Gvermi303.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi303.t1
Unique NameGvermi303.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length84
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_14386contigScGOVlb_14386:1..250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G6H4
PFAMsNa_H_Exchanger
Max annot lvl2759|Eukaryota
Evalue1.43e-09
EggNOG OGsCOG0025@1|root,KOG1965@2759|Eukaryota
Descriptionpotassium:proton antiporter activity
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi303Gvermi303Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_14386 1..250 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi303.t1.CDS1Gvermi303.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_14386 1..250 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi303.t1.exon1Gvermi303.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_14386 1..250 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi303.t1.start1Gvermi303.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_14386 248..250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi303.t1Gvermi303.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_14386 1..250 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi303.t1 ID=Gvermi303.t1|Name=Gvermi303.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=84bp
MCFRNKWLGWKEAFVVGFSGLRGAVSLILALEVAGSQNLPEGVKSRVVLW
TTGIVALSLLVNGFLVKPLIHGLKLDRAEKSREX
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spliced messenger RNA

>Gvermi303.t1 ID=Gvermi303.t1|Name=Gvermi303.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=250bp|location=Sequence derived from alignment at ScGOVlb_14386:1..250- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTTTCCGCAACAAGTGGCTGGGGTGGAAAGAGGCCTTTGTCGTTGG
TTTCAGCGGTCTTCGTGGCGCCGTTTCGCTCATTCTTGCTCTGGAAGTTG
CTGGCAGTCAGAATCTTCCGGAAGGAGTCAAATCTCGTGTTGTTCTGTGG
ACTACTGGTATTGTGGCTCTCAGTTTGCTTGTGAATGGTTTTCTTGTCAA
ACCGCTCATTCACGGCCTCAAACTTGACCGCGCTGAAAAGTCGAGGGAAG
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protein sequence of Gvermi303.t1

>Gvermi303.t1 ID=Gvermi303.t1|Name=Gvermi303.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=84bp
MCFRNKWLGWKEAFVVGFSGLRGAVSLILALEVAGSQNLPEGVKSRVVLW
TTGIVALSLLVNGFLVKPLIHGLKLDRAEKSREX
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mRNA from alignment at ScGOVlb_14386:1..250-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi303.t1 ID=Gvermi303.t1|Name=Gvermi303.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=250bp|location=Sequence derived from alignment at ScGOVlb_14386:1..250- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTTTCCGCAACAAGTGGCTGGGGTGGAAAGAGGCCTTTGTCGTTGG
TTTCAGCGGTCTTCGTGGCGCCGTTTCGCTCATTCTTGCTCTGGAAGTTG
CTGGCAGTCAGAATCTTCCGGAAGGAGTCAAATCTCGTGTTGTTCTGTGG
ACTACTGGTATTGTGGCTCTCAGTTTGCTTGTGAATGGTTTTCTTGTCAA
ACCGCTCATTCACGGCCTCAAACTTGACCGCGCTGAAAAGTCGAGGGAAG
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Coding sequence (CDS) from alignment at ScGOVlb_14386:1..250-

>Gvermi303.t1 ID=Gvermi303.t1|Name=Gvermi303.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=250bp|location=Sequence derived from alignment at ScGOVlb_14386:1..250- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTTTCCGCAACAAGTGGCTGGGGTGGAAAGAGGCCTTTGTCGTTGG
TTTCAGCGGTCTTCGTGGCGCCGTTTCGCTCATTCTTGCTCTGGAAGTTG
CTGGCAGTCAGAATCTTCCGGAAGGAGTCAAATCTCGTGTTGTTCTGTGG
ACTACTGGTATTGTGGCTCTCAGTTTGCTTGTGAATGGTTTTCTTGTCAA
ACCGCTCATTCACGGCCTCAAACTTGACCGCGCTGAAAAGTCGAGGGAAG
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