Gvermi3211.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi3211.t1
Unique NameGvermi3211.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_41contigScGOVlb_41:626882..627541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI34115
PFAMsEfg1
Max annot lvl4776|Peronosporales
Evalue9.59e-09
EggNOG OGsKOG4484@1|root,KOG4484@2759|Eukaryota,3Q9MS@4776|Peronosporales
DescriptionrRNA-processing protein Efg1
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi3211Gvermi3211Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_41 626882..627541 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3211.t1.start1Gvermi3211.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_41 626882..626884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3211.t1.CDS1Gvermi3211.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_41 626882..627541 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3211.t1.exon1Gvermi3211.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_41 626882..627541 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3211.t1.stop1Gvermi3211.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_41 627539..627541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi3211.t1Gvermi3211.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_41 626882..627541 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi3211.t1 ID=Gvermi3211.t1|Name=Gvermi3211.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=220bp
MVSHVRFGNDSDDEQKTFSSDGVQVSSRSKLSNMKITQKKTQMKSSSETK
RKSRSKLPAKQIRNLERFLNYKEHELPPGVVKKKKEELEEWKRVQAERER
RARERNFEKRYRRVKFFEIRKVQRVLQNIAERGDRPEDQDAKLQAQKDLL
YIQQYPKDKKYIALFPSGGHSDESKKKVEQMRALIAGSGVAAEEQMTLKT
NNALTDDFFVDLDMDNENK*
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spliced messenger RNA

>Gvermi3211.t1 ID=Gvermi3211.t1|Name=Gvermi3211.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=660bp|location=Sequence derived from alignment at ScGOVlb_41:626882..627541+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTATCTCACGTCCGGTTTGGCAATGATAGCGACGATGAACAAAAAAC
ATTTTCCTCTGATGGAGTGCAAGTATCCTCGAGGAGCAAACTTTCTAACA
TGAAAATCACTCAGAAGAAAACGCAAATGAAGTCGTCCAGCGAAACCAAA
AGAAAGTCACGATCCAAGCTTCCAGCGAAGCAGATTCGAAACCTTGAACG
TTTTCTCAATTACAAGGAACACGAGCTACCCCCTGGGGTTGTTAAGAAAA
AGAAGGAAGAACTCGAGGAATGGAAAAGAGTGCAGGCAGAACGAGAACGC
AGAGCACGTGAGCGGAACTTTGAGAAACGCTATAGAAGAGTCAAATTCTT
CGAAATTCGAAAGGTGCAGCGTGTTCTGCAGAATATTGCCGAAAGAGGTG
ATAGACCCGAAGACCAGGACGCTAAACTCCAAGCGCAGAAAGATTTGTTA
TACATCCAACAATACCCCAAAGACAAGAAGTACATAGCTTTGTTCCCATC
TGGAGGTCACAGTGATGAATCAAAAAAGAAGGTTGAACAGATGCGAGCTC
TTATTGCAGGTTCAGGCGTTGCCGCCGAAGAACAGATGACCTTGAAGACG
AACAATGCTCTGACTGATGATTTCTTTGTAGATCTAGATATGGATAACGA
AAACAAATAA
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protein sequence of Gvermi3211.t1

>Gvermi3211.t1 ID=Gvermi3211.t1|Name=Gvermi3211.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=220bp
MVSHVRFGNDSDDEQKTFSSDGVQVSSRSKLSNMKITQKKTQMKSSSETK
RKSRSKLPAKQIRNLERFLNYKEHELPPGVVKKKKEELEEWKRVQAERER
RARERNFEKRYRRVKFFEIRKVQRVLQNIAERGDRPEDQDAKLQAQKDLL
YIQQYPKDKKYIALFPSGGHSDESKKKVEQMRALIAGSGVAAEEQMTLKT
NNALTDDFFVDLDMDNENK*
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mRNA from alignment at ScGOVlb_41:626882..627541+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi3211.t1 ID=Gvermi3211.t1|Name=Gvermi3211.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=660bp|location=Sequence derived from alignment at ScGOVlb_41:626882..627541+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTATCTCACGTCCGGTTTGGCAATGATAGCGACGATGAACAAAAAAC
ATTTTCCTCTGATGGAGTGCAAGTATCCTCGAGGAGCAAACTTTCTAACA
TGAAAATCACTCAGAAGAAAACGCAAATGAAGTCGTCCAGCGAAACCAAA
AGAAAGTCACGATCCAAGCTTCCAGCGAAGCAGATTCGAAACCTTGAACG
TTTTCTCAATTACAAGGAACACGAGCTACCCCCTGGGGTTGTTAAGAAAA
AGAAGGAAGAACTCGAGGAATGGAAAAGAGTGCAGGCAGAACGAGAACGC
AGAGCACGTGAGCGGAACTTTGAGAAACGCTATAGAAGAGTCAAATTCTT
CGAAATTCGAAAGGTGCAGCGTGTTCTGCAGAATATTGCCGAAAGAGGTG
ATAGACCCGAAGACCAGGACGCTAAACTCCAAGCGCAGAAAGATTTGTTA
TACATCCAACAATACCCCAAAGACAAGAAGTACATAGCTTTGTTCCCATC
TGGAGGTCACAGTGATGAATCAAAAAAGAAGGTTGAACAGATGCGAGCTC
TTATTGCAGGTTCAGGCGTTGCCGCCGAAGAACAGATGACCTTGAAGACG
AACAATGCTCTGACTGATGATTTCTTTGTAGATCTAGATATGGATAACGA
AAACAAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_41:626882..627541+

>Gvermi3211.t1 ID=Gvermi3211.t1|Name=Gvermi3211.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=660bp|location=Sequence derived from alignment at ScGOVlb_41:626882..627541+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTATCTCACGTCCGGTTTGGCAATGATAGCGACGATGAACAAAAAAC
ATTTTCCTCTGATGGAGTGCAAGTATCCTCGAGGAGCAAACTTTCTAACA
TGAAAATCACTCAGAAGAAAACGCAAATGAAGTCGTCCAGCGAAACCAAA
AGAAAGTCACGATCCAAGCTTCCAGCGAAGCAGATTCGAAACCTTGAACG
TTTTCTCAATTACAAGGAACACGAGCTACCCCCTGGGGTTGTTAAGAAAA
AGAAGGAAGAACTCGAGGAATGGAAAAGAGTGCAGGCAGAACGAGAACGC
AGAGCACGTGAGCGGAACTTTGAGAAACGCTATAGAAGAGTCAAATTCTT
CGAAATTCGAAAGGTGCAGCGTGTTCTGCAGAATATTGCCGAAAGAGGTG
ATAGACCCGAAGACCAGGACGCTAAACTCCAAGCGCAGAAAGATTTGTTA
TACATCCAACAATACCCCAAAGACAAGAAGTACATAGCTTTGTTCCCATC
TGGAGGTCACAGTGATGAATCAAAAAAGAAGGTTGAACAGATGCGAGCTC
TTATTGCAGGTTCAGGCGTTGCCGCCGAAGAACAGATGACCTTGAAGACG
AACAATGCTCTGACTGATGATTTCTTTGTAGATCTAGATATGGATAACGA
AAACAAATAA
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