp
MEMAGNQEIYTDKLMALVISRLMIFHVTRDLFEEKYAKEKYVFGPLDWLY
CQLFPSLLYGKDVFTSVLRIVEGVIASGNLDRGGLLDDTRTLVDQPMYCF
VDEAQILVNKFTTGYFISADKNTDRSLYSATVKGFNTITKETGAHWNPVM
SGTGLSITAIKNEGTSVVAKTGGKETYIFHEFKHLDVEGVKAYMGRFIDL
TRFDPNLVNHVAKWLVGRPRWTAFFMNIWMLREKFRAVPKEGLFYDELEA
SMGAAGIPKKKQKPAVTLEEYNQEMQLEIQRFIELMTLEGSATSSRASKS
FNSTGTAINALIRMERKIVEGGNVLSFHGKFLDALAVYLSTGKDCVLRSD
DDDGAVKSDGKSTTLELSRELINVGICSVDIKETKKVDVFNAVINEPIMV
EAAFQFFLKNGTLRSSLLQQFSKKNAASSAFENLSLILAYVNLEALIKRS
VDYICRGTRRGDGVRGIAKYFTDFNMGKTAYGVLIENCENANETLQHLEN
AIRSPFPASVPPICNPDQSFGPDGFLLMRKSNDVTQLLPVIFQMKFNHES
YEDQRKVNETLIPELMFRTKVKLDVEKGERQTYEKAIAQKYYIERDPDFI
RRWIWVASKLFDLNLPNLNATLGIWPDPLEFTDGFTVAAEAVQAASEYKK
VSQKLKELRKENEKRRNDHMENTGESATRSELRKWDRKAQQESKKEVVDS
PTFNPDVVDKVANLWRSRRRPVVKISVQYTPPRNPPPLANLEHFSTIPPE
TRSEDDKGEKYDLLIYFDSNQFADMLPPSEKVKFDGIIEGDMARGALG*
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spliced messenger RNA

>Gvermi328.t1 ID=Gvermi328.t1|Name=Gvermi328.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2397bp|location=Sequence derived from alignment at ScGOVlb_708:66..2661- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATGGCGGGAAACCAGGAAATCTACACCGACAAGCTTATGGCACT
TGTTATCTCGCGGTTGATGATCTTTCACGTCACAAGGGACCTTTTCGAGG
AAAAGTACGCAAAAGAAAAGTATGTTTTCGGACCCCTGGACTGGTTGTAT
TGCCAGTTGTTCCCTTCACTACTTTATGGCAAAGATGTCTTTACGTCGGT
CCTGCGTATCGTGGAAGGAGTCATTGCCTCGGGAAACCTCGATCGAGGGG
GACTCCTGGATGACACTAGAACCCTTGTCGATCAACCCATGTACTGCTTC
GTGGACGAGGCTCAGATTCTCGTGAACAAGTTCACAACGGGTTACTTCAT
TTCGGCGGACAAGAATACGGATCGATCGTTGTATTCCGCGACCGTGAAAG
GCTTTAACACTATTACTAAAGAAACAGGCGCGCATTGGAACCCTGTGATG
TCGGGGACCGGACTGTCGATCACGGCGATCAAAAACGAGGGCACCAGTGT
AGTCGCGAAAACGGGGGGCAAGGAGACGTACATCTTCCACGAGTTCAAAC
ACCTGGATGTCGAAGGTGTCAAGGCGTACATGGGACGTTTCATAGACCTC
ACCCGGTTTGATCCCAACCTTGTCAATCATGTCGCAAAGTGGTTGGTGGG
GCGGCCCAGGTGGACTGCATTCTTCATGAATATATGGATGCTTCGTGAAA
AATTCCGTGCGGTACCTAAGGAAGGCTTGTTCTATGACGAGTTGGAGGCC
AGCATGGGGGCCGCGGGGATTCCCAAAAAGAAACAAAAGCCGGCCGTCAC
GCTAGAAGAGTACAATCAAGAGATGCAATTGGAGATCCAGCGTTTCATCG
AGTTGATGACTTTGGAAGGCTCGGCAACATCAAGTCGTGCTTCCAAATCA
TTTAATAGCACGGGGACGGCAATTAACGCACTGATACGAATGGAGAGAAA
