Gvermi3253.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3253.t1
Unique NameGvermi3253.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length461
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:783627..785009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3253Gvermi3253Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 783627..785009 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3253.t1.stop1Gvermi3253.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 783627..783629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3253.t1.CDS1Gvermi3253.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 783627..785009 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3253.t1.exon1Gvermi3253.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 783627..785009 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3253.t1.start1Gvermi3253.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 785007..785009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3253.t1Gvermi3253.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 783627..785009 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3253.t1 ID=Gvermi3253.t1|Name=Gvermi3253.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=461bp
MPSAFRSGRLTQRNERDRDVKTARHSRRGRGRTAQHHPASRTMDLGKLGR
DEELGIHDGLPAQLRSGGLTSFFARLFRRNDYSTRPAARYADMRRADGVA
SSGRLNRHAAASSLGSLQSYATSTIRASSGPIHACLSPASTSEVGVKKRV
FIRKEDESNPVFSGQVRGETLMSARPERLTYPDFKIKEFGARDTWYSDVF
VLPHNAIRWEVMDLYTILSSIQRRWFSVTMLDVAELAEYWQMFEVFVAQY
FEIEDQIVFPFMQSAAEQASEWKKYYMVVHYNRKRLETMLMAVGSAFELF
NTCAHGEVLRKVYQALCDFLPKLLDYMEQQEGVLPNVFREFCEQESRVLL
NRASANFIVRAANGRDGIAILTRWIEDSMILQIWKDENLSARAQSSHRRW
IMNLEATHVELARRFQRRLRSMPKHEGEQPSGTMEDRFEPTRKSTRNSFK
NHTRRTIQLY*
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spliced messenger RNA

>Gvermi3253.t1 ID=Gvermi3253.t1|Name=Gvermi3253.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1383bp|location=Sequence derived from alignment at ScGOVlb_41:783627..785009- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCGGCCTTCCGTTCCGGCCGCCTTACGCAGCGCAATGAACGCGA
CCGTGATGTCAAGACCGCGCGTCATAGCCGCCGCGGTCGAGGCCGCACCG
CGCAGCACCACCCAGCATCCCGAACCATGGACCTTGGCAAACTCGGTCGC
GATGAGGAACTCGGAATTCATGACGGTCTGCCTGCACAGCTACGCTCTGG
CGGCCTTACTTCATTTTTCGCACGGCTCTTCCGCAGAAACGACTACAGCA
CTCGTCCGGCTGCGCGTTATGCTGACATGCGTCGCGCCGACGGTGTTGCT
AGTTCCGGAAGGCTTAATCGCCATGCTGCTGCGAGCAGCCTGGGCAGTTT
GCAAAGCTATGCCACCAGTACTATTCGAGCTTCCAGCGGCCCAATCCATG
CTTGCTTGTCTCCGGCTAGCACCAGTGAGGTTGGTGTCAAGAAGCGAGTC
TTCATCAGAAAAGAGGATGAGTCTAATCCCGTGTTTAGCGGTCAGGTTCG
CGGTGAAACTTTGATGTCCGCAAGACCCGAGCGCCTCACATATCCGGATT
TCAAGATCAAGGAGTTTGGCGCCCGCGATACTTGGTACAGTGACGTTTTT
GTCTTACCTCATAATGCCATTCGTTGGGAAGTGATGGATCTGTACACCAT
TCTCTCTTCCATTCAACGTCGATGGTTTTCCGTCACCATGCTTGACGTTG
CTGAGCTAGCTGAATATTGGCAGATGTTCGAGGTATTCGTGGCACAGTAC
TTTGAGATCGAGGATCAGATTGTGTTCCCGTTCATGCAAAGCGCAGCAGA
ACAGGCTTCCGAATGGAAGAAGTACTACATGGTGGTCCATTACAACCGTA
AGAGATTGGAGACTATGTTGATGGCGGTCGGTTCGGCCTTCGAGTTGTTT
AACACTTGTGCTCACGGTGAGGTCCTACGAAAGGTGTATCAAGCGCTATG
CGACTTTTTGCCAAAGCTACTGGACTACATGGAGCAGCAAGAAGGCGTCC
TTCCAAACGTATTCCGCGAATTCTGTGAACAAGAATCTAGAGTGCTTCTC
AATCGCGCATCAGCGAATTTCATCGTCCGCGCTGCTAACGGCAGGGACGG
TATTGCCATTTTGACAAGATGGATTGAGGATTCAATGATTTTACAAATAT
GGAAGGACGAAAACCTAAGCGCTCGTGCTCAGTCCTCGCATAGGCGATGG
ATTATGAATCTTGAAGCGACTCACGTCGAATTGGCGAGACGATTTCAAAG
GAGATTGCGATCCATGCCGAAACATGAGGGAGAGCAGCCATCGGGCACCA
TGGAAGACCGTTTTGAGCCCACCAGGAAATCAACTCGAAACTCGTTCAAG
AATCATACTCGAAGGACAATTCAGCTCTACTAG
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protein sequence of Gvermi3253.t1

>Gvermi3253.t1 ID=Gvermi3253.t1|Name=Gvermi3253.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=461bp
MPSAFRSGRLTQRNERDRDVKTARHSRRGRGRTAQHHPASRTMDLGKLGR
DEELGIHDGLPAQLRSGGLTSFFARLFRRNDYSTRPAARYADMRRADGVA
SSGRLNRHAAASSLGSLQSYATSTIRASSGPIHACLSPASTSEVGVKKRV
FIRKEDESNPVFSGQVRGETLMSARPERLTYPDFKIKEFGARDTWYSDVF
VLPHNAIRWEVMDLYTILSSIQRRWFSVTMLDVAELAEYWQMFEVFVAQY
FEIEDQIVFPFMQSAAEQASEWKKYYMVVHYNRKRLETMLMAVGSAFELF
NTCAHGEVLRKVYQALCDFLPKLLDYMEQQEGVLPNVFREFCEQESRVLL
NRASANFIVRAANGRDGIAILTRWIEDSMILQIWKDENLSARAQSSHRRW
IMNLEATHVELARRFQRRLRSMPKHEGEQPSGTMEDRFEPTRKSTRNSFK
NHTRRTIQLY*
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mRNA from alignment at ScGOVlb_41:783627..785009-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3253.t1 ID=Gvermi3253.t1|Name=Gvermi3253.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1383bp|location=Sequence derived from alignment at ScGOVlb_41:783627..785009- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCGGCCTTCCGTTCCGGCCGCCTTACGCAGCGCAATGAACGCGA
CCGTGATGTCAAGACCGCGCGTCATAGCCGCCGCGGTCGAGGCCGCACCG
CGCAGCACCACCCAGCATCCCGAACCATGGACCTTGGCAAACTCGGTCGC
GATGAGGAACTCGGAATTCATGACGGTCTGCCTGCACAGCTACGCTCTGG
CGGCCTTACTTCATTTTTCGCACGGCTCTTCCGCAGAAACGACTACAGCA
CTCGTCCGGCTGCGCGTTATGCTGACATGCGTCGCGCCGACGGTGTTGCT
AGTTCCGGAAGGCTTAATCGCCATGCTGCTGCGAGCAGCCTGGGCAGTTT
GCAAAGCTATGCCACCAGTACTATTCGAGCTTCCAGCGGCCCAATCCATG
CTTGCTTGTCTCCGGCTAGCACCAGTGAGGTTGGTGTCAAGAAGCGAGTC
TTCATCAGAAAAGAGGATGAGTCTAATCCCGTGTTTAGCGGTCAGGTTCG
CGGTGAAACTTTGATGTCCGCAAGACCCGAGCGCCTCACATATCCGGATT
TCAAGATCAAGGAGTTTGGCGCCCGCGATACTTGGTACAGTGACGTTTTT
GTCTTACCTCATAATGCCATTCGTTGGGAAGTGATGGATCTGTACACCAT
TCTCTCTTCCATTCAACGTCGATGGTTTTCCGTCACCATGCTTGACGTTG
CTGAGCTAGCTGAATATTGGCAGATGTTCGAGGTATTCGTGGCACAGTAC
TTTGAGATCGAGGATCAGATTGTGTTCCCGTTCATGCAAAGCGCAGCAGA
ACAGGCTTCCGAATGGAAGAAGTACTACATGGTGGTCCATTACAACCGTA
AGAGATTGGAGACTATGTTGATGGCGGTCGGTTCGGCCTTCGAGTTGTTT
AACACTTGTGCTCACGGTGAGGTCCTACGAAAGGTGTATCAAGCGCTATG
CGACTTTTTGCCAAAGCTACTGGACTACATGGAGCAGCAAGAAGGCGTCC
TTCCAAACGTATTCCGCGAATTCTGTGAACAAGAATCTAGAGTGCTTCTC
AATCGCGCATCAGCGAATTTCATCGTCCGCGCTGCTAACGGCAGGGACGG
TATTGCCATTTTGACAAGATGGATTGAGGATTCAATGATTTTACAAATAT
GGAAGGACGAAAACCTAAGCGCTCGTGCTCAGTCCTCGCATAGGCGATGG
ATTATGAATCTTGAAGCGACTCACGTCGAATTGGCGAGACGATTTCAAAG
GAGATTGCGATCCATGCCGAAACATGAGGGAGAGCAGCCATCGGGCACCA
TGGAAGACCGTTTTGAGCCCACCAGGAAATCAACTCGAAACTCGTTCAAG
AATCATACTCGAAGGACAATTCAGCTCTACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_41:783627..785009-

>Gvermi3253.t1 ID=Gvermi3253.t1|Name=Gvermi3253.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1383bp|location=Sequence derived from alignment at ScGOVlb_41:783627..785009- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCGGCCTTCCGTTCCGGCCGCCTTACGCAGCGCAATGAACGCGA
CCGTGATGTCAAGACCGCGCGTCATAGCCGCCGCGGTCGAGGCCGCACCG
CGCAGCACCACCCAGCATCCCGAACCATGGACCTTGGCAAACTCGGTCGC
GATGAGGAACTCGGAATTCATGACGGTCTGCCTGCACAGCTACGCTCTGG
CGGCCTTACTTCATTTTTCGCACGGCTCTTCCGCAGAAACGACTACAGCA
CTCGTCCGGCTGCGCGTTATGCTGACATGCGTCGCGCCGACGGTGTTGCT
AGTTCCGGAAGGCTTAATCGCCATGCTGCTGCGAGCAGCCTGGGCAGTTT
GCAAAGCTATGCCACCAGTACTATTCGAGCTTCCAGCGGCCCAATCCATG
CTTGCTTGTCTCCGGCTAGCACCAGTGAGGTTGGTGTCAAGAAGCGAGTC
TTCATCAGAAAAGAGGATGAGTCTAATCCCGTGTTTAGCGGTCAGGTTCG
CGGTGAAACTTTGATGTCCGCAAGACCCGAGCGCCTCACATATCCGGATT
TCAAGATCAAGGAGTTTGGCGCCCGCGATACTTGGTACAGTGACGTTTTT
GTCTTACCTCATAATGCCATTCGTTGGGAAGTGATGGATCTGTACACCAT
TCTCTCTTCCATTCAACGTCGATGGTTTTCCGTCACCATGCTTGACGTTG
CTGAGCTAGCTGAATATTGGCAGATGTTCGAGGTATTCGTGGCACAGTAC
TTTGAGATCGAGGATCAGATTGTGTTCCCGTTCATGCAAAGCGCAGCAGA
ACAGGCTTCCGAATGGAAGAAGTACTACATGGTGGTCCATTACAACCGTA
AGAGATTGGAGACTATGTTGATGGCGGTCGGTTCGGCCTTCGAGTTGTTT
AACACTTGTGCTCACGGTGAGGTCCTACGAAAGGTGTATCAAGCGCTATG
CGACTTTTTGCCAAAGCTACTGGACTACATGGAGCAGCAAGAAGGCGTCC
TTCCAAACGTATTCCGCGAATTCTGTGAACAAGAATCTAGAGTGCTTCTC
AATCGCGCATCAGCGAATTTCATCGTCCGCGCTGCTAACGGCAGGGACGG
TATTGCCATTTTGACAAGATGGATTGAGGATTCAATGATTTTACAAATAT
GGAAGGACGAAAACCTAAGCGCTCGTGCTCAGTCCTCGCATAGGCGATGG
ATTATGAATCTTGAAGCGACTCACGTCGAATTGGCGAGACGATTTCAAAG
GAGATTGCGATCCATGCCGAAACATGAGGGAGAGCAGCCATCGGGCACCA
TGGAAGACCGTTTTGAGCCCACCAGGAAATCAACTCGAAACTCGTTCAAG
AATCATACTCGAAGGACAATTCAGCTCTACTAG
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