Gvermi3267.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3267.t2
Unique Name	Gvermi3267.t2
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	518

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:831349..832902 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	158500.BV97_01170
Preferred name	pcpB
PFAMs	FAD_binding_3
Max annot lvl	204457\|Sphingomonadales
KEGG rclass	RC00236,RC01932
KEGG ko	ko:K03391,ko:K05712
KEGG Reaction	R03982,R06786,R06787,R07779
KEGG Pathway	ko00360,ko00361,ko00364,ko01100,ko01120,ko01220,map00360,map00361,map00364,map01100,map01120,map01220
KEGG Module	M00545
Evalue	1.5e-125
EggNOG OGs	COG0654@1\|root,COG0654@2\|Bacteria,1MUN4@1224\|Proteobacteria,2TQT8@28211\|Alphaproteobacteria,2K23S@204457\|Sphingomonadales
EC	1.14.13.127,1.14.13.50
Description	FAD binding domain
COG category	CH
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3267	Gvermi3267	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 831349..841437 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3267.t2.start1	Gvermi3267.t2.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 831349..831351 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3267.t2.CDS1	Gvermi3267.t2.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 831349..832902 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3267.t2.exon1	Gvermi3267.t2.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 831349..832902 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3267.t2.stop1	Gvermi3267.t2.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 832900..832902 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3267.t2	Gvermi3267.t2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 831349..832902 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:831349..832902+
coding sequence from alignment at ScGOVlb_41:831349..832902+

mRNA sequence

>Gvermi3267.t2 ID=Gvermi3267.t2|Name=Gvermi3267.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=518bp
MSQGVDVTDVLIVGAGPTGLVLAIELARRNIPLRIVDSKAKPSKTSRSFT
IHARTLEMFEDMGIAEKFVCNGYKLNGFAFNFQGQTVRPKLEFHGLDTPF
PFILSVSQTVTERLLLEHLEHVFGVKVEWGSEVVRLVSSAGGEAYSAVIR
GADGTEERSSVKWIIGCDGQRSTVRREAGLEFEGDMYEDTVMQLMDTPVS
GFEWAEDAVHYYMSKDRFLLLARLPHNSYRAIVSYKGGIDDNDKEKAREL
FQDVVNSLVDGVTLGTPTWVSKWRVWKIQASKYRHRNVIIAGDAAHVLSP
AGGQGMNCGMQDAYNIGWKLALVVSGGAGEELLDSYESERKAIGAQVIAG
ADAIHNILMAHGKGVRERLEVTQQEGWHAAAVRRISGVSYRYGTGAWAGE
RVGDAQLGTTRLRRLLCGARFTLLLTRASRDDAAGVVRAARAALGGALRV
VCVQCGRDAAQLADSCDSDADGQLRARLGDKPTALLVRPDGYAAAADPLP
GAPRLRRYLSQFSAQSL*