GATCGTTGAGGGCGGTAATGTGCTGTCGTTCCACGGGAAGTTCCTTGACG
CACTAGCAGTTTACTTGTCAACCGGCAAGGATTGTGTCTTGAGAAGTGAC
GACGATGATGGTGCCGTGAAGAGTGACGGCAAAAGCACCACTCTGGAATT
GAGCCGGGAACTGATCAATGTCGGGATCTGTTCTGTGGATATCAAAGAGA
CCAAGAAGGTGGACGTATTCAATGCGGTCATTAATGAACCAATCATGGTC
GAAGCCGCATTCCAGTTTTTCTTGAAGAACGGTACTCTTCGGAGCTCTCT
TCTACAACAATTTTCTAAAAAGAACGCGGCTTCTTCCGCGTTTGAGAATC
TGTCTTTGATACTCGCATACGTCAACCTGGAAGCATTGATTAAAAGGTCA
GTGGATTATATTTGTAGAGGGACCAGAAGGGGGGATGGTGTACGGGGAAT
CGCAAAGTATTTCACCGACTTTAATATGGGTAAAACGGCGTACGGAGTCT
TGATCGAGAATTGCGAAAATGCAAACGAGACCCTTCAACACTTGGAGAAT
GCTATCCGGTCGCCTTTCCCAGCGAGCGTCCCTCCTATCTGTAACCCCGA
CCAGTCTTTCGGGCCTGATGGGTTTCTTCTCATGCGTAAGAGCAATGACG
TGACCCAACTTCTCCCGGTTATCTTCCAAATGAAGTTCAACCATGAGAGC
TATGAAGATCAAAGGAAGGTCAATGAAACGCTCATCCCGGAACTGATGTT
TCGCACCAAGGTTAAGCTTGACGTTGAAAAGGGAGAGAGACAAACGTACG
AGAAAGCAATTGCACAAAAGTACTACATCGAGCGTGATCCGGACTTCATA
AGACGCTGGATTTGGGTGGCGAGTAAACTGTTTGACTTGAACTTGCCGAA
TTTAAATGCAACACTGGGAATTTGGCCGGATCCCCTCGAATTCACGGATG
GTTTCACTGTTGCAGCAGAAGCCGTGCAAGCCGCATCGGAATACAAAAAG
GTTTCCCAAAAACTCAAAGAACTCAGGAAAGAAAACGAAAAGAGAAGAAA
TGACCACATGGAAAATACCGGGGAATCCGCTACGAGGAGTGAATTGAGAA
AATGGGATAGGAAGGCCCAGCAAGAGTCAAAGAAGGAAGTGGTTGACTCA
CCTACTTTCAACCCCGATGTTGTGGATAAAGTGGCAAATCTCTGGAGATC
GCGAAGGAGGCCCGTGGTGAAGATATCGGTGCAATACACGCCCCCTAGAA
ACCCACCCCCTTTAGCAAATCTCGAACACTTTTCAACGATCCCCCCGGAA
ACTAGGAGTGAAGACGATAAAGGCGAGAAGTACGACCTTCTTATTTACTT
TGATTCGAATCAGTTCGCGGACATGCTTCCACCGAGTGAGAAGGTCAAGT
TCGATGGCATTATTGAGGGAGATATGGCTCGCGGCGCACTGGGATAA
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protein sequence of Gvermi328.t1

>Gvermi328.t1 ID=Gvermi328.t1|Name=Gvermi328.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=799bp
MEMAGNQEIYTDKLMALVISRLMIFHVTRDLFEEKYAKEKYVFGPLDWLY
CQLFPSLLYGKDVFTSVLRIVEGVIASGNLDRGGLLDDTRTLVDQPMYCF
VDEAQILVNKFTTGYFISADKNTDRSLYSATVKGFNTITKETGAHWNPVM
SGTGLSITAIKNEGTSVVAKTGGKETYIFHEFKHLDVEGVKAYMGRFIDL
TRFDPNLVNHVAKWLVGRPRWTAFFMNIWMLREKFRAVPKEGLFYDELEA
SMGAAGIPKKKQKPAVTLEEYNQEMQLEIQRFIELMTLEGSATSSRASKS
FNSTGTAINALIRMERKIVEGGNVLSFHGKFLDALAVYLSTGKDCVLRSD
DDDGAVKSDGKSTTLELSRELINVGICSVDIKETKKVDVFNAVINEPIMV
