Gvermi3205.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi3205.t1
Unique Name	Gvermi3205.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	477

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_41	contig	ScGOVlb_41:608997..610427 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703958.1
Preferred name	srk1
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08286,ko:K08794
KEGG Pathway	ko04921,ko04925,map04921,map04925
GOs	GO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue	1.42e-32
EggNOG OGs	KOG0032@1\|root,KOG0032@2759\|Eukaryota
EC	2.7.11.17
Description	protein serine/threonine kinase activity
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi3205	Gvermi3205	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_41 608997..610427 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3205.t1.start1	Gvermi3205.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_41 608997..608999 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3205.t1.CDS1	Gvermi3205.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_41 608997..610427 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3205.t1.exon1	Gvermi3205.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_41 608997..610427 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3205.t1.stop1	Gvermi3205.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_41 610425..610427 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi3205.t1	Gvermi3205.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_41 608997..610427 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_41:608997..610427+
coding sequence from alignment at ScGOVlb_41:608997..610427+

mRNA sequence

>Gvermi3205.t1 ID=Gvermi3205.t1|Name=Gvermi3205.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=477bp
MKGWLTLREGLLRTQRYYFRLQWGFLSQHLTESSAAIVRYFVHGSRIHIA
RGGLRVVIELGELGLAFAAHQRTAARVVLVADDAYIFQTWVTCLFRAKNR
NIRRWYQLGETLGRGIDGIVVLGTSVQNRHLVAVKRIGWFSLSTTVGQKL
RYILREIQLQHKAAKRSSNVAAVLDVFYDDEFCYMVMQYGNKGSLCDLLS
VRDGLLGEQFVRNVVIQLGKCLLSMHQVNLVHRDIKCDNVLIAHTRRVPL
RVLLCDFGFATVWRPELKHSILSFCREPLGTEAYFAPELLRGQPYGAPVD
VFALGVLCHVCLTGAFPFESPSQQRTLRMIENGALPLLHGAQVSEEAKSF
TRALLNQDSYKRPPAVALLQHRWIRGGHESFRRLRRAPPAAVWRRLFHVV
TAAHAMQRLAKRARLVQSQGGRISFRPSSARARMATNRRITLRMPASAGS
ETRRIRSDMHDRRLPASKRRRQQTAD*

spliced messenger RNA

>Gvermi3205.t1 ID=Gvermi3205.t1|Name=Gvermi3205.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at ScGOVlb_41:608997..610427+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGGCTGGCTCACTCTCCGCGAGGGCCTCCTGCGCACGCAGCGCTA
CTACTTCCGCCTGCAGTGGGGCTTTCTGTCGCAGCATCTTACCGAATCTT
CCGCCGCAATCGTGCGCTATTTCGTCCACGGATCTCGCATTCACATAGCG
CGCGGGGGGTTGCGCGTCGTCATCGAATTGGGCGAGCTGGGGCTGGCCTT
TGCTGCGCACCAACGCACAGCCGCCCGTGTCGTGCTTGTGGCCGATGACG
CCTACATCTTTCAGACATGGGTCACCTGCCTCTTCCGCGCCAAGAACCGC
AACATACGGCGATGGTACCAACTAGGCGAAACGCTTGGGCGAGGCATAGA
CGGAATCGTCGTGCTTGGCACCTCTGTCCAGAATCGTCACCTTGTCGCCG
TCAAGAGGATCGGATGGTTCAGCCTATCCACAACCGTCGGTCAAAAGCTG
CGATACATCCTTCGTGAGATTCAACTGCAACACAAAGCGGCGAAGCGATC
CTCAAACGTTGCCGCTGTTCTCGACGTATTTTACGACGACGAGTTCTGCT
ACATGGTCATGCAATACGGCAACAAGGGTTCGCTTTGCGACTTACTCTCA
GTTCGCGACGGGCTCTTGGGCGAACAGTTCGTGCGCAATGTCGTCATACA
GTTGGGCAAATGCTTGCTGTCCATGCACCAAGTCAATCTCGTGCATCGCG
ATATCAAATGTGATAACGTGCTTATTGCACACACCCGACGCGTCCCTCTG
CGCGTTCTGCTGTGCGACTTCGGCTTTGCCACAGTGTGGCGCCCTGAACT
CAAGCACTCTATCCTGTCGTTTTGTCGAGAGCCACTGGGAACAGAGGCGT
ACTTTGCCCCAGAATTGTTGAGAGGGCAACCGTACGGAGCGCCGGTGGAC
GTCTTTGCTCTCGGGGTGCTCTGCCATGTTTGTCTCACGGGCGCTTTCCC
TTTCGAGTCGCCCTCGCAACAGCGAACGCTGCGCATGATCGAAAACGGTG
CCTTGCCTCTTCTGCATGGCGCGCAAGTTTCAGAGGAAGCGAAGTCGTTT
ACGCGCGCTTTGCTCAACCAGGACTCTTACAAACGCCCGCCGGCGGTGGC
ACTGCTTCAGCACCGCTGGATTCGCGGCGGCCACGAAAGCTTCAGGCGGC
TGCGGCGCGCGCCGCCCGCCGCAGTGTGGAGGAGACTGTTTCACGTTGTG
ACAGCAGCCCACGCGATGCAGCGGCTGGCGAAGCGCGCGCGCCTTGTGCA
GTCGCAAGGCGGGCGCATCTCCTTCCGACCGTCGAGTGCGCGCGCCAGAA
TGGCAACGAATCGCCGCATCACCTTGCGCATGCCCGCGTCCGCGGGCTCA
GAGACAAGGCGCATTCGCTCCGACATGCACGACCGTAGACTGCCCGCAAG
TAAGCGAAGAAGACAGCAGACAGCCGATTGA

protein sequence of Gvermi3205.t1

>Gvermi3205.t1 ID=Gvermi3205.t1|Name=Gvermi3205.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=477bp
MKGWLTLREGLLRTQRYYFRLQWGFLSQHLTESSAAIVRYFVHGSRIHIA
RGGLRVVIELGELGLAFAAHQRTAARVVLVADDAYIFQTWVTCLFRAKNR
NIRRWYQLGETLGRGIDGIVVLGTSVQNRHLVAVKRIGWFSLSTTVGQKL
RYILREIQLQHKAAKRSSNVAAVLDVFYDDEFCYMVMQYGNKGSLCDLLS
VRDGLLGEQFVRNVVIQLGKCLLSMHQVNLVHRDIKCDNVLIAHTRRVPL
RVLLCDFGFATVWRPELKHSILSFCREPLGTEAYFAPELLRGQPYGAPVD
VFALGVLCHVCLTGAFPFESPSQQRTLRMIENGALPLLHGAQVSEEAKSF
TRALLNQDSYKRPPAVALLQHRWIRGGHESFRRLRRAPPAAVWRRLFHVV
TAAHAMQRLAKRARLVQSQGGRISFRPSSARARMATNRRITLRMPASAGS
ETRRIRSDMHDRRLPASKRRRQQTAD*

mRNA from alignment at ScGOVlb_41:608997..610427+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi3205.t1 ID=Gvermi3205.t1|Name=Gvermi3205.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at ScGOVlb_41:608997..610427+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAGGCTGGCTCACTCTCCGCGAGGGCCTCCTGCGCACGCAGCGCTA
CTACTTCCGCCTGCAGTGGGGCTTTCTGTCGCAGCATCTTACCGAATCTT
CCGCCGCAATCGTGCGCTATTTCGTCCACGGATCTCGCATTCACATAGCG
CGCGGGGGGTTGCGCGTCGTCATCGAATTGGGCGAGCTGGGGCTGGCCTT
TGCTGCGCACCAACGCACAGCCGCCCGTGTCGTGCTTGTGGCCGATGACG
CCTACATCTTTCAGACATGGGTCACCTGCCTCTTCCGCGCCAAGAACCGC
AACATACGGCGATGGTACCAACTAGGCGAAACGCTTGGGCGAGGCATAGA
CGGAATCGTCGTGCTTGGCACCTCTGTCCAGAATCGTCACCTTGTCGCCG
TCAAGAGGATCGGATGGTTCAGCCTATCCACAACCGTCGGTCAAAAGCTG
CGATACATCCTTCGTGAGATTCAACTGCAACACAAAGCGGCGAAGCGATC
CTCAAACGTTGCCGCTGTTCTCGACGTATTTTACGACGACGAGTTCTGCT
ACATGGTCATGCAATACGGCAACAAGGGTTCGCTTTGCGACTTACTCTCA
GTTCGCGACGGGCTCTTGGGCGAACAGTTCGTGCGCAATGTCGTCATACA
GTTGGGCAAATGCTTGCTGTCCATGCACCAAGTCAATCTCGTGCATCGCG
ATATCAAATGTGATAACGTGCTTATTGCACACACCCGACGCGTCCCTCTG
CGCGTTCTGCTGTGCGACTTCGGCTTTGCCACAGTGTGGCGCCCTGAACT
CAAGCACTCTATCCTGTCGTTTTGTCGAGAGCCACTGGGAACAGAGGCGT
ACTTTGCCCCAGAATTGTTGAGAGGGCAACCGTACGGAGCGCCGGTGGAC
GTCTTTGCTCTCGGGGTGCTCTGCCATGTTTGTCTCACGGGCGCTTTCCC
TTTCGAGTCGCCCTCGCAACAGCGAACGCTGCGCATGATCGAAAACGGTG
CCTTGCCTCTTCTGCATGGCGCGCAAGTTTCAGAGGAAGCGAAGTCGTTT
ACGCGCGCTTTGCTCAACCAGGACTCTTACAAACGCCCGCCGGCGGTGGC
ACTGCTTCAGCACCGCTGGATTCGCGGCGGCCACGAAAGCTTCAGGCGGC
TGCGGCGCGCGCCGCCCGCCGCAGTGTGGAGGAGACTGTTTCACGTTGTG
ACAGCAGCCCACGCGATGCAGCGGCTGGCGAAGCGCGCGCGCCTTGTGCA
GTCGCAAGGCGGGCGCATCTCCTTCCGACCGTCGAGTGCGCGCGCCAGAA
TGGCAACGAATCGCCGCATCACCTTGCGCATGCCCGCGTCCGCGGGCTCA
GAGACAAGGCGCATTCGCTCCGACATGCACGACCGTAGACTGCCCGCAAG
TAAGCGAAGAAGACAGCAGACAGCCGATTGA

Coding sequence (CDS) from alignment at ScGOVlb_41:608997..610427+

>Gvermi3205.t1 ID=Gvermi3205.t1|Name=Gvermi3205.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1431bp|location=Sequence derived from alignment at ScGOVlb_41:608997..610427+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAGGCTGGCTCACTCTCCGCGAGGGCCTCCTGCGCACGCAGCGCTA
CTACTTCCGCCTGCAGTGGGGCTTTCTGTCGCAGCATCTTACCGAATCTT
CCGCCGCAATCGTGCGCTATTTCGTCCACGGATCTCGCATTCACATAGCG
CGCGGGGGGTTGCGCGTCGTCATCGAATTGGGCGAGCTGGGGCTGGCCTT
TGCTGCGCACCAACGCACAGCCGCCCGTGTCGTGCTTGTGGCCGATGACG
CCTACATCTTTCAGACATGGGTCACCTGCCTCTTCCGCGCCAAGAACCGC
AACATACGGCGATGGTACCAACTAGGCGAAACGCTTGGGCGAGGCATAGA
CGGAATCGTCGTGCTTGGCACCTCTGTCCAGAATCGTCACCTTGTCGCCG
TCAAGAGGATCGGATGGTTCAGCCTATCCACAACCGTCGGTCAAAAGCTG
CGATACATCCTTCGTGAGATTCAACTGCAACACAAAGCGGCGAAGCGATC
CTCAAACGTTGCCGCTGTTCTCGACGTATTTTACGACGACGAGTTCTGCT
ACATGGTCATGCAATACGGCAACAAGGGTTCGCTTTGCGACTTACTCTCA
GTTCGCGACGGGCTCTTGGGCGAACAGTTCGTGCGCAATGTCGTCATACA
GTTGGGCAAATGCTTGCTGTCCATGCACCAAGTCAATCTCGTGCATCGCG
ATATCAAATGTGATAACGTGCTTATTGCACACACCCGACGCGTCCCTCTG
CGCGTTCTGCTGTGCGACTTCGGCTTTGCCACAGTGTGGCGCCCTGAACT
CAAGCACTCTATCCTGTCGTTTTGTCGAGAGCCACTGGGAACAGAGGCGT
ACTTTGCCCCAGAATTGTTGAGAGGGCAACCGTACGGAGCGCCGGTGGAC
GTCTTTGCTCTCGGGGTGCTCTGCCATGTTTGTCTCACGGGCGCTTTCCC
TTTCGAGTCGCCCTCGCAACAGCGAACGCTGCGCATGATCGAAAACGGTG
CCTTGCCTCTTCTGCATGGCGCGCAAGTTTCAGAGGAAGCGAAGTCGTTT
ACGCGCGCTTTGCTCAACCAGGACTCTTACAAACGCCCGCCGGCGGTGGC
ACTGCTTCAGCACCGCTGGATTCGCGGCGGCCACGAAAGCTTCAGGCGGC
TGCGGCGCGCGCCGCCCGCCGCAGTGTGGAGGAGACTGTTTCACGTTGTG
ACAGCAGCCCACGCGATGCAGCGGCTGGCGAAGCGCGCGCGCCTTGTGCA
GTCGCAAGGCGGGCGCATCTCCTTCCGACCGTCGAGTGCGCGCGCCAGAA
TGGCAACGAATCGCCGCATCACCTTGCGCATGCCCGCGTCCGCGGGCTCA
GAGACAAGGCGCATTCGCTCCGACATGCACGACCGTAGACTGCCCGCAAG
TAAGCGAAGAAGACAGCAGACAGCCGATTGA