spliced messenger RNA

>Gvermi3267.t2 ID=Gvermi3267.t2|Name=Gvermi3267.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at ScGOVlb_41:831349..832902+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCAAGGAGTAGATGTGACAGATGTGCTGATCGTGGGAGCTGGACC
GACCGGACTGGTACTAGCAATCGAACTTGCGCGGAGAAACATTCCGCTGC
GTATTGTCGATAGCAAAGCCAAACCGAGCAAAACATCTCGCTCTTTCACA
ATTCATGCGCGAACGTTGGAGATGTTCGAGGACATGGGCATAGCAGAAAA
GTTTGTCTGCAATGGATACAAGCTGAACGGCTTTGCGTTCAACTTTCAAG
GGCAGACAGTGCGCCCCAAGCTGGAATTTCACGGTTTGGACACACCGTTT
CCATTCATTTTGAGTGTGAGTCAAACGGTAACGGAGAGGCTGCTGCTTGA
GCATTTGGAACACGTGTTTGGTGTGAAAGTGGAATGGGGCAGCGAGGTAG
TTCGGCTGGTTAGCTCGGCTGGTGGTGAGGCGTACTCAGCGGTAATTCGT
GGTGCAGACGGGACTGAGGAGCGCAGCTCGGTCAAGTGGATTATCGGATG
CGACGGGCAGCGCAGCACAGTACGCAGAGAGGCGGGACTTGAGTTTGAGG
GCGACATGTACGAAGACACAGTGATGCAACTAATGGACACGCCCGTGAGC
GGCTTCGAATGGGCGGAGGATGCGGTTCACTACTACATGTCGAAGGATCG
TTTTTTGCTGCTTGCACGACTGCCACACAATTCGTACCGCGCAATCGTGA
GCTACAAAGGAGGCATCGACGACAACGACAAAGAAAAGGCGCGCGAGCTG
TTCCAGGACGTGGTTAACTCGCTGGTAGACGGGGTGACGCTGGGAACGCC
CACATGGGTTTCCAAGTGGCGCGTGTGGAAGATTCAAGCTAGCAAATACA
GACACAGAAACGTGATTATAGCGGGCGACGCGGCGCACGTTCTATCGCCG
GCGGGCGGACAGGGCATGAACTGCGGTATGCAAGACGCGTACAATATCGG
GTGGAAGCTGGCGCTGGTGGTGAGCGGCGGCGCCGGCGAAGAACTGCTGG
ACAGTTACGAGAGCGAGCGCAAGGCGATCGGAGCGCAAGTGATCGCGGGC
GCTGACGCGATCCACAACATCTTGATGGCGCACGGTAAAGGGGTGAGGGA
GCGTTTGGAGGTGACGCAACAGGAAGGCTGGCACGCGGCCGCTGTGCGGC
GCATCTCGGGCGTGAGCTACCGCTACGGCACTGGGGCGTGGGCGGGCGAG
CGGGTGGGGGACGCGCAGCTGGGCACGACGCGCCTCCGGCGGCTGCTGTG
CGGCGCGCGCTTCACGCTGCTGCTGACGCGCGCGTCGCGGGACGACGCAG
CCGGCGTGGTGCGCGCCGCACGCGCGGCGCTGGGCGGCGCGCTGCGCGTG
GTGTGCGTGCAGTGCGGGCGCGACGCGGCGCAGCTGGCCGACTCGTGCGA
CAGCGACGCAGATGGGCAGCTGCGGGCGCGGCTCGGCGACAAGCCTACCG
CGCTGCTAGTGCGCCCGGACGGCTACGCAGCCGCCGCAGACCCGCTCCCC
GGCGCGCCCCGCCTGCGGCGCTACCTGAGCCAATTCTCCGCCCAGAGCCT
CTAA

protein sequence of Gvermi3267.t2

>Gvermi3267.t2 ID=Gvermi3267.t2|Name=Gvermi3267.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=518bp
MSQGVDVTDVLIVGAGPTGLVLAIELARRNIPLRIVDSKAKPSKTSRSFT
IHARTLEMFEDMGIAEKFVCNGYKLNGFAFNFQGQTVRPKLEFHGLDTPF
PFILSVSQTVTERLLLEHLEHVFGVKVEWGSEVVRLVSSAGGEAYSAVIR
GADGTEERSSVKWIIGCDGQRSTVRREAGLEFEGDMYEDTVMQLMDTPVS
GFEWAEDAVHYYMSKDRFLLLARLPHNSYRAIVSYKGGIDDNDKEKAREL
FQDVVNSLVDGVTLGTPTWVSKWRVWKIQASKYRHRNVIIAGDAAHVLSP
AGGQGMNCGMQDAYNIGWKLALVVSGGAGEELLDSYESERKAIGAQVIAG
ADAIHNILMAHGKGVRERLEVTQQEGWHAAAVRRISGVSYRYGTGAWAGE
RVGDAQLGTTRLRRLLCGARFTLLLTRASRDDAAGVVRAARAALGGALRV
VCVQCGRDAAQLADSCDSDADGQLRARLGDKPTALLVRPDGYAAAADPLP
GAPRLRRYLSQFSAQSL*

mRNA from alignment at ScGOVlb_41:831349..832902+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3267.t2 ID=Gvermi3267.t2|Name=Gvermi3267.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at ScGOVlb_41:831349..832902+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCAAGGAGTAGATGTGACAGATGTGCTGATCGTGGGAGCTGGACC
GACCGGACTGGTACTAGCAATCGAACTTGCGCGGAGAAACATTCCGCTGC
GTATTGTCGATAGCAAAGCCAAACCGAGCAAAACATCTCGCTCTTTCACA
ATTCATGCGCGAACGTTGGAGATGTTCGAGGACATGGGCATAGCAGAAAA
GTTTGTCTGCAATGGATACAAGCTGAACGGCTTTGCGTTCAACTTTCAAG
GGCAGACAGTGCGCCCCAAGCTGGAATTTCACGGTTTGGACACACCGTTT
CCATTCATTTTGAGTGTGAGTCAAACGGTAACGGAGAGGCTGCTGCTTGA
GCATTTGGAACACGTGTTTGGTGTGAAAGTGGAATGGGGCAGCGAGGTAG
TTCGGCTGGTTAGCTCGGCTGGTGGTGAGGCGTACTCAGCGGTAATTCGT
GGTGCAGACGGGACTGAGGAGCGCAGCTCGGTCAAGTGGATTATCGGATG
CGACGGGCAGCGCAGCACAGTACGCAGAGAGGCGGGACTTGAGTTTGAGG
GCGACATGTACGAAGACACAGTGATGCAACTAATGGACACGCCCGTGAGC
GGCTTCGAATGGGCGGAGGATGCGGTTCACTACTACATGTCGAAGGATCG
TTTTTTGCTGCTTGCACGACTGCCACACAATTCGTACCGCGCAATCGTGA
GCTACAAAGGAGGCATCGACGACAACGACAAAGAAAAGGCGCGCGAGCTG
TTCCAGGACGTGGTTAACTCGCTGGTAGACGGGGTGACGCTGGGAACGCC
CACATGGGTTTCCAAGTGGCGCGTGTGGAAGATTCAAGCTAGCAAATACA
GACACAGAAACGTGATTATAGCGGGCGACGCGGCGCACGTTCTATCGCCG
GCGGGCGGACAGGGCATGAACTGCGGTATGCAAGACGCGTACAATATCGG
GTGGAAGCTGGCGCTGGTGGTGAGCGGCGGCGCCGGCGAAGAACTGCTGG
ACAGTTACGAGAGCGAGCGCAAGGCGATCGGAGCGCAAGTGATCGCGGGC
GCTGACGCGATCCACAACATCTTGATGGCGCACGGTAAAGGGGTGAGGGA
GCGTTTGGAGGTGACGCAACAGGAAGGCTGGCACGCGGCCGCTGTGCGGC
GCATCTCGGGCGTGAGCTACCGCTACGGCACTGGGGCGTGGGCGGGCGAG
CGGGTGGGGGACGCGCAGCTGGGCACGACGCGCCTCCGGCGGCTGCTGTG
CGGCGCGCGCTTCACGCTGCTGCTGACGCGCGCGTCGCGGGACGACGCAG
CCGGCGTGGTGCGCGCCGCACGCGCGGCGCTGGGCGGCGCGCTGCGCGTG
GTGTGCGTGCAGTGCGGGCGCGACGCGGCGCAGCTGGCCGACTCGTGCGA
CAGCGACGCAGATGGGCAGCTGCGGGCGCGGCTCGGCGACAAGCCTACCG
CGCTGCTAGTGCGCCCGGACGGCTACGCAGCCGCCGCAGACCCGCTCCCC
GGCGCGCCCCGCCTGCGGCGCTACCTGAGCCAATTCTCCGCCCAGAGCCT
CTAA

Coding sequence (CDS) from alignment at ScGOVlb_41:831349..832902+

>Gvermi3267.t2 ID=Gvermi3267.t2|Name=Gvermi3267.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1554bp|location=Sequence derived from alignment at ScGOVlb_41:831349..832902+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCAAGGAGTAGATGTGACAGATGTGCTGATCGTGGGAGCTGGACC
GACCGGACTGGTACTAGCAATCGAACTTGCGCGGAGAAACATTCCGCTGC
GTATTGTCGATAGCAAAGCCAAACCGAGCAAAACATCTCGCTCTTTCACA
ATTCATGCGCGAACGTTGGAGATGTTCGAGGACATGGGCATAGCAGAAAA
GTTTGTCTGCAATGGATACAAGCTGAACGGCTTTGCGTTCAACTTTCAAG
GGCAGACAGTGCGCCCCAAGCTGGAATTTCACGGTTTGGACACACCGTTT
CCATTCATTTTGAGTGTGAGTCAAACGGTAACGGAGAGGCTGCTGCTTGA
GCATTTGGAACACGTGTTTGGTGTGAAAGTGGAATGGGGCAGCGAGGTAG
TTCGGCTGGTTAGCTCGGCTGGTGGTGAGGCGTACTCAGCGGTAATTCGT
GGTGCAGACGGGACTGAGGAGCGCAGCTCGGTCAAGTGGATTATCGGATG
CGACGGGCAGCGCAGCACAGTACGCAGAGAGGCGGGACTTGAGTTTGAGG
GCGACATGTACGAAGACACAGTGATGCAACTAATGGACACGCCCGTGAGC
GGCTTCGAATGGGCGGAGGATGCGGTTCACTACTACATGTCGAAGGATCG
TTTTTTGCTGCTTGCACGACTGCCACACAATTCGTACCGCGCAATCGTGA
GCTACAAAGGAGGCATCGACGACAACGACAAAGAAAAGGCGCGCGAGCTG
TTCCAGGACGTGGTTAACTCGCTGGTAGACGGGGTGACGCTGGGAACGCC
CACATGGGTTTCCAAGTGGCGCGTGTGGAAGATTCAAGCTAGCAAATACA
GACACAGAAACGTGATTATAGCGGGCGACGCGGCGCACGTTCTATCGCCG
GCGGGCGGACAGGGCATGAACTGCGGTATGCAAGACGCGTACAATATCGG
GTGGAAGCTGGCGCTGGTGGTGAGCGGCGGCGCCGGCGAAGAACTGCTGG
ACAGTTACGAGAGCGAGCGCAAGGCGATCGGAGCGCAAGTGATCGCGGGC
GCTGACGCGATCCACAACATCTTGATGGCGCACGGTAAAGGGGTGAGGGA
GCGTTTGGAGGTGACGCAACAGGAAGGCTGGCACGCGGCCGCTGTGCGGC
GCATCTCGGGCGTGAGCTACCGCTACGGCACTGGGGCGTGGGCGGGCGAG
CGGGTGGGGGACGCGCAGCTGGGCACGACGCGCCTCCGGCGGCTGCTGTG
CGGCGCGCGCTTCACGCTGCTGCTGACGCGCGCGTCGCGGGACGACGCAG
CCGGCGTGGTGCGCGCCGCACGCGCGGCGCTGGGCGGCGCGCTGCGCGTG
GTGTGCGTGCAGTGCGGGCGCGACGCGGCGCAGCTGGCCGACTCGTGCGA
CAGCGACGCAGATGGGCAGCTGCGGGCGCGGCTCGGCGACAAGCCTACCG
CGCTGCTAGTGCGCCCGGACGGCTACGCAGCCGCCGCAGACCCGCTCCCC
GGCGCGCCCCGCCTGCGGCGCTACCTGAGCCAATTCTCCGCCCAGAGCCT
CTAA