EAAFQFFLKNGTLRSSLLQQFSKKNAASSAFENLSLILAYVNLEALIKRS
VDYICRGTRRGDGVRGIAKYFTDFNMGKTAYGVLIENCENANETLQHLEN
AIRSPFPASVPPICNPDQSFGPDGFLLMRKSNDVTQLLPVIFQMKFNHES
YEDQRKVNETLIPELMFRTKVKLDVEKGERQTYEKAIAQKYYIERDPDFI
RRWIWVASKLFDLNLPNLNATLGIWPDPLEFTDGFTVAAEAVQAASEYKK
VSQKLKELRKENEKRRNDHMENTGESATRSELRKWDRKAQQESKKEVVDS
PTFNPDVVDKVANLWRSRRRPVVKISVQYTPPRNPPPLANLEHFSTIPPE
TRSEDDKGEKYDLLIYFDSNQFADMLPPSEKVKFDGIIEGDMARGALG*
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mRNA from alignment at ScGOVlb_708:66..2661-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi328.t1 ID=Gvermi328.t1|Name=Gvermi328.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2596bp|location=Sequence derived from alignment at ScGOVlb_708:66..2661- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAATGGCGGGAAACCAGGAAATCTACACCGACAAGCTTATGGCACT
TGTTATCTCGCGGTTGATGATCTTTCACGTCACAAGGGACCTTTTCGAGG
AAAAGTACGCAAAAGAAAAGTATGTTTTCGGACCCCTGGACTGGTTGTAT
TGCCAGTTGTTCCCTTCACTACTTTATGGCAAAGATGTCTTTACGTCGGT
CCTGCGTATCGTGGAAGGAGTCATTGCCTCGGGAAACCTCGATCGAGGGG
GACTCCTGGATGACACTAGAACCCTTGTCGATCAACCCATGTACTGCTTC
GTGGACGAGGCTCAGATTCTCGTGAACAAGTTCACAACGGGTTACTTCAT
TTCGGCGGACAAGAATACGGATCGATCGTTGTATTCCGCGACCGTGAAAG
GCTTTAACACTATTACTAAAGAAACAGGCGCGCATTGGAACCCTGTGATG
TCGGGGACCGGACTGTCGATCACGGCGATCAAAAACGAGGGCACCAGTGT
AGTCGCGAAAACGGGGGGCAAGGAGACGTACATCTTCCACGAGTTCAAAC
ACCTGGATGTCGAAGGTGTCAAGGCGTACATGGGACGTTTCATAGACCTC
ACCCGGTTTGATCCCAACCTTGTCAATCATGTCGCAAAGTGGTTGGTGGG
GCGGCCCAGGTGGACTGCATTCTTCATGAATATATGGATGCTTCGTGAAA
AATTCCGTGCGGTACCTAAGGAAGGCTTGTTCTATGACGAGTTGGAGGCC
AGCATGGGGGCCGCGGGGATTCCCAAAAAGAAACAAAAGCCGGCCGTCAC
GCTAGAAGAGTACAATCAAGAGATGCAATTGGAGATCCAGCGTTTCATCG
AGTTGATGACTTTGGAAGGCTCGGCAACATCAAGTCGTGCTTCCAAATCA
TTTAATAGCACGGGGACGGCAATTAACGCACTGATACGAATGGAGAGAAA
GATCGTTGAGGGCGGTAATGTGCTGTCGTTCCACGGGAAGTTCCTTGACG
CACTAGCAGTTTACTTGTCAACCGGCAAGGATTGTGTCTTGAGAAGTGAC
GACGATGATGGTGCCGTGAAGAGTGACGGCAAAAGCACCACTCTGGAATT
GAGCCGGGAACTGATCAATGTCGGGATCTGTTCTGTGGATATCAAAGAGA
CCAAGAAGGTGGACGTATTCAATGCGGTCATTAATGAACCAATCATGGTC
GAAGCCGCATTCCAGTTTTTCTTGAAGAACGGTACTCTTCGGAGCTCTCT
TCTACAACAATTTTCTAAAAAGAACGCGGCTTCTTCCGCGTTTGAGAATC
TGTCTTTGATACTCGCATACGTCAACCTGGAAGCATTGATTAAAAGGTCA
GGTAAGTTGAAATCGAAAAAAGTGCAAATCGCTCTCATGTGGCGTTTTAT
CGGGCGAGTAGGCAATATTTGGTAGTCATTATGTACTAGATTATTTGGAA
TAAATAAGCAGTGGCCCTAGCGGTCTTGCCCATACAAGCCTGAAAGCGAC
TCATCCCGCGCTTTTTTGCAAAACTAACTTTTTGGTTTCGAACTGTGTAG
TGGATTATATTTGTAGAGGGACCAGAAGGGGGGATGGTGTACGGGGAATC
GCAAAGTATTTCACCGACTTTAATATGGGTAAAACGGCGTACGGAGTCTT
GATCGAGAATTGCGAAAATGCAAACGAGACCCTTCAACACTTGGAGAATG
CTATCCGGTCGCCTTTCCCAGCGAGCGTCCCTCCTATCTGTAACCCCGAC
CAGTCTTTCGGGCCTGATGGGTTTCTTCTCATGCGTAAGAGCAATGACGT
GACCCAACTTCTCCCGGTTATCTTCCAAATGAAGTTCAACCATGAGAGCT
ATGAAGATCAAAGGAAGGTCAATGAAACGCTCATCCCGGAACTGATGTTT
CGCACCAAGGTTAAGCTTGACGTTGAAAAGGGAGAGAGACAAACGTACGA
GAAAGCAATTGCACAAAAGTACTACATCGAGCGTGATCCGGACTTCATAA
GACGCTGGATTTGGGTGGCGAGTAAACTGTTTGACTTGAACTTGCCGAAT
TTAAATGCAACACTGGGAATTTGGCCGGATCCCCTCGAATTCACGGATGG
TTTCACTGTTGCAGCAGAAGCCGTGCAAGCCGCATCGGAATACAAAAAGG
TTTCCCAAAAACTCAAAGAACTCAGGAAAGAAAACGAAAAGAGAAGAAAT
GACCACATGGAAAATACCGGGGAATCCGCTACGAGGAGTGAATTGAGAAA
ATGGGATAGGAAGGCCCAGCAAGAGTCAAAGAAGGAAGTGGTTGACTCAC
CTACTTTCAACCCCGATGTTGTGGATAAAGTGGCAAATCTCTGGAGATCG
CGAAGGAGGCCCGTGGTGAAGATATCGGTGCAATACACGCCCCCTAGAAA
CCCACCCCCTTTAGCAAATCTCGAACACTTTTCAACGATCCCCCCGGAAA
CTAGGAGTGAAGACGATAAAGGCGAGAAGTACGACCTTCTTATTTACTTT
GATTCGAATCAGTTCGCGGACATGCTTCCACCGAGTGAGAAGGTCAAGTT
CGATGGCATTATTGAGGGAGATATGGCTCGCGGCGCACTGGGATAA
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Coding sequence (CDS) from alignment at ScGOVlb_708:66..2661-

>Gvermi328.t1 ID=Gvermi328.t1|Name=Gvermi328.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2397bp|location=Sequence derived from alignment at ScGOVlb_708:66..2661- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAATGGCGGGAAACCAGGAAATCTACACCGACAAGCTTATGGCACT
TGTTATCTCGCGGTTGATGATCTTTCACGTCACAAGGGACCTTTTCGAGG
AAAAGTACGCAAAAGAAAAGTATGTTTTCGGACCCCTGGACTGGTTGTAT
TGCCAGTTGTTCCCTTCACTACTTTATGGCAAAGATGTCTTTACGTCGGT
CCTGCGTATCGTGGAAGGAGTCATTGCCTCGGGAAACCTCGATCGAGGGG
GACTCCTGGATGACACTAGAACCCTTGTCGATCAACCCATGTACTGCTTC
GTGGACGAGGCTCAGATTCTCGTGAACAAGTTCACAACGGGTTACTTCAT
TTCGGCGGACAAGAATACGGATCGATCGTTGTATTCCGCGACCGTGAAAG
GCTTTAACACTATTACTAAAGAAACAGGCGCGCATTGGAACCCTGTGATG
TCGGGGACCGGACTGTCGATCACGGCGATCAAAAACGAGGGCACCAGTGT
AGTCGCGAAAACGGGGGGCAAGGAGACGTACATCTTCCACGAGTTCAAAC
ACCTGGATGTCGAAGGTGTCAAGGCGTACATGGGACGTTTCATAGACCTC
ACCCGGTTTGATCCCAACCTTGTCAATCATGTCGCAAAGTGGTTGGTGGG
GCGGCCCAGGTGGACTGCATTCTTCATGAATATATGGATGCTTCGTGAAA
AATTCCGTGCGGTACCTAAGGAAGGCTTGTTCTATGACGAGTTGGAGGCC
AGCATGGGGGCCGCGGGGATTCCCAAAAAGAAACAAAAGCCGGCCGTCAC
GCTAGAAGAGTACAATCAAGAGATGCAATTGGAGATCCAGCGTTTCATCG
AGTTGATGACTTTGGAAGGCTCGGCAACATCAAGTCGTGCTTCCAAATCA
TTTAATAGCACGGGGACGGCAATTAACGCACTGATACGAATGGAGAGAAA
GATCGTTGAGGGCGGTAATGTGCTGTCGTTCCACGGGAAGTTCCTTGACG
CACTAGCAGTTTACTTGTCAACCGGCAAGGATTGTGTCTTGAGAAGTGAC
GACGATGATGGTGCCGTGAAGAGTGACGGCAAAAGCACCACTCTGGAATT
GAGCCGGGAACTGATCAATGTCGGGATCTGTTCTGTGGATATCAAAGAGA
CCAAGAAGGTGGACGTATTCAATGCGGTCATTAATGAACCAATCATGGTC
GAAGCCGCATTCCAGTTTTTCTTGAAGAACGGTACTCTTCGGAGCTCTCT
TCTACAACAATTTTCTAAAAAGAACGCGGCTTCTTCCGCGTTTGAGAATC
TGTCTTTGATACTCGCATACGTCAACCTGGAAGCATTGATTAAAAGGTCA
GTGGATTATATTTGTAGAGGGACCAGAAGGGGGGATGGTGTACGGGGAAT
CGCAAAGTATTTCACCGACTTTAATATGGGTAAAACGGCGTACGGAGTCT
TGATCGAGAATTGCGAAAATGCAAACGAGACCCTTCAACACTTGGAGAAT
GCTATCCGGTCGCCTTTCCCAGCGAGCGTCCCTCCTATCTGTAACCCCGA
CCAGTCTTTCGGGCCTGATGGGTTTCTTCTCATGCGTAAGAGCAATGACG
TGACCCAACTTCTCCCGGTTATCTTCCAAATGAAGTTCAACCATGAGAGC
TATGAAGATCAAAGGAAGGTCAATGAAACGCTCATCCCGGAACTGATGTT
TCGCACCAAGGTTAAGCTTGACGTTGAAAAGGGAGAGAGACAAACGTACG
AGAAAGCAATTGCACAAAAGTACTACATCGAGCGTGATCCGGACTTCATA
AGACGCTGGATTTGGGTGGCGAGTAAACTGTTTGACTTGAACTTGCCGAA
TTTAAATGCAACACTGGGAATTTGGCCGGATCCCCTCGAATTCACGGATG
GTTTCACTGTTGCAGCAGAAGCCGTGCAAGCCGCATCGGAATACAAAAAG
GTTTCCCAAAAACTCAAAGAACTCAGGAAAGAAAACGAAAAGAGAAGAAA
TGACCACATGGAAAATACCGGGGAATCCGCTACGAGGAGTGAATTGAGAA
AATGGGATAGGAAGGCCCAGCAAGAGTCAAAGAAGGAAGTGGTTGACTCA
CCTACTTTCAACCCCGATGTTGTGGATAAAGTGGCAAATCTCTGGAGATC
GCGAAGGAGGCCCGTGGTGAAGATATCGGTGCAATACACGCCCCCTAGAA
ACCCACCCCCTTTAGCAAATCTCGAACACTTTTCAACGATCCCCCCGGAA
ACTAGGAGTGAAGACGATAAAGGCGAGAAGTACGACCTTCTTATTTACTT
TGATTCGAATCAGTTCGCGGACATGCTTCCACCGAGTGAGAAGGTCAAGT
TCGATGGCATTATTGAGGGAGATATGGCTCGCGGCGCACTGGGATAA